View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9881_high_6 (Length: 500)
Name: NF9881_high_6
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 142 - 488
Target Start/End: Original strand, 4195504 - 4195847
Alignment:
| Q |
142 |
ccttacaatagagcttccctctaatcttcttatagctaagaaatttattcaaacaacactaactttggtttacatggattccatcgacaagagcaacatt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195504 |
ccttacaatagagcttccctctaatcttcttatagctaagaaatttattcaaacaacactacctttggtttacatggattccatcgacaagagcaacatt |
4195603 |
T |
|
| Q |
242 |
aaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggcttaggttccatc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195604 |
aaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaaca---acaacccctcttacttactttgacatattttggcttaggttccatc |
4195700 |
T |
|
| Q |
342 |
cggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctcttt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195701 |
cggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctcttt |
4195800 |
T |
|
| Q |
442 |
aaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4195801 |
aaccctccaacactttcttcctttagctggtaaaatcgtttggcctt |
4195847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 213 - 489
Target Start/End: Original strand, 4233324 - 4233597
Alignment:
| Q |
213 |
acatggattccatcgacaagagcaacattaaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttactta |
312 |
Q |
| |
|
|||||| ||||| | |||| | |||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4233324 |
acatggcttccaacaacaacaacaacgttaaaatccatgaacacaccaaagtttttcctccatcatcaactcaaaaaaca---acaacccctcttactta |
4233420 |
T |
|
| Q |
313 |
ctttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaactt |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| | || ||| |
|
|
| T |
4233421 |
ctttgacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttcttcaagaagctt |
4233520 |
T |
|
| Q |
413 |
gttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggccttt |
489 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4233521 |
gttccaattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttggccttt |
4233597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 213 - 488
Target Start/End: Original strand, 4250352 - 4250624
Alignment:
| Q |
213 |
acatggattccatcgacaagagcaacattaaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttactta |
312 |
Q |
| |
|
|||||| ||||| | |||| |||||||||||| | || || ||| | || ||| ||||||||||||||| |||||| || ||| ||||||||||| |
|
|
| T |
4250352 |
acatggcttccaacaacaacagcaacattaaagttcacgatcacttcaaggttgttcctccatcatcaac---aaaaaccacctcaatccctcttacttt |
4250448 |
T |
|
| Q |
313 |
ctttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaactt |
412 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| || |||| || |
|
|
| T |
4250449 |
cttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcacacccttctttcttctttcaaacgatt |
4250548 |
T |
|
| Q |
413 |
gttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
488 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
4250549 |
gttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttggcctt |
4250624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 228 - 486
Target Start/End: Original strand, 4188701 - 4188956
Alignment:
| Q |
228 |
acaagagcaacattaaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttg |
327 |
Q |
| |
|
|||||| ||| || ||||||||||||||| | |||||| |||| ||||||||||||||| | ||||||| ||| | |||| ||| ||||||||||| |
|
|
| T |
4188701 |
acaagaacaatatcaaaatccatgaacacttcaaagttgttccttcatcatcaacccaaa---ctacaacaattcctttcactttcttcgacatattttg |
4188797 |
T |
|
| Q |
328 |
gcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaa |
427 |
Q |
| |
|
| | | ||||||||| ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||| || |||||||| ||||||||||||| | |
|
|
| T |
4188798 |
gataaagttccatcctatagaacgaatcttcttttacaccctcccaaattcacaatcacacccttctttcttctttcaaaaactagttccaattctcaga |
4188897 |
T |
|
| Q |
428 |
tcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcc |
486 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
4188898 |
tcatcactctctttaaccctccaacactttctccctttagctggtaaaattgtttggcc |
4188956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 288 - 474
Target Start/End: Original strand, 4191898 - 4192084
Alignment:
| Q |
288 |
aaacaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcaca |
387 |
Q |
| |
|
|||| |||||| |||||| |||| ||| |||||||| ||||| | | | |||| || |||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
4191898 |
aaacgacaacattccctctcactttcttcgacatattatggctaaaggtatatccagtggaacgtgttttcttctacaccctcccaagttcacaatcaca |
4191997 |
T |
|
| Q |
388 |
cacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaa |
474 |
Q |
| |
|
| |||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4191998 |
cccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttctccctttagctggtaa |
4192084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 484
Target Start/End: Original strand, 4241132 - 4241380
Alignment:
| Q |
233 |
agcaacattaaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacaacccctcttacttactttgacatattttggctta |
332 |
Q |
| |
|
|||||||||||||| || |||||||| |||||| |||||||||||||| ||||| |||| ||| | |||| |||| || |||||||||||||| | |
|
|
| T |
4241132 |
agcaacattaaaattcacgaacacatcaaagttgttcctccatcatcaaaccaaa---caacctcaatctctctcacttttttcgacatattttggctaa |
4241228 |
T |
|
| Q |
333 |
ggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttc |
432 |
Q |
| |
|
|||||||||| ||||| | || ||||||||||||||||||||||| ||| ||||||| ||||| || |||| | ||||||||| ||| |||||||| |
|
|
| T |
4241229 |
ggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttc |
4241328 |
T |
|
| Q |
433 |
attctctttaaccctccaacactttcttcctttagctggtaaactcgtttgg |
484 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4241329 |
actttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
4241380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 4094835 - 4094999
Alignment:
| Q |
324 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
423 |
Q |
| |
|
||||||| || || ||||||||||||||| ||||||||||||||||||||| |||||| |||||| || |||| || ||| |||| |||||||||| || |
|
|
| T |
4094835 |
tttggctaagatttcatccggtagaacgtattttcttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaact |
4094934 |
T |
|
| Q |
424 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
488 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
4094935 |
caaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttggcctt |
4094999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 488
Target Start/End: Original strand, 4121860 - 4122024
Alignment:
| Q |
324 |
tttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattct |
423 |
Q |
| |
|
||||||| ||||| ||||| || |||||| | |||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||||| || |
|
|
| T |
4121860 |
tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact |
4121959 |
T |
|
| Q |
424 |
caaatcttcattctctttaaccctccaacactttcttcctttagctggtaaactcgtttggcctt |
488 |
Q |
| |
|
|||||||||| ||||||||||||||||| | || | |||||||||||||| |||||||||||| |
|
|
| T |
4121960 |
caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttggcctt |
4122024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 358 - 489
Target Start/End: Original strand, 4102417 - 4102548
Alignment:
| Q |
358 |
cttctacaccctcccaaattcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacacttt |
457 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| |||||| |||| |||||||||| ||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
4102417 |
cttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttc |
4102516 |
T |
|
| Q |
458 |
cttcctttagctggtaaactcgtttggccttt |
489 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |
|
|
| T |
4102517 |
ctccctttagctggtaacatcgtttggccttt |
4102548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 4195380 - 4195438
Alignment:
| Q |
19 |
ttaattgctacataatctatagtttttaattcccgacataaattatcttaatattcaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195380 |
ttaattgctacataatctatagtttttaattcccgacataaattatcttaatattcaag |
4195438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University