View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_high_13 (Length: 272)
Name: NF9881_high_13
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 40076617 - 40076878
Alignment:
| Q |
1 |
caatgtcaccaccgacaacctttttgtttgtcaacaaacagcttacacctggcatttccttc------------gcacattacacatgttatacagtact |
88 |
Q |
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| T |
40076617 |
caatgtcaccaccgacaacctttttgtttgtcaacaaacagcttacacctggcatttccttctcctcatagaatgcacattacacatgttatacagtact |
40076716 |
T |
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| Q |
89 |
tgtagcaccttacccttgttcttcttacaa-ccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataatccaaa |
187 |
Q |
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| T |
40076717 |
tgtagcaccttactcttgttcttcttacaaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataat----- |
40076811 |
T |
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| Q |
188 |
ccaaaccaaagttcattcattctttccttcactagtgagtttctttgtatctttttggttcattcat |
254 |
Q |
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| T |
40076812 |
ccaaaccaaagttcattcattctttccttcactagtgagtttctttttctctctttggttcattcat |
40076878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 40058713 - 40058864
Alignment:
| Q |
98 |
ttacccttgttcttcttacaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataatccaaaccaaaccaaa |
197 |
Q |
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| T |
40058713 |
ttactcttgttcttcttcaaagcatcatcacttacatttcacacccacgtgaccaaaaaatacaaacacatgcgtaacaaat-----aaaccaaaccaaa |
40058807 |
T |
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| Q |
198 |
gttcattcattctttccttcactagtgagtttctttgtatctttttggttcattcat |
254 |
Q |
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| T |
40058808 |
gttcattcattccttctttccctagtgagtttctttctctatttttggttcattcat |
40058864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 40084664 - 40084802
Alignment:
| Q |
105 |
tgttcttcttacaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataatccaaaccaaaccaaagttcatt |
204 |
Q |
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| T |
40084664 |
tgttcttcttctaagcatcatcacttacatttcacatccacgtgaccaaaa-----aaacaca--tgtaacaaataaaccaaaccaaaccaaag----tc |
40084752 |
T |
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| Q |
205 |
cattctttccttcactagtgagtttctttgtatctttttggttcattcat |
254 |
Q |
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| T |
40084753 |
caatctttccttccctagtgagtttctttttctctttttggatcattcat |
40084802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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