View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_16 (Length: 277)
Name: NF9881_low_16
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2759512 - 2759246
Alignment:
| Q |
1 |
tcacaaaaatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattctatacagctt |
100 |
Q |
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| T |
2759512 |
tcacaataatggcagtgtctttatccaaaaaacggtccaaattttcaagaaaattagaacccaaacaatcttgttttgccttcacaattctatacagctt |
2759413 |
T |
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| Q |
101 |
catacgtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2759412 |
catacgtagaatttctgctttaatctttcttttaatccttatatacatttggtcttctttctccacaattataacaggaaacatcattcatgtttgtttt |
2759313 |
T |
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| Q |
201 |
tctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttg |
267 |
Q |
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| T |
2759312 |
tctacaagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttg |
2759246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 106 - 267
Target Start/End: Complemental strand, 2755446 - 2755285
Alignment:
| Q |
106 |
gtagaatttctgctttaatctttcttttaatccttatatacatgtggtcttctttctccacaattataacaggaaacatcattcatgtttgtttttctac |
205 |
Q |
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|||||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||| |
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| T |
2755446 |
gtagaatttcggctttaatctttcttttattcctaatctacatgtggtcttctttatccactattataacagtcaacaccattcatgtttgttgttctac |
2755347 |
T |
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| Q |
206 |
aagaaagctcaatgataacttctattgtgtttctgcagccactcatactaatccttcctttg |
267 |
Q |
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||||||| ||| | ||| ||| |||||| ||||| || |||||||||||||| ||||||||| |
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| T |
2755346 |
aagaaagttcagtaatagcttttattgtctttcttcacccactcatactaatacttcctttg |
2755285 |
T |
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