View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_12 (Length: 407)
Name: NF9881_low_12
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 29117163 - 29117003
Alignment:
| Q |
59 |
ttcaattataactcctattggttaataaatttgccacttgatctttactccaatttaaattttcattttcttacttgctatctcaagtaatgacacctca |
158 |
Q |
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| T |
29117163 |
ttcaattataactcctattggttaataaatttgccacttgatctttactccaatttaaattttcattttcttacttgctctctcaagtaatgacacctca |
29117064 |
T |
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| Q |
159 |
tcttttatgcttgcttctctcatgtgacatcagaatttacctagattgatagcataaatgt |
219 |
Q |
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| T |
29117063 |
tcttttatgcttgcttttcttatgtgacatcagaatttagctagattgatagcataaatgt |
29117003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 29117001 - 29116925
Alignment:
| Q |
313 |
ttgttatatattatgcttcataggattagagagctaccactggttccttccttaagtgccaagatattggagctcct |
389 |
Q |
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| T |
29117001 |
ttgttatatattctggttgataggattagagagctaccactggttccttccttaagtgccaagatattggagctcct |
29116925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 29117228 - 29117185
Alignment:
| Q |
12 |
acatcaccttaattcatgttagtcaatgatacaattcccattaa |
55 |
Q |
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| T |
29117228 |
acatcaccttaattcatgttagtcaatgatacaattcccattaa |
29117185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 6189485 - 6189525
Alignment:
| Q |
16 |
caccttaattcatgttagtcaatgatacaattcccattaaa |
56 |
Q |
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| T |
6189485 |
caccttaattcatgttagtcaatgattcgattcccattaaa |
6189525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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