View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_1 (Length: 759)
Name: NF9881_low_1
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 202 - 742
Target Start/End: Original strand, 44958306 - 44958849
Alignment:
| Q |
202 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgtaacatggttgtggtaccttgggtatagacac |
301 |
Q |
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| T |
44958306 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgtaacatggttgtggtaccttgggtatagacac |
44958405 |
T |
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| Q |
302 |
ctaactttaaggttcttagcattttgaagtcaaggtc---aatggtgcatggttttcccgaattaagttgcttgacgagcaaggacctcatttgtttctc |
398 |
Q |
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| T |
44958406 |
ctaactttaaggttcttagcattttgaagtcaaggtcgtcaatggtgcatggttttcccgaattaagttgcttgacgagcaaggaactcatttgtttctc |
44958505 |
T |
|
| Q |
399 |
gtattccagtgagggcaaagcttgatgtggtttaataagatgttagtggaccatttgatacattttcattgtgagggaataggtacattgtctcatttat |
498 |
Q |
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| T |
44958506 |
atattccaatgagggcaaagcttgatgtggtttaataagatgttagtggaccatttgatacattttcattgtgagggaataggtacattgtctcatttat |
44958605 |
T |
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| Q |
499 |
gggtgaatacagtacaattacgtaggtttacctaatcaagactaaagatgaagtgtttcatgtcttcaataagttcaaagtattagttgaaaaagaagca |
598 |
Q |
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| T |
44958606 |
gggtgaatacagtacaattacgtaggtttacctaatcaagactagagatgaagtgtttcatgtcttcaataagttcaaagtattagttgaaaaagaagca |
44958705 |
T |
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| Q |
599 |
gacaggtaaatatgcttagaagtgatgaaggatgagaatatacatctaaatagttggagaatttctttgatgagatgggaattcaacatgagatcacttc |
698 |
Q |
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| T |
44958706 |
gacaggtaaatatgcttagaagtgatgaaggatgagaatatacatctaaatagttagagaatttttttgatgagatgggaattcaacatgagatcacttc |
44958805 |
T |
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| Q |
699 |
accattcacatctatacataatgtttgatgaagaggaggaaaag |
742 |
Q |
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| T |
44958806 |
accattcacatctatacataatgtttgatgaagaggaggaaaag |
44958849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 44957918 - 44958112
Alignment:
| Q |
11 |
caaaggcaagcatggacacaaggaaatcattacatgggtgatctatgttcctaggatcaagagtaatttaataagcatgggctaattactagaaaaaggt |
110 |
Q |
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| T |
44957918 |
caaaggcaagcatggacacaaggaaatcattacatgggtgatctatgttcctaggatcaagagtaatttaataagcatgggctaattactacaaaaaggt |
44958017 |
T |
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| Q |
111 |
tttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataagagaattctaattaagagctcctatatctcataatagaatat |
209 |
Q |
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| T |
44958018 |
tttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataagagaattc----taagagctcctatatctcataatagaatat |
44958112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 32561485 - 32561428
Alignment:
| Q |
94 |
aattactagaaaaaggttttactatgcacattgaacacaaccaaatataagtttttga |
151 |
Q |
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| T |
32561485 |
aattactagaaaatggttttactatgcatcttgaacacaatcaaattaaagtttttga |
32561428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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