View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_17 (Length: 277)
Name: NF9881_low_17
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 34398959 - 34399230
Alignment:
| Q |
6 |
agaagcagagaaacaaaagaaaccttagaatttgaagacgatgattctgttaataattctgtaagttcaaggaaaaatgatttggaagaatttccaatct |
105 |
Q |
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| T |
34398959 |
agaagaagagaaacaaaagaaaccttagaatttgaagacgatgattctgttaataattctgtaagttcaaggaaaaataatttggaagaatttccaatct |
34399058 |
T |
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| Q |
106 |
cattaaggcaaagatactcaaaacagtgctctcttccaaacaacaaaagaacactatctataaggactttacttccaactccatctgcaaaaaagtattt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34399059 |
cattaaggcaaagatactcaaaacagtgctctcttccaaacaacaaaagaacactatctataaggactttacttccaactccatctgcaaaaaagtattt |
34399158 |
T |
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| Q |
206 |
cactgcaggcctaatgcaaggtgttattaaggtaaagacacaaagagaaggatctaatttgtctcattcttc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34399159 |
cactgcaggcctaatgcaaggtgttattaaggtaaagacacaaagagaaggatctaatttgtctcattcttc |
34399230 |
T |
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