View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_high_7 (Length: 462)
Name: NF9881_high_7
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 11759565 - 11759133
Alignment:
| Q |
20 |
tgttaatactataataatttctataatcttatagatattttatttaaagctggtacaatttttaaaaagaaatttaccctacatttacaacttgcaagta |
119 |
Q |
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| T |
11759565 |
tgttaatattataataatttctataatcttatagatattttatttaaagctggtacaatttttaaaaagaaatttacactacatttacaacttgcaagta |
11759466 |
T |
|
| Q |
120 |
aaaggtaaaatctctcgttggacaacctgaagtaactaaccgcatgcacgagtaaaaagaaaagtgcacatattccatgtactataatgtgaatttaacc |
219 |
Q |
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| T |
11759465 |
aaaggtaaaatctctcgttggaaaacctgaagtaactaaccgcatgcacgagtaaaaagaaaagtgcacatattccatgtactaaaatgtgaatttaacc |
11759366 |
T |
|
| Q |
220 |
cacacacttcattttatttcacattttataaatatttgattgatcacatttctcactctcgttcatgttcttattttctaaccttcaaaagcgtgtctca |
319 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11759365 |
cacacacttcattttatttcacatttgataaatatttgattgatcacatttctcactctcgttcttgttcttattttctaaccttcaaaagcgtgtctca |
11759266 |
T |
|
| Q |
320 |
caagacaagtggaagctcctaagtactaactgattctccaaca------atctcatcacactcttcaagcgtgctctctcacatgcaacactacttaata |
413 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759265 |
caagacaagtggaagctactaagtactaactgattctccaacaatctttatctcatcacactcttcaagcgtgctctctcacatgcaacactacttaata |
11759166 |
T |
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| Q |
414 |
acgaactactagcttttaattaagtaataacaa |
446 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11759165 |
acgaactactagcttttaattaagtaataacaa |
11759133 |
T |
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