View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9881_high_12 (Length: 273)

Name: NF9881_high_12
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9881_high_12
NF9881_high_12
[»] chr4 (2 HSPs)
chr4 (151-250)||(48967823-48967922)
chr4 (207-250)||(42994496-42994539)
[»] scaffold0007 (1 HSPs)
scaffold0007 (187-250)||(81684-81747)
[»] chr7 (1 HSPs)
chr7 (151-233)||(11503765-11503848)
[»] chr2 (1 HSPs)
chr2 (206-248)||(923225-923267)
[»] chr8 (1 HSPs)
chr8 (199-250)||(38016395-38016447)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 48967922 - 48967823
Alignment:
Q  151 tttgtttctatctcattcaaattgacggtaaattatttaaatttgtatttttgtggttttattgggtaaacaatggtgttgttgagaatgaaaagtggta 250  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  48967922 tttgtttctatctcatttaaatttacgttaaattacttaaatttgtatttttgtggttttattgggtaaataatggtgctgttgagaatgaaaattggta 48967823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 42994496 - 42994539
Alignment:
Q  207 ttttattgggtaaacaatggtgttgttgagaatgaaaagtggta 250  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||    
T  42994496 ttttcttgggtaaataatggtgttgttgagaatgaaaattggta 42994539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 81747 - 81684
Alignment:
Q  187 ttaaatttgtatttttgtggttttattgggtaaacaatggtgttgttgagaatgaaaagtggta 250  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  81747 ttaaatttgtatttttgtggttttattgggtaaataatggtattgttgagaatgaaaattggta 81684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 11503765 - 11503848
Alignment:
Q  151 tttgtttctatctcattcaaattgacggtaaattatttaaatttgta-tttttgtggttttattgggtaaacaatggtgttgtt 233  Q
    ||||||||||||||||| ||| ||| ||||| ||| ||||||||||| ||||||||  |||||||| |||||||||||| ||||    
T  11503765 tttgtttctatctcatttaaactgatggtaagttaattaaatttgtattttttgtgtctttattggataaacaatggtgatgtt 11503848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 923225 - 923267
Alignment:
Q  206 gttttattgggtaaacaatggtgttgttgagaatgaaaagtgg 248  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  923225 gttttattaggtaaacaatggtgttgttgtgaatgaaaagtgg 923267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 38016447 - 38016395
Alignment:
Q  199 ttttgtggttt-tattgggtaaacaatggtgttgttgagaatgaaaagtggta 250  Q
    ||||||||||| ||||||| ||||||||||| | |||||||| ||||||||||    
T  38016447 ttttgtggtttgtattgggcaaacaatggtgattttgagaataaaaagtggta 38016395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University