View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9881_low_15 (Length: 321)

Name: NF9881_low_15
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9881_low_15
NF9881_low_15
[»] chr8 (12 HSPs)
chr8 (20-314)||(25632478-25632772)
chr8 (20-271)||(25736135-25736389)
chr8 (25-203)||(24893649-24893830)
chr8 (69-215)||(25496179-25496324)
chr8 (69-206)||(25359971-25360112)
chr8 (69-206)||(25400004-25400145)
chr8 (218-270)||(25496141-25496193)
chr8 (20-101)||(8527380-8527460)
chr8 (226-270)||(25359923-25359967)
chr8 (20-60)||(25360143-25360183)
chr8 (226-270)||(25399956-25400000)
chr8 (20-60)||(25400176-25400216)
[»] scaffold0070 (1 HSPs)
scaffold0070 (20-271)||(29732-29985)
[»] scaffold1505 (2 HSPs)
scaffold1505 (22-206)||(173-360)
scaffold1505 (211-271)||(691-751)
[»] chr1 (1 HSPs)
chr1 (20-101)||(43052160-43052240)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 25632772 - 25632478
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggtatctaattggaattggatttataatttttgtgcatcttgcaatctcatctattcaaaata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25632772 gcacctttgcaatctgcttcacattaataacatatttggtatctaattggaattggatttataatttttgtgcatcttgcaatctcatctattcaaaata 25632673  T
Q  120 gataaccatagttagctattcttattgctccaaattataaaaaagcaatatggttaaacaattgacctaccacaaaatatgaaattactgtatacatcaa 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25632672 gataaccatagttagctattcctattgctccaaattataaaaaagcaatatggttaaacaattgacctaccacaaaatatgaaattactgtatacatcaa 25632573  T
Q  220 attattgtatacaaatgaaacaataacatgtgattatcaaacactaactaaagagcaatgatattatgacaaccaaaaatcaacaacctttgctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25632572 attattgtatacaaatgaaacaataacatgtgattatcaaacactaactaaagagcaatgatattatgacaaccagaaatcaacaacctttgctt 25632478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 25736389 - 25736135
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggtatctaat-----tggaattggatttataatttttgtgcatcttgcaatctcatctattca 114  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||     | |||||||||||||||||| |||||||||||||||||||||||||||    
T  25736389 gcacctttgctatctgcttcacattcataacatatttgatatctaatgtgattagaattggatttataatttctgtgcatcttgcaatctcatctattca 25736290  T
Q  115 aaatagataaccatagttagctattcttattgctccaaattataaaaaagcaatatggttaaacaattgaccta----ccacaaaatatgaaattactgt 210  Q
        | |||||||||||||||||||| |||| |||||||||||||||||||   ||||||| ||||||||||||     ||||||||||||||||| |||    
T  25736289 ----atataaccatagttagctattcatattcctccaaattataaaaaagc---atggttacacaattgacctatcattcacaaaatatgaaattattgt 25736197  T
Q  211 -atacatcaaattattgtatacaaatgaaacaataacatgtgattatcaaacactaactaaa 271  Q
     ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  25736196 aatacatcaaattattatatacaaatgaaacaatagcatgtgattatcaaacactaactaaa 25736135  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 24893649 - 24893830
Alignment:
Q  25 tttgcaatctgcttcacattaataacatatttggtatctaat-----tggaattggatttataatttttgtgcatcttgcaatctcatctattcaaaata 119  Q
    |||||||||||||||||||| |||||||||||||||||||||     | |||||||||||| | ||||||||| ||| |||||||||||||||||| | |    
T  24893649 tttgcaatctgcttcacattcataacatatttggtatctaatgtgattagaattggatttacattttttgtgcttctggcaatctcatctattcaataaa 24893748  T
Q  120 gataaccatagttagctattcttattgctccaaattataaaaaagcaatatggttaaacaattgacctaccacaaaatatgaaa 203  Q
    ||  ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  24893749 ga--accatagttagctattcctattcctccaaattataaaaaagcagtatggttaaacaattgacctaccacaacatatgaaa 24893830  T

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Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 215
Target Start/End: Complemental strand, 25496324 - 25496179
Alignment:
Q  69 gaattggatttataatttttgtgcatcttgcaatctcatctattcaaaatagataaccatagttagctattcttattgctccaaattata-aaaaagcaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||| |||| |  |||||||     
T  25496324 gaattggatttataatttttgtgcatcttgcaatctcatctattc--aatagataagcatagttagctattcctattcctccagattaaagcaaaagcag 25496227  T
Q  168 tatggttaaacaattgacctaccacaaaatatgaaattactgtataca 215  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  25496226 tatggttaaacaattgacctatcacaaaatatgaaattattgtataca 25496179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 25360112 - 25359971
Alignment:
Q  69 gaattggatttataatttttgtgcatcttgcaatctcatctattcaaaatagataaccatagttagctattcttattgctccaaattataaaaaagcaa- 167  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||| |||||||||||||||     
T  25360112 gaattggatttataatttttgtgcaccttgcaatctcatctattc--aatagataagcatagttagctattcctattcctccagattataaaaaagcaaa 25360015  T
Q  168 -----tatggttaaacaattgacctaccacaaaatatgaaatta 206  Q
         ||||||||||||||||||||| |||||||||||||||||    
T  25360014 agcagtatggttaaacaattgacctatcacaaaatatgaaatta 25359971  T

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Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 25400145 - 25400004
Alignment:
Q  69 gaattggatttataatttttgtgcatcttgcaatctcatctattcaaaatagataaccatagttagctattcttattgctccaaattataaaaaagcaa- 167  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||| |||||||||||||||     
T  25400145 gaattggatttataatttttgtgcaccttgcaatctcatctattc--aatagataagcatagttagctattcctattcctccagattataaaaaagcaaa 25400048  T
Q  168 -----tatggttaaacaattgacctaccacaaaatatgaaatta 206  Q
         ||||||||||||||||||||| |||||||||||||||||    
T  25400047 agcagtatggttaaacaattgacctatcacaaaatatgaaatta 25400004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 25496193 - 25496141
Alignment:
Q  218 aaattattgtatacaaatgaaacaataacatgtgattatcaaacactaactaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25496193 aaattattgtatacaaatgaaacaataacatgtgattatcaaacattaactaa 25496141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 8527460 - 8527380
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggtatctaattgga-attggatttataatttttgtgcatcttgcaa 101  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||  |  ||  ||||||||||||||||||||||||||||||    
T  8527460 gcacctttgcaatctgcttcacattgataacatatttagcatct--tcagagtttggatttataatttttgtgcatcttgcaa 8527380  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 25359967 - 25359923
Alignment:
Q  226 gtatacaaatgaaacaataacatgtgattatcaaacactaactaa 270  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||    
T  25359967 gtatacaaatcaaacaatacaatgtgattatcaaacactaactaa 25359923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 25360183 - 25360143
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggta 60  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  25360183 gcacctttgcaatctgcttcacatccataacatatttggta 25360143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 25400000 - 25399956
Alignment:
Q  226 gtatacaaatgaaacaataacatgtgattatcaaacactaactaa 270  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||    
T  25400000 gtatacaaatcaaacaatacaatgtgattatcaaacactaactaa 25399956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 25400216 - 25400176
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggta 60  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  25400216 gcacctttgcaatctgcttcacatccataacatatttggta 25400176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 29732 - 29985
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggtatctaat-----tggaattggatttataatttttgtgcatcttgcaatctcatctattca 114  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||     | ||||||||||||||||||||||||||||||||||||||||||||||    
T  29732 gcacctttgcaatctgcttcacattcataacatattcggtatctaatgtgattagaattggatttataatttttgtgcatcttgcaatctcatctattca 29831  T
Q  115 aaatagataaccatagttagctattcttattgctccaaattataaaaaagcaatatggttaaacaattgacctaccacaaaatatgaaattactgt-ata 213  Q
    | |||    |||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||    
T  29832 atata----accatagttacctattcctattcctccaaattataaaaaagcagtatggttaaacaattgacctatcacaaaatatgaaattattgtaata 29927  T
Q  214 catcaaattattgtatacaaatgaaacaataacatgtgattatcaaacactaactaaa 271  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  29928 catcaaattattatatacaaatgaaacaatagcatttgattatcaaacactaactaaa 29985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 173 - 360
Alignment:
Q  22 acctttgcaatctgcttcacattaataacatatttggtatctaat-----tggaattggatttataatttttgtgcatcttgcaatctcatctattcaaa 116  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||     | |||||||||||||||||||||||||||||||||||||||||||||||     
T  173 acctttgcaatctgcttcacattcataacatatttgatatctaatgtgattagaattggatttataatttttgtgcatcttgcaatctcatctattcaa- 271  T
Q  117 atagataaccatagttagctattcttattgctccaaattataaaaaagcaatatggttaaacaattgacctaccacaaaatatgaaatta 206  Q
     ||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||    
T  272 -tagataaccatagttagctattcctattcctccaaattataaagaagcagtatggttaaataattgacctatcacaaaatatgaaatta 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 691 - 751
Alignment:
Q  211 atacatcaaattattgtatacaaatgaaacaataacatgtgattatcaaacactaactaaa 271  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  691 atacatcaaattattatatataaatgaaacaatagcatgtgattatcaaacactaactaaa 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 43052160 - 43052240
Alignment:
Q  20 gcacctttgcaatctgcttcacattaataacatatttggtatctaattgga-attggatttataatttttgtgcatcttgcaa 101  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||  |  ||  ||||||||||||||||||||||||||||||    
T  43052160 gcacctttgcaatctgcttcacattgataacatatttggcatct--tcagagtttggatttataatttttgtgcatcttgcaa 43052240  T

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