View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9881_low_2 (Length: 743)

Name: NF9881_low_2
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9881_low_2
NF9881_low_2
[»] chr8 (14 HSPs)
chr8 (14-724)||(8863167-8863872)
chr8 (157-355)||(9054744-9054942)
chr8 (241-406)||(7493025-7493195)
chr8 (241-366)||(5990457-5990583)
chr8 (434-555)||(11712240-11712362)
chr8 (241-366)||(3051195-3051321)
chr8 (375-522)||(31513069-31513216)
chr8 (294-406)||(19752246-19752360)
chr8 (434-530)||(7597436-7597532)
chr8 (438-558)||(8153568-8153688)
chr8 (331-424)||(7412507-7412602)
chr8 (241-325)||(6813758-6813845)
chr8 (225-316)||(33503786-33503879)
chr8 (438-526)||(5689109-5689198)
[»] chr2 (16 HSPs)
chr2 (224-526)||(18674135-18674439)
chr2 (157-366)||(2869588-2869798)
chr2 (238-461)||(28770572-28770799)
chr2 (150-346)||(12632532-12632725)
chr2 (179-351)||(15903801-15903972)
chr2 (65-412)||(3277906-3278251)
chr2 (157-349)||(35397503-35397694)
chr2 (56-281)||(16388452-16388673)
chr2 (373-497)||(12632893-12633017)
chr2 (433-555)||(4560903-4561026)
chr2 (157-419)||(14698849-14699112)
chr2 (241-349)||(27149207-27149316)
chr2 (619-721)||(40964530-40964633)
chr2 (157-310)||(20522212-20522367)
chr2 (283-424)||(23078306-23078448)
chr2 (283-460)||(41586351-41586527)
[»] chr4 (17 HSPs)
chr4 (65-412)||(37781766-37782114)
chr4 (168-357)||(34670570-34670756)
chr4 (243-361)||(36175185-36175302)
chr4 (375-531)||(873247-873401)
chr4 (176-350)||(1983213-1983386)
chr4 (241-281)||(39774287-39774327)
chr4 (225-349)||(18912276-18912400)
chr4 (331-424)||(6743250-6743345)
chr4 (157-424)||(10047371-10047643)
chr4 (332-424)||(16623128-16623222)
chr4 (332-424)||(16628707-16628801)
chr4 (225-298)||(4956239-4956313)
chr4 (438-533)||(36463643-36463738)
chr4 (454-557)||(3739373-3739476)
chr4 (434-559)||(21704065-21704192)
chr4 (92-137)||(873638-873683)
chr4 (434-522)||(37755162-37755251)
[»] chr1 (17 HSPs)
chr1 (262-644)||(25116321-25116702)
chr1 (153-534)||(10996948-10997334)
chr1 (153-366)||(35109433-35109645)
chr1 (92-361)||(32736897-32737163)
chr1 (223-313)||(11032268-11032359)
chr1 (157-424)||(16124349-16124621)
chr1 (238-366)||(918375-918505)
chr1 (157-406)||(13598390-13598645)
chr1 (225-316)||(37918719-37918809)
chr1 (294-419)||(32889570-32889695)
chr1 (485-537)||(2263273-2263326)
chr1 (257-351)||(17345430-17345525)
chr1 (438-526)||(45644596-45644685)
chr1 (480-526)||(8871343-8871390)
chr1 (294-349)||(22819559-22819613)
chr1 (438-528)||(28265807-28265898)
chr1 (332-424)||(3281875-3281969)
[»] chr6 (17 HSPs)
chr6 (223-499)||(30517886-30518167)
chr6 (65-424)||(33721393-33721753)
chr6 (225-360)||(1115006-1115141)
chr6 (165-366)||(99156-99356)
chr6 (294-366)||(14521803-14521874)
chr6 (331-424)||(5572078-5572173)
chr6 (241-424)||(31086309-31086495)
chr6 (294-406)||(31979644-31979757)
chr6 (331-406)||(18233013-18233091)
chr6 (240-319)||(20504932-20505012)
chr6 (283-419)||(31936696-31936832)
chr6 (377-424)||(21356253-21356299)
chr6 (619-689)||(30517709-30517780)
chr6 (480-526)||(3039198-3039244)
chr6 (330-403)||(4630119-4630195)
chr6 (157-279)||(10077149-10077270)
chr6 (240-277)||(21247087-21247124)
[»] chr3 (15 HSPs)
chr3 (150-554)||(29100144-29100556)
chr3 (223-530)||(5366035-5366353)
chr3 (71-557)||(21156339-21156817)
chr3 (241-325)||(4386853-4386939)
chr3 (157-424)||(21711215-21711484)
chr3 (241-419)||(35925555-35925735)
chr3 (176-424)||(8370313-8370562)
chr3 (253-325)||(25517069-25517143)
chr3 (255-426)||(8126719-8126894)
chr3 (332-424)||(36029261-36029355)
chr3 (438-526)||(29196642-29196730)
chr3 (480-530)||(2075352-2075403)
chr3 (157-279)||(1736279-1736400)
chr3 (332-424)||(16264517-16264611)
chr3 (92-137)||(44658592-44658637)
[»] scaffold0002 (1 HSPs)
scaffold0002 (238-450)||(14754-14971)
[»] scaffold0016 (1 HSPs)
scaffold0016 (150-476)||(102277-102606)
[»] chr7 (13 HSPs)
chr7 (100-314)||(28617172-28617384)
chr7 (241-366)||(5817166-5817292)
chr7 (438-526)||(12098113-12098202)
chr7 (294-424)||(9185009-9185141)
chr7 (294-424)||(9189842-9189974)
chr7 (436-535)||(27073644-27073744)
chr7 (436-535)||(27204569-27204669)
chr7 (454-533)||(36146679-36146759)
chr7 (297-406)||(2580523-2580635)
chr7 (480-554)||(18396112-18396187)
chr7 (228-302)||(8140647-8140721)
chr7 (438-522)||(24526138-24526222)
chr7 (255-366)||(3047344-3047455)
[»] chr5 (11 HSPs)
chr5 (161-441)||(2630227-2630511)
chr5 (71-557)||(5611052-5611530)
chr5 (241-348)||(33030854-33030962)
chr5 (241-351)||(6741927-6742038)
chr5 (157-424)||(28832251-28832519)
chr5 (238-403)||(30899939-30900108)
chr5 (332-424)||(11916807-11916901)
chr5 (283-351)||(3651619-3651686)
chr5 (240-316)||(34842677-34842755)
chr5 (244-312)||(33831692-33831763)
chr5 (434-534)||(5007381-5007482)
[»] scaffold0076 (1 HSPs)
scaffold0076 (67-276)||(15975-16181)
[»] scaffold0006 (1 HSPs)
scaffold0006 (157-406)||(5675-5930)
[»] scaffold0219 (1 HSPs)
scaffold0219 (434-532)||(27694-27793)


Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 14 - 724
Target Start/End: Complemental strand, 8863872 - 8863167
Alignment:
Q  14 caaaggaagtgctaattaatgaataaaatagtttcaagcagcagcatcagtaacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaata 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8863872 caaaggaagtgctaattaatgaataaagtagtttcaagcagcagca---gtaacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaata 8863776  T
Q  114 tattcaaagcaacaaatataagaatgaat--ggatgggagaaaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggaga 211  Q
    ||||||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |    
T  8863775 tattcaaagcaacaaatataagaataaatatggatgagagaaaacaacacatcaatattgttttcccagttcggttcaaaataacctactctgatggaaa 8863676  T
Q  212 tagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcatagaacaaaccttaatttctacccattttt 311  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  8863675 tagtaactctttgatccactatgagaaagagtgatacaaagaggttacaagaaattaacttaaaagctcacagaacaaaccttaatttctacccattttt 8863576  T
Q  312 caagttacccacacacataaatgaatcctaagagaaaacattaaaggaagattttaatcctaataatgaaatctcactaaccaaggtgtttacaactgtt 411  Q
    ||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8863575 caagtcactcacacacataaatgaatctaaagagaaaacattaaaggaagattttaatcctaataatgaaatctcactaaccaatgtgtttacaactgtt 8863476  T
Q  412 tcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatg 511  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8863475 tcctagcctaagaaataaattttcaccgaagacactcaaacttaaagttctttccattggtttcccaagtttttctctcttgaagctcacccaaaacatg 8863376  T
Q  512 aagaatgaagccttatataatgcacatgacctgagaaaatcgtgccccgaggccgatatccacacgttctgccacgatttgcagttcgtacatagtatga 611  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    |||||||||||||    
T  8863375 aagaatgaagccttatatagtgcacatgatctgagaaaatcgtgccccgaggccgatatccacacgtcgtgccacgatttgca----gtacatagtatga 8863280  T
Q  612 actggttgttatccactaaatcgtgtcacgattcttcccttcacaccacaacttttgttgagacaaaacctccaaaactagaactagatcgtgtcacgat 711  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8863279 actggttgttatccactaaatcgtgtcacgattcttcccttcgcaccacgacttttgttgagacaaaacctccaaaaccagaactagatcgtgtcacgat 8863180  T
Q  712 atcaccaaattgt 724  Q
    |||| ||||||||    
T  8863179 atcatcaaattgt 8863167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 157 - 355
Target Start/End: Complemental strand, 9054942 - 9054744
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||||||| ||| | | |||| |||||| |||||||||||||  ||||| || | | || | |||||||| ||  || |||||||||||| |||    
T  9054942 aacacaccaatattatttactctgttcagtccaatatgacctactctggaggagagagcagctctctaatccactaagatgaa-agtgatacaaagtggt 9054844  T
Q  257 tacaagaaattagcttaaaa--gctcatagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacatta 354  Q
    ||||||||||||||||||||  || || ||||||||   ||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||||||    
T  9054843 tacaagaaattagcttaaaagcgcacaaagaacaaaatctaatttctacccatttttcaagtcactcacactc-tcaatgaatcctaagagaaaacatta 9054745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 7493195 - 7493025
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    ||||||||||||| |||| ||||||||| | ||||||||  || |||||||| | |||||||||||  |||||||||| |||||||| | | ||| ||||    
T  7493195 agtgatacaaagaagttataagaaattaacataaaagctcacacagaacaaaacctaatttctacctgtttttcaagtcacccacactc-tcaataaatc 7493097  T
Q  339 ctaagagaaaacattaaaggaag-attttaatc---ctaataatgaaatctcactaaccaaggtgtttacaa 406  Q
    |||||| |||||| |||||||||  |||| |||   |||||  ||||||||||||| |||||||||||||||    
T  7493096 ctaagaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaa 7493025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 5990583 - 5990457
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaaca-aaccttaatttctacccatttttcaagttacccacacacataaatgaat 337  Q
    ||||||||||||| |||||||||||||||||||||||||  || ||||||  |||| | |||| ||||||||||||||| ||||||||   | |||||||    
T  5990583 agtgatacaaagatgttacaagaaattagcttaaaagctcacaaagaacacgacctcattttc-acccatttttcaagtcacccacac-tttcaatgaat 5990486  T
Q  338 cctaagagaaaacattaaaggaagatttt 366  Q
    |||||||||||||| ||||| ||| ||||    
T  5990485 cctaagagaaaacactaaagaaagctttt 5990457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 434 - 555
Target Start/End: Original strand, 11712240 - 11712362
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatataat 532  Q
    ||||||||||||||||| | |||||||  |||  ||| |  |||| |||| ||||||||||||||| ||| ||||||| ||||||||| ||||||||| |    
T  11712240 tcaccaaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagt 11712339  T
Q  533 gcacatgacctgagaaaatcgtg 555  Q
    ||||||| ||  |||||||||||    
T  11712340 gcacatgtcccaagaaaatcgtg 11712362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 3051195 - 3051321
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    |||||||||||   |||||||||||||||| ||| |||||| |  ||||||| |||||||||||||||||||||| || ||  |||| | | ||||||||    
T  3051195 agtgatacaaatgagttacaagaaattagcataagagctcacaaagaacaaaacttaatttctacccatttttcatgtcacttacactc-tcaatgaatc 3051293  T
Q  339 ctaagagaaaacattaaaggaagatttt 366  Q
    |||||||||| ||  |||||||| ||||    
T  3051294 ctaagagaaagcacaaaaggaagctttt 3051321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 522
Target Start/End: Complemental strand, 31513216 - 31513069
Alignment:
Q  375 taatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggttt 474  Q
    ||||||||||||||||  |||||||||||||| ||||||  |||| |||||||||| | ||| | ||||||||| | | |||  || ||||  |||||||    
T  31513216 taatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactcgaccctaatattttctcatttggttt 31513117  T
Q  475 cctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagc 522  Q
    |  | |||| ||| |||||||| || | ||||||||||||||| ||||    
T  31513116 ctcaagtttctctttcttgaagttctctcaaaacatgaagaataaagc 31513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 19752360 - 19752246
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-attttaatcct---aataatgaaatctcact 389  Q
    ||||||||||||||||||||  | |||||||| | | |||||||||||||||||||||  ||||||||  |||| |||||   ||| |||||||||||||    
T  19752360 taatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaaca-caaaggaagctttttgatccttccaatgatgaaatctcact 19752263  T
Q  390 aaccaaggtgtttacaa 406  Q
    | |||||||||||||||    
T  19752262 acccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 530
Target Start/End: Complemental strand, 7597532 - 7597436
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatata 530  Q
    ||||||||||| || || | ||||||| ||||| ||| ||||  | |||| |||||||||||||   | ||||||||||||||||||||||||||||    
T  7597532 tcaccaaagactcttaaccataaagttatctcccttgatttctcaagtttatctctcttgaagccttcacaaaacatgaagaatgaagccttatata 7597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 558
Target Start/End: Complemental strand, 8153688 - 8153568
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcaca 537  Q
    ||||||| ||||| |||||| ||  |||| ||| |||||||  ||| |||||||| ||||   |  |||||||||||||||||||||| ||||||| |||    
T  8153688 caaagactctcaaccttaaaattacctcctttgatttcctaaatttctctctcttaaagccttcaaaaaacatgaagaatgaagccttttataatgtaca 8153589  T
Q  538 tgacctgagaaaatcgtgccc 558  Q
     || | |||||||||||||||    
T  8153588 agatccgagaaaatcgtgccc 8153568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 7412507 - 7412602
Alignment:
Q  331 aatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |||||| |||||||||| |||| |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  7412507 aatgaaccctaagagaagacataaaaggaagcttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 7412602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 6813758 - 6813845
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaac-aaaccttaatttctacccatttttcaagttacccacac 325  Q
    ||||| |||||| |||||||||||||||||||  |||||  || ||||| |||||| | |||||||||||||||||||| || |||||    
T  6813758 agtgacacaaaggggttacaagaaattagcttgcaagctcacaaagaacaaaacctaattttctacccatttttcaagtcactcacac 6813845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 33503879 - 33503786
Alignment:
Q  225 atccactatgacaaagagtgatac-aaagaggttacaagaaattagcttaaaagc--tcatagaacaaaccttaatttctacccatttttcaagt 316  Q
    ||||||||||| || ||||||||| |||||||||| |||||||||||| | ||||  ||| || ||||  | |||||||||||||||||||||||    
T  33503879 atccactatga-aatgagtgataccaaagaggttaaaagaaattagctcacaagccctcaaagcacaatacctaatttctacccatttttcaagt 33503786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 526
Target Start/End: Complemental strand, 5689198 - 5689109
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagcctta 526  Q
    ||||||| ||||| | ||||||| ||||| ||| |||||   |||| |||||||||||||||   |||||| ||||||||||||||||||    
T  5689198 caaagaccctcaaccctaaagttatctcctttgatttccctagtttctctctcttgaagctcttaccaaaaaatgaagaatgaagcctta 5689109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 224 - 526
Target Start/End: Complemental strand, 18674439 - 18674135
Alignment:
Q  224 gatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttaccc 321  Q
    |||| |||||||||| ||||||||| ||| |||||||||||||||| ||||||||||| |  ||||||||| ||||||||| ||||||||||||| ||||    
T  18674439 gatctactatgacaa-gagtgataccaaggggttacaagaaattagtttaaaagctcacaaagaacaaaccataatttctatccatttttcaagtcaccc 18674341  T
Q  322 acacacataaatgaatcctaagagaaaacattaaaggaag-attttaatcct--aataatgaaatctcactaaccaaggtgtttacaactgtttcctaac 418  Q
    |||| |||||||||||| ||||||||||||||||||||||  |||| |||||  |||||||||||||||||   |||||||||||| | ||||||| |||    
T  18674340 acactcataaatgaatcataagagaaaacattaaaggaagctttttgatccttcaataatgaaatctcactgctcaaggtgtttacgaatgtttcccaac 18674241  T
Q  419 ctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatg 518  Q
    | ||||| |||| | ||||||||||||  ||| | |||||||   ||| ||||||||| | |||| ||| ||   |||||   |||||||||||||||||    
T  18674240 ccaagaattaaactctcaccaaagaca--caatcctaaagtttattcctttggtttccaaagtttctctttcaaaaagcttttccaaaacatgaagaatg 18674143  T
Q  519 aagcctta 526  Q
    ||||||||    
T  18674142 aagcctta 18674135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 157 - 366
Target Start/End: Complemental strand, 2869798 - 2869588
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||   ||||| |||| | ||   |||||||| ||  || ||||||||||||  ||    
T  2869798 aacacaccaatattgtttacccagttcggtccaatatgacctactctaggggagagagtagctctccaatccactaagatgaa-agtgatacaaaggagt 2869700  T
Q  257 tacaagaaattagcttaaaagctcata--gaacaaac-cttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacatt 353  Q
    ||||||||||||||||||||||||| |  |||||||  | ||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| |    
T  2869699 tacaagaaattagcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaacact 2869601  T
Q  354 aaaggaagatttt 366  Q
    || ||||| ||||    
T  2869600 aacggaagctttt 2869588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 238 - 461
Target Start/End: Complemental strand, 28770799 - 28770572
Alignment:
Q  238 aagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatga 335  Q
    |||| |||||||||||  ||||||||||||||||||||||||  || |||||||||  ||||||||||||||||||||||| |  ||||| |   |||||    
T  28770799 aagaatgatacaaagatattacaagaaattagcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactc-gcaatga 28770701  T
Q  336 atcctaagagaaaacattaaagg-aagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaat 431  Q
    |||||||||||||||| |||||| ||  |||| |||||     |||||| ||||||||| ||||||||||||||| ||||| | |||| |||||| |||     
T  28770700 atcctaagagaaaacactaaaggaaacttttttatccttcagctaatgagatctcactacccaaggtgtttacaaatgttttccaaccaaagaaa-aaac 28770602  T
Q  432 tttcaccaaagacactcaaacttaaagttc 461  Q
      ||||||||||||||||| | ||||||||    
T  28770601 actcaccaaagacactcaaccctaaagttc 28770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 150 - 346
Target Start/End: Original strand, 12632532 - 12632725
Alignment:
Q  150 agaaaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatgg-agatagtaaccctttgatccactatgacaaagagtgatac 248  Q
    ||||||||||||| || |||||||| | ||||| ||| |||||||| ||||||||| || |||||  ||| ||  |||||||||||| |||||||| |||    
T  12632532 agaaaacaacacaccattattgtttactcagtttggttcaaaatgatctactctgaggggagata--aactctccgatccactatgataaagagtggtac 12632629  T
Q  249 aaagaggttacaagaaattagcttaaaagctcatagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagaga 346  Q
    |||||||||| |||||||||| ||| |  | |  |||||||||| ||| ||||| ||||||||||||| |||||||| |  |||||||||||| ||||    
T  12632630 aaagaggttaaaagaaattagtttagactcaccaagaacaaaccctaacttctatccatttttcaagtcacccacactc--aaatgaatcctacgaga 12632725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 351
Target Start/End: Complemental strand, 15903972 - 15903801
Alignment:
Q  179 agttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagc 278  Q
    |||||| ||||| |||||||||||||| ||||| || ||  ||   |||||||| || ||| |||||||||||| ||||||||||||| |||||| ||||    
T  15903972 agttcgatccaatatgacctactctgacggagagagaaaatctccaatccactaagataaa-agtgatacaaaggggttacaagaaat-agcttacaagc 15903875  T
Q  279 tcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaaca 351  Q
    ||| |  |||||||   ||||||||||||||||||||||| |||||||| | | ||||||||||| |||||||||    
T  15903874 tcacaaagaacaaattctaatttctacccatttttcaagtcacccacactc-tcaatgaatcctatgagaaaaca 15903801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 65 - 412
Target Start/End: Original strand, 3277906 - 3278251
Alignment:
Q  65 aacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatc 164  Q
    |||||||||||| | | ||| | ||| ||||||| |||||| ||||| ||||||||||||| ||| |||||||  ||  || ||    ||| ||||||||    
T  3277906 aacaacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagcaaaaaagataagaaataagagaggg----aaaaaacacatc 3278001  T
Q  165 aatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaa 264  Q
    || ||||||| | || ||| ||||||||||||||||| ||  ||||| || | | ||| |||| |||||||  | || ||||| |||||||||| |||||    
T  3278002 aacattgtttactcatttccgtccaaaatgacctactatggaggagagagcatcacttcgatctactatgatga-gaatgata-aaagaggttataagaa 3278099  T
Q  265 attagcttaaaagctcata-gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagat 363  Q
    |||||||||||| |||| | |||||||     |||||| | |||||||||| | || ||||| || || |||| |||||||||||||  ||||||||| |    
T  3278100 attagcttaaaacctcacaagaacaaattccgatttcttctcatttttcaattcactcacactcacaa-tgaaccctaagagaaaacgctaaaggaagtt 3278198  T
Q  364 ttta-atccta---ataatgaaatctcactaaccaaggtgtttacaactgttt 412  Q
    |||  ||||     ||||||||||||||||| ||||||||||||||| |||||    
T  3278199 ttttgatccgtcctataatgaaatctcactatccaaggtgtttacaaatgttt 3278251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 35397503 - 35397694
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctac-tctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagagg 255  Q
    |||||| ||||||||||| ||||||||||| |||  | |||||| ||||  |||||||| | | |||  |||||||| ||  || ||||||| |||||||    
T  35397503 aacacaccaatattgtttacccagttcggttcaatctaacctacatctggaggagatagcagctcttcaatccactaagatgaa-agtgatataaagagg 35397601  T
Q  256 ttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaa 349  Q
    |||| | ||||||||||||||| |||||  |||||||||| |||||||| ||||||||||||| ||||||| |  | |||||||||||||||||||    
T  35397602 ttacga-aaattagcttaaaaggtcataaagaacaaacct-aatttctatccatttttcaagtcacccaca-atctcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 56 - 281
Target Start/End: Complemental strand, 16388673 - 16388452
Alignment:
Q  56 agcatcagtaacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaa 155  Q
    |||| ||| |||||||||||| | ||||| |  |||||||||| |||||| | ||  |||| |||||||| ||| ||||||  ||| ||| |    ||||    
T  16388673 agcagcagcaacaacaacaaacagacctagatgtatgtgtgaagcaacactataagcatatccaaagcaataaagataagagagaaaggagg----aaaa 16388578  T
Q  156 caacacatcaatattgttttcccagttcggtccaaaa-tgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagag 254  Q
    ||||||| ||||||||||| ||||||| ||||||||| |||||||||||   ||||| || | | ||    |||||| ||| || ||| |||| ||||||    
T  16388577 caacacaccaatattgtttacccagtttggtccaaaaatgacctactctagaggagagagcagctctcctttccactttgataa-gagagatagaaagag 16388479  T
Q  255 gttacaagaaattagcttaaaagctca 281  Q
    |||||||||||||||||||||||||||    
T  16388478 gttacaagaaattagcttaaaagctca 16388452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 12632893 - 12633017
Alignment:
Q  373 aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggt 472  Q
    |||||| ||||||||  | ||||||||||||||| ||||||  |||| || ||||||| | |||  |||||||||||| | ||||||| ||||| |||||    
T  12632893 aataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaaccctaaagttatctcctttggt 12632992  T
Q  473 ttcctatgtttttctctcttgaagc 497  Q
    |||| | |||| |||||||||||||    
T  12632993 ttcccaagtttctctctcttgaagc 12633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 555
Target Start/End: Complemental strand, 4561026 - 4560903
Alignment:
Q  433 ttcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaa-catgaagaatgaagccttatataa 531  Q
    ||||||||||||||||||   ||||||| |||||  || ||||||| ||||||||||||||||| |   | |||| |||||||||||||| |||||| ||    
T  4561026 ttcaccaaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaa 4560927  T
Q  532 tgcacatgacctgagaaaatcgtg 555  Q
    |||||| | || ||||||||||||    
T  4560926 tgcacaagtcccgagaaaatcgtg 4560903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 419
Target Start/End: Complemental strand, 14699112 - 14698849
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || | ||||   |||||||||||  ||  ||  ||||||   ||    
T  14699112 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaaaggt--tacaaaagagt 14699015  T
Q  257 tacaagaaattagcttaaaagctcata---gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacatt 353  Q
    ||||||||||||||||| ||||| | |   ||||||  | |||||||||||||||||    || |||||||| | | |||||||||||||||||||||      
T  14699014 tacaagaaattagcttataagcttacacaagaacaagacctaatttctacccattttgt--gtcacccacactc-tcaatgaatcctaagagaaaacaca 14698918  T
Q  354 aaaggaagatttta-atcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacc 419  Q
    |||||||| ||||  |||||   |||| ||||||||||||| ||||||||||||||| ||||||| ||||    
T  14698917 aaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaa-tgtttcccaacc 14698849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 27149316 - 27149207
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    |||||||||||| ||| ||||||||||| ||||||||||  || |||||||  ||||| |||||||  ||||| |||| |||||||| ||  ||||||||    
T  27149316 agtgatacaaaggggtaacaagaaattaccttaaaagctcacaaagaacaagacttaacttctacctgttttttaagtcacccacactca-caatgaatc 27149218  T
Q  339 ctaagagaaaa 349  Q
    |||||||||||    
T  27149217 ctaagagaaaa 27149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 619 - 721
Target Start/End: Original strand, 40964530 - 40964633
Alignment:
Q  619 gttatccactaaatcgtgtcacgat-tcttcccttcacaccacaacttttgttgagacaaaacctccaaaactagaactagatcgtgtcacgatatcacc 717  Q
    |||||| ||||||||||||| |||| |||||||||    |||| | |||||| |||||||||||||||||||| |||||| |||||| || ||| |||||    
T  40964530 gttatctactaaatcgtgtcgcgatatcttccctttgttccacgatttttgtcgagacaaaacctccaaaacttgaactaaatcgtgccatgatttcacc 40964629  T
Q  718 aaat 721  Q
    ||||    
T  40964630 aaat 40964633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 310
Target Start/End: Original strand, 20522212 - 20522367
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || ||||||   |||||||||||  || |||| ||||||  |||    
T  20522212 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcaaccctccaatccactatgatgaa-agtgttacaaaagggt 20522310  T
Q  257 tacaagaaattagcttaaaagct---catagaacaaaccttaatttctacccatttt 310  Q
    ||||||||||||| ||| |||||    | |||||||  |||||||||||||||||||    
T  20522311 tacaagaaattagattataagcttacaaaagaacaagacttaatttctacccatttt 20522367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 283 - 424
Target Start/End: Complemental strand, 23078448 - 23078306
Alignment:
Q  283 agaacaaaccttaatttctacccatttttcaagttacccacacacataa--atgaatcctaagagaaaacattaaaggaagattttaatcct---aataa 377  Q
    |||||||  |||||||||||||||||| |   ||||||||||| |  ||  ||||| |||||||||| |||  |||||||| |||| |||||   ||| |    
T  23078448 agaacaagacttaatttctacccatttgt---gttacccacactctcaatgatgaaccctaagagaagacacaaaaggaagcttttgatccttccaatga 23078352  T
Q  378 tgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  23078351 tgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 23078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 283 - 460
Target Start/End: Complemental strand, 41586527 - 41586351
Alignment:
Q  283 agaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagattt----taatcctaataat 378  Q
    ||||||||| |||||||||||| ||||||||||| || ||| ||    |||| |||||||||||||||||||||| ||  |||    |  ||||  || |    
T  41586527 agaacaaactttaatttctacctatttttcaagtcactcactca---gaatggatcctaagagaaaacattaaagaaaactttttgattctcctcctagt 41586431  T
Q  379 gaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagtt 460  Q
     ||||||||||| ||||||||||||||||||||| | |||| |||  | ||  | ||||||||||||||||| | |||||||    
T  41586430 aaaatctcactacccaaggtgtttacaactgttttccaacccaag--agaagctctcaccaaagacactcaaccctaaagtt 41586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 7e-51; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 65 - 412
Target Start/End: Original strand, 37781766 - 37782114
Alignment:
Q  65 aacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatc 164  Q
    |||| ||||||| | ||||| | ||| ||||||| |||||||||||  ||||||||||||||||| |||||||  ||| ||    ||||||||||| | |    
T  37781766 aacatcaacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagcaacaaagataagaaataataga----agaaaacaacaaacc 37781861  T
Q  165 aatattgttttcccagttcggtccaaa-atgacctact-ctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaag 262  Q
    |||||||||| |||||||||||  ||| |||||||||| | ||  |||| |||||| ||   ||||||||| | ||| ||||||||||||||||||||||    
T  37781862 aatattgtttacccagttcggtttaaatatgacctacttcgga--gagagagtaactctccaatccactataataaa-agtgatacaaagaggttacaag 37781958  T
Q  263 aaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaagga- 359  Q
    |||||||||||||| |||| |  ||||||| ||||||||||||||||||||||||| ||| |||| | |||||||||| |||||||||||| |||| ||     
T  37781959 aaattagcttaaaaactcacaaagaacaaatcttaatttctacccatttttcaagtcacctacactcgtaaatgaatcttaagagaaaacactaaaagag 37782058  T
Q  360 agattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgttt 412  Q
    |  |||| || ||   |||||||||||||||||| ||||||||||||||| |||||    
T  37782059 actttttgattcttccaataatgaaatctcactacccaaggtgtttacaaatgttt 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 168 - 357
Target Start/End: Complemental strand, 34670756 - 34670570
Alignment:
Q  168 attgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaatt 267  Q
    |||||||  ||||||||||||||||||||||||| ||| |||||||| | | || ||||||||||||| || |     ||||||||||||||||||||||    
T  34670756 attgtttatccagttcggtccaaaatgacctactatgaaggagatagcagctctctgatccactatgataaggg----tacaaagaggttacaagaaatt 34670661  T
Q  268 agcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaag 357  Q
    ||||||| ||||  || |||||||| | ||||||||| ||||||||||||| || ||||| ||  ||||||||||||||||||||| |||||    
T  34670660 agcttaatagctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactca-caatgaatcctaagagaaaacactaaag 34670570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 361
Target Start/End: Original strand, 36175185 - 36175302
Alignment:
Q  243 tgatacaaagaggttacaagaaattagcttaaaagctcataga--acaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcct 340  Q
    ||||||||||||||| ||||||||||||||||||||||||| |  || |||  |||||||||||||||||  |||| || ||| |||   ||||||||||    
T  36175185 tgatacaaagaggtttcaagaaattagcttaaaagctcatacatgacgaactctaatttctacccattttctaagtcacacactcac---aatgaatcct 36175281  T
Q  341 aagagaaaacattaaaggaag 361  Q
    | |||||||||||||||||||    
T  36175282 atgagaaaacattaaaggaag 36175302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 531
Target Start/End: Complemental strand, 873401 - 873247
Alignment:
Q  375 taatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggttt 474  Q
    |||||| |||||||||  |||||||||||||| |||| || |||| |||||| ||||| ||||||||||||||||| | |||||||| || | |||| ||    
T  873401 taatgagatctcactactcaaggtgtttacaaatgttccccaacccaagaaa-aaattatcaccaaagacactcaaccctaaagttcccttctttgg-tt 873304  T
Q  475 cctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataa 531  Q
    || | |||| | ||||||| |||| || |||||||| ||||||||| ||||| ||||    
T  873303 cccaagtttctatctcttggagcttactcaaaacataaagaatgaatccttaaataa 873247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 176 - 350
Target Start/End: Complemental strand, 1983386 - 1983213
Alignment:
Q  176 cccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaa 275  Q
    ||||||||||||||| |||||||||| ||  |||||||| | | ||   |||||||| ||  || |||||||||||| |||||||||||||||||||  |    
T  1983386 cccagttcggtccaatatgacctactatgggggagatagcagctctccaatccactaggatcaa-agtgatacaaaggggttacaagaaattagcttgca 1983288  T
Q  276 agct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaac 350  Q
    ||||  || |||||||| | ||||||||| || |||||||||| ||| |||| | | ||||||||||||||||||||    
T  1983287 agctcacaaagaacaaaacataatttctatcc-tttttcaagtcacctacactc-tcaatgaatcctaagagaaaac 1983213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 39774327 - 39774287
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagctca 281  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  39774327 agtgatacaaataggttacaagaaattagcttaaaagctca 39774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 349
Target Start/End: Complemental strand, 18912400 - 18912276
Alignment:
Q  225 atccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttaccca 322  Q
    ||||||||||| || |||||||||||| ||| ||||||||||||| ||| || ||  || |||||||||| ||| || || ||||||||||||| || ||    
T  18912400 atccactatgataa-gagtgatacaaaaaggatacaagaaattagtttacaaactcacaaagaacaaaccctaaattatatccatttttcaagtcactca 18912302  T
Q  323 cacacataaatgaatcctaagagaaaa 349  Q
     || ||  |||||||||||||||||||    
T  18912301 aaccca-caatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 6743345 - 6743250
Alignment:
Q  331 aatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |||||||||||||||||||||  |||||||| |||| |||||   |||  |||||||||| || ||||||||||||||| ||||||| |||| ||||    
T  6743345 aatgaatcctaagagaaaacacaaaaggaagtttttgatccttccaatggtgaaatctcattacccaaggtgtttacaa-tgtttcccaacccaaga 6743250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 424
Target Start/End: Original strand, 10047371 - 10047643
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || | ||||   |||||||||||  || |||| ||||||   ||    
T  10047371 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaa-agtgttacaaaagagt 10047469  T
Q  257 tacaagaaattagcttaaaagctca---tagaacaaaccttaatttctacccatttttcaagttacccaca--cacataaatgaatcctaagagaaaaca 351  Q
    ||||||||||||||||| ||||| |    |||||||  | |||||||||||||||||    || |||||||  | ||  |||||||||||||| ||||||    
T  10047470 tacaagaaattagcttataagcttacacaagaacaagacctaatttctacccatttt--gtgtcacccacactctcaataatgaatcctaagacaaaaca 10047567  T
Q  352 ttaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
      ||||||||  |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  10047568 caaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 10047643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 16623222 - 16623128
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||||||| ||||||||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  16623222 atgaatcctaaaagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 16623128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 16628801 - 16628707
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||||||| ||||||||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  16628801 atgaatcctaaaagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 16628707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 4956239 - 4956313
Alignment:
Q  225 atccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcat--agaacaaaccttaatt 298  Q
    ||||||||||| || || ||||| ||||||||||||||||||||||| |||| |||||  |||||||||| |||||    
T  4956239 atccactatgataa-gaatgataaaaagaggttacaagaaattagctaaaaaactcataaagaacaaaccctaatt 4956313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 533
Target Start/End: Original strand, 36463643 - 36463738
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatataatg 533  Q
    ||||||| ||||| | |||||||  ||||  || ||||| | |||||||||||||||||||| || ||||| |||||||||||||||||| ||||||    
T  36463643 caaagaccctcaatcctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 3739373 - 3739476
Alignment:
Q  454 taaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcacatgacctgagaaaatcg 553  Q
    ||||||| ||||  ||| ||| ||| |||| |||||||||||    || ||||||||||||||||||| |||| |||||||||||| || |  |||||||    
T  3739373 taaagttatctcatttgattttctaagtttctctctcttgaaatgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcg 3739472  T
Q  554 tgcc 557  Q
    ||||    
T  3739473 tgcc 3739476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 559
Target Start/End: Original strand, 21704065 - 21704192
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagc-tc-acccaaaacatgaagaatgaagccttatataa 531  Q
    |||||||||||  |||| |||||||||  |||  ||| ||||  | |||| ||||||||||||| || || ||||||||||| ||||||| |||| |||     
T  21704065 tcaccaaagactttcaaccttaaagttacctcatttgatttctcaagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatag 21704164  T
Q  532 tgcacatgacctgagaaaatcgtgcccc 559  Q
    |||||||| ||||  |||||||||||||    
T  21704165 tgcacatgtcctgtcaaaatcgtgcccc 21704192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 873683 - 873638
Alignment:
Q  92 gtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaa 137  Q
    |||||||||||||||||||| ||||||||| |||| || |||||||    
T  873683 gtgtgaaacaacaccacaaacatattcaaaacaacgaagataagaa 873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 522
Target Start/End: Original strand, 37755162 - 37755251
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacc-caaaacatgaagaatgaagc 522  Q
    ||||||||||| ||||| | |||||||  |||| ||| ||| | | |||| ||||||||||| |||| | ||||||||||||||||||||    
T  37755162 tcaccaaagactctcaatcctaaagttacctcctttgattttccaagtttctctctcttgaaactcatctcaaaacatgaagaatgaagc 37755251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 262 - 644
Target Start/End: Complemental strand, 25116702 - 25116321
Alignment:
Q  262 gaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaagga 359  Q
    ||||||||||||||| |||| |  ||| || || |||||| |||||  ||||||||| | |||||| ||||||| |||| |||||||||||| ||||| |    
T  25116702 gaaattagcttaaaaactcacaaagaagaacccctaatttttaccc--ttttcaagtcatccacactcataaataaatcttaagagaaaacactaaagaa 25116605  T
Q  360 agatttt-aatcct---aataatgaaatctcactaacc-aaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaactt 454  Q
    |  |||| ||||||   |||||||||||||||||| || || |||||||||| ||||||| |||| || ||||||| | |||| ||||||||||||   |    
T  25116604 atttttttaatccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactct 25116505  T
Q  455 aaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcacatgacctgagaaaatcgt 554  Q
    ||||||| |||  ||| |||   | |||| |||||||| |  ||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||| |    
T  25116504 aaagttccctcgtttgatttttcaagtttctctctcttcatactctctcaaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatcat 25116405  T
Q  555 gccccgaggccgatatccacacgttctgccacgatttgcagttcgtacatagtatgaactggttgttatccactaaatcgtgtcacgatt 644  Q
    || |  |      | ||||||| |  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  25116404 gctctaa------tttccacacatcgtgccacgatttgcagttcgtacatagtataaactgattgttatccactaaatcgtgttacgatt 25116321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 153 - 534
Target Start/End: Original strand, 10996948 - 10997334
Alignment:
Q  153 aaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaag 252  Q
    |||||||||| ||||||||||| |||||||||||  | |||||||||||||  ||| || || ||| |||||||||||||  |   |||||||||||||     
T  10996948 aaacaacacaccaatattgtttacccagttcggtttagaatgacctactct--tggtgaaagcaactctttgatccactaata---agagtgatacaaat 10997042  T
Q  253 aggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaa- 349  Q
    | |||||||||||||| |||||||| |  || | |||||||| ||||||||||||||||||||||| |||| ||| ||    |||||||||| ||||||     
T  10997043 atgttacaagaaattaacttaaaagataacaaataacaaaccctaatttctacccatttttcaagtcaccctcactcacgt-tgaatcctaaaagaaaaa 10997141  T
Q  350 cattaaaggaagatttt-------aatcctaataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaat----aaattttcacc 438  Q
    || ||||||||| ||||       | ||||  |||||| || |||||| |||||||||||| || ||||||| ||||||||||||    ||| | |||||    
T  10997142 cactaaaggaagcttttttttatcattcctc-taatgacatttcactatccaaggtgtttaaaaatgtttcccaacctaagaaattaagaaactctcacc 10997240  T
Q  439 aaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgc 534  Q
    | | |||||||  |||||||||| |||  |||||||| || ||||  ||||||| |||||  |||||| |||||||||||||| ||||||||||||    
T  10997241 acatacactcagccttaaagttccctcatttggtttcataagttt--ctctcttcaagctttcccaaagcatgaagaatgaagtcttatataatgc 10997334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 153 - 366
Target Start/End: Complemental strand, 35109645 - 35109433
Alignment:
Q  153 aaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaag 252  Q
    |||||||||| | ||||||||| | ||||| |||||||||||||||| ||||| ||||| |  | | || ||||||||||||| || ||  ||||||||     
T  35109645 aaacaacacaccgatattgtttactcagtttggtccaaaatgacctaatctga-ggagagacaagctctctgatccactatgataa-gatagatacaaat 35109548  T
Q  253 aggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaac 350  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||||||| || ||||| ||  ||||||||||| |||||||     
T  35109547 aggttacaagaaattagcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactca-caatgaatcctacgagaaaat 35109449  T
Q  351 attaaaggaagatttt 366  Q
    | ||||||||| ||||    
T  35109448 actaaaggaagctttt 35109433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 92 - 361
Target Start/End: Complemental strand, 32737163 - 32736897
Alignment:
Q  92 gtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatcaatattgttttcccagttcggtccaaa 191  Q
    ||||||| |||||||||||||||| ||||||| ||||  | ||||| |||  ||    ||||||| | |||  |||||||| | | ||| ||| ||||||    
T  32737163 gtgtgaagcaacaccacaaatataatcaaagctacaatgaaaagaaagaagagaa---agaaaactagacacaaatattgtgtactcagatcgatccaaa 32737067  T
Q  192 atgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcat--agaacaa 289  Q
    |||||||||||||   |||| || ||| || ||||| |||||||  ||| |||||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  32737066 atgacctactctgggagagagagaaactctctgatcaactatgatgaag-gtgatacaaagaggttacaaaaaattagcttaaaagttcataaagaacaa 32736968  T
Q  290 accttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag 361  Q
    ||| ||||||||||||||||||||||| | | |||| ||  ||||||||||||||||||||  |||||||||    
T  32736967 accctaatttctacccatttttcaagtcatcgacactca-caatgaatcctaagagaaaaccctaaaggaag 32736897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 11032359 - 11032268
Alignment:
Q  223 tgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttca 313  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||||| |||||| ||  || |||||||| | ||||||||||||||||||||    
T  11032359 tgatccactatgataat-agtgatataaagaggttacaagaaattagattaaaaactcacaaagaacaaaacataatttctacccatttttca 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 424
Target Start/End: Complemental strand, 16124621 - 16124349
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  | ||||||||||||| |||||||| ||||  ||||| || | ||||   |||||||||||  || |||| ||||||   ||    
T  16124621 aacacaccaagattgttgactcagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaa-agtgttacaaaagagt 16124523  T
Q  257 tacaagaaattagcttaaaagct--cat-agaacaaaccttaatttctacccatttttcaagttacccacac--acataaatgaatcctaagagaaaaca 351  Q
    ||||||||||||||||| |||||  ||| |||||||  | |||||||||||||||||    |||||||||||   ||  |||||||||||||||||||||    
T  16124522 tacaagaaattagcttataagcttacataagaacaagacctaatttctacccatttt--gtgttacccacactttcaataatgaatcctaagagaaaaca 16124425  T
Q  352 ttaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
      ||||||||  |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  16124424 caaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 16124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 366
Target Start/End: Complemental strand, 918505 - 918375
Alignment:
Q  238 aagagtgatacaaagaggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagt-tacccacacacataaatg 334  Q
    ||||||||||||||||  ||||||||||||| |||| || |||| |  ||||||||| ||||||||||||||||||||| |  || || || ||  ||||    
T  918505 aagagtgatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatttttcaattccactcaaaccca-caatg 918407  T
Q  335 aatcctaagagaaaacattaaaggaagatttt 366  Q
    ||||||||||||||||| ||| ||||| ||||    
T  918406 aatcctaagagaaaacaataatggaagctttt 918375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 406
Target Start/End: Original strand, 13598390 - 13598645
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || | |||||  |||||||||||  || |||| ||||||   |     
T  13598390 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaa-agtgttacaaaagaga 13598488  T
Q  257 tacaagaaattagcttaaaagctca---tagaacaaaccttaatttctacccatttttcaagttacccacacacataa--atgaatcctaagagaaaaca 351  Q
    ||||||||||||||||| ||||| |    |||||||  |||||||||||| ||||||    || |||||||| |  ||  ||||||||||||||||||||    
T  13598489 tacaagaaattagcttataagcttacacaagaacaagacttaatttctactcatttt--gtgtcacccacactctcaatgatgaatcctaagagaaaaca 13598586  T
Q  352 ttaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaa 406  Q
      ||||||||  |||| |||||   |||  ||||||||||||| |||||||||||||||    
T  13598587 caaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 13598645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 37918719 - 37918809
Alignment:
Q  225 atccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcatagaacaaaccttaatttctacccatttttcaagt 316  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||||| ||  ||||||||| || || || ||| ||||||| |||||||||||    
T  37918719 atccactatgaaaataagtgatacaaagatgttacaagaaattagatttcaagctcata-aagaacccctaaattctacctatttttcaagt 37918809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 419
Target Start/End: Original strand, 32889570 - 32889695
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcacta 390  Q
    ||||||||||||||||||||  | |||||||| | | |||||||||||||||||||||  ||| |||| |||| | |||   |||  |||||||||||||    
T  32889570 taatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaaca-caaaagaagcttttgaaccttccaatggtgaaatctcacta 32889667  T
Q  391 accaaggtgtttacaactgtttcctaacc 419  Q
     ||||||||||||||| ||||||| ||||    
T  32889668 cccaaggtgtttacaa-tgtttcccaacc 32889695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 2263273 - 2263326
Alignment:
Q  485 tctctcttgaagctc-acccaaaacatgaagaatgaagccttatataatgcaca 537  Q
    |||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  2263273 tctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcaca 2263326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 17345525 - 17345430
Alignment:
Q  257 tacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaaca 351  Q
    |||||||||||||| ||| ||| || |  ||||||| | |||||||||||||||||| |||| |||||||| | | |||||||| ||||||||||||    
T  17345525 tacaagaaattagcataagagcccacaaagaacaaaacctaatttctacccattttttaagtcacccacactc-ttaatgaatcttaagagaaaaca 17345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 45644596 - 45644685
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagcctta 526  Q
    ||||||| ||||| | ||||||| ||||| ||| |||||   ||||||||||||||||||||  ||||||| ||||||||| ||||||||    
T  45644596 caaagaccctcaaccctaaagttatctcctttgatttccctagtttttctctcttgaagctcttcccaaaaaatgaagaataaagcctta 45644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 526
Target Start/End: Original strand, 8871343 - 8871390
Alignment:
Q  480 gtttttctctcttgaagctc-acccaaaacatgaagaatgaagcctta 526  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  8871343 gtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 22819559 - 22819613
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaa 349  Q
    ||||||||| ||||||||||||| |||||||| | | |||||||||||||||||||    
T  22819559 taatttctaaccatttttcaagtcacccacactc-tcaatgaatcctaagagaaaa 22819613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 528
Target Start/End: Original strand, 28265807 - 28265898
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctca-cccaaaacatgaagaatgaagccttata 528  Q
    ||||||| ||||| | |||||||  |||| ||| |||||   |||| |||||||||||||||  ||||||| ||||||||||||||||||||    
T  28265807 caaagaccctcaaccctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 3281875 - 3281969
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||| |||||||||| |||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  3281875 atgaaccctaagagaagacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 3281969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 223 - 499
Target Start/End: Complemental strand, 30518167 - 30517886
Alignment:
Q  223 tgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacc 320  Q
    ||||||||||||| || ||||||||||||||||||||| |||| || |||||||| ||| |  ||||||||||||||||||||| |||||||||||||||    
T  30518167 tgatccactatgataa-gagtgatacaaagaggttacatgaaactaacttaaaagttcacaaagaacaaaccttaatttctacctatttttcaagttacc 30518069  T
Q  321 cacacacataaatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaac----caaggtgtttacaactgtttc 413  Q
    ||||| || ||||||||| || ||||||||| ||||||||| |||| |||||   ||||||||||||||||| ||    |||  | ||||||| ||||||    
T  30518068 cacactcacaaatgaatctta-gagaaaacactaaaggaagtttttgatccttccaataatgaaatctcactcactacccaaaatatttacaaatgtttc 30517970  T
Q  414 ctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc 499  Q
    |||| |||||||||||| | |||||||||||||||||   |||||||| |||  ||| ||||| | |  |||||||||||||||||    
T  30517969 ctaatctaagaaataaactctcaccaaagacactcaactctaaagttccctcatttgatttcccaag--tttctctcttgaagctc 30517886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 65 - 424
Target Start/End: Complemental strand, 33721753 - 33721393
Alignment:
Q  65 aacaacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatc 164  Q
    |||||||||||| |  |||| | ||| |||||||||| ||||||||| ||||||||||||||||| ||||||  ||| ||| |    ||||||||||| |    
T  33721753 aacaacaacaaacatccctagatctaagtgtgaaacatcaccacaaacatattcaaagcaacaaagataagagagaaaggaaga---aaaacaacacacc 33721657  T
Q  165 aatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaa 264  Q
    ||||||  ||  ||||||  ||||||||||| ||||| ||  | ||| |  ||| || ||||||||||||| || || | ||||||||||||||||||||    
T  33721656 aatattacttatccagtttagtccaaaatgatctactatggggaagagaacaactctctgatccactatgataa-gaattatacaaagaggttacaagaa 33721558  T
Q  265 attagcttaaaagctcat--agaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaaga 362  Q
    ||||| |||||| |||||  |||||||| | ||||||   ||||||||| | || || ||||| | ||||||||||||||||||||||| |||||| ||     
T  33721557 attagtttaaaaactcataaagaacaaaacctaattttcccccattttttaggtcacacacactcctaaatgaatcctaagagaaaacactaaagggagc 33721458  T
Q  363 ttt----taatcctaataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |||    | || | ||||||||||||||||| || ||||||||||||| ||||||| |||||||||    
T  33721457 tttttcatcattccaataatgaaatctcact-acaaaggtgtttacaaatgtttcccaacctaaga 33721393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 360
Target Start/End: Complemental strand, 1115141 - 1115006
Alignment:
Q  225 atccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcataga--acaaaccttaatttctacccatttttcaagttaccca 322  Q
    ||||||||||| || || ||||||||| |||||||||||||| | |||||||||||| | |  ||||||| ||||||||| ||||||||||||| |||||    
T  1115141 atccactatgataa-gaatgatacaaataggttacaagaaatcaacttaaaagctcaaaaataacaaaccctaatttctatccatttttcaagtcaccca 1115043  T
Q  323 cacacataaatgaatcctaagagaaaacattaaaggaa 360  Q
    ||| ||  |||||||  ||||||||||||  |||||||    
T  1115042 cactca-caatgaatattaagagaaaacacaaaaggaa 1115006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 165 - 366
Target Start/End: Original strand, 99156 - 99356
Alignment:
Q  165 aatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaa 264  Q
    |||||||||| | | |||| || ||||||||| |||||| | | ||||||||||  | ||||||| |||||  | || |||||| |  | ||||||||||    
T  99156 aatattgtttacacggttcagtgcaaaatgacatactctcaagaagatagtaactttctgatccattatgatga-gaatgatacgattaagttacaagaa 99254  T
Q  265 attagcttaaaagctcataga--acaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaaga 362  Q
    ||||||||| ||||||| |||  |||||| ||||||||||||||||||| ||||||| ||||| ||  ||||||||||| ||||||| |  ||||||||     
T  99255 attagcttagaagctcacagagaacaaactttaatttctacccattttt-aagttactcacactca-caatgaatcctatgagaaaataccaaaggaagc 99352  T
Q  363 tttt 366  Q
    ||||    
T  99353 tttt 99356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 14521803 - 14521874
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagatttt 366  Q
    |||||||||| ||||||||| || |||||||| | | ||| ||||||||||||||||||||||||||||||||    
T  14521803 taatttctacacatttttcatgtcacccacactc-tcaataaatcctaagagaaaacattaaaggaagatttt 14521874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 5572173 - 5572078
Alignment:
Q  331 aatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |||||||||||||||||||||  |||||||| |||| ||| |   |||| ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  5572173 aatgaatcctaagagaaaacacaaaaggaagcttttgatcattccaatagtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 5572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 424
Target Start/End: Complemental strand, 31086495 - 31086309
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagctcatagaa---caaaccttaatttctacccatttttcaagttacccacacacataaatgaat 337  Q
    |||| |||||||  ||||||||||||||||||| ||||| | | ||   |||  | |||||||||||||||||    || |||||||| ||  |||||||    
T  31086495 agtgttacaaaggagttacaagaaattagcttataagcttacacaagagcaagacctaatttctacccattttgt--gtcacccacactcaataatgaat 31086398  T
Q  338 cctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||||||||||| ||| |||| |||| |||||   |||  ||||||||||| | ||||||||||||||| ||||||  |||||||||    
T  31086397 cctaagagaaaacataaaaagaagcttttgatccttccaatggtgaaatctcacaacccaaggtgtttacaa-tgtttctcaacctaaga 31086309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 31979644 - 31979757
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcacta 390  Q
    ||||||||||||||||||   || |||||||| | | |||||||||||||||||||||  |||||||| |||| |||||   |||  |||||||||||||    
T  31979644 taatttctacccatttttgt-gtcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcacta 31979741  T
Q  391 accaaggtgtttacaa 406  Q
     |||||||||||||||    
T  31979742 cccaaggtgtttacaa 31979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 18233013 - 18233091
Alignment:
Q  331 aatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaa 406  Q
    |||||||||||||||||||||  |||||||| |||| |||||   |||  ||||||||||||| |||||||||||||||    
T  18233013 aatgaatcctaagagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 18233091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 20504932 - 20505012
Alignment:
Q  240 gagtgatacaaagaggttacaagaaattagcttaaaagctc--atagaacaaaccttaatttctacccatttttcaagttac 319  Q
    |||| ||||||||||||||||||||||||| ||| ||||||  | | || |||||||||||||||| || ||||||||||||    
T  20504932 gagtaatacaaagaggttacaagaaattagtttacaagctcaaaaataaaaaaccttaatttctactca-ttttcaagttac 20505012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 419
Target Start/End: Original strand, 31936696 - 31936832
Alignment:
Q  283 agaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatg 379  Q
    |||||||| | ||||||||||||||||||||  | |||||||| | | |||||||||||||||||||||  |||| |   |||| |||||   |||  ||    
T  31936696 agaacaaatcctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaaca-caaagaagctttttgatccttccaatggtg 31936793  T
Q  380 aaatctcactaaccaaggtgtttacaactgtttcctaacc 419  Q
    ||||||||||| ||||||||||||||| ||||||| ||||    
T  31936794 aaatctcactacccaaggtgtttacaa-tgtttcccaacc 31936832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 21356253 - 21356299
Alignment:
Q  377 atgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  21356253 atgaaatctcactacccaaggtgtttacaa-tgtttcctaacccaaga 21356299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 689
Target Start/End: Complemental strand, 30517780 - 30517709
Alignment:
Q  619 gttatccactaaatcgtgtcacga-ttcttcccttcacaccacaacttttgttgagacaaaacctccaaaac 689  Q
    |||||||||||||| ||||||||| |||||||||||    ||||| |||||  |||||||||||||||||||    
T  30517780 gttatccactaaattgtgtcacgatttcttcccttcgtggcacaatttttgccgagacaaaacctccaaaac 30517709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 526
Target Start/End: Original strand, 3039198 - 3039244
Alignment:
Q  480 gtttttctctcttgaagctcacccaaaacatgaagaatgaagcctta 526  Q
    |||||||||||||||||||| | |||||  |||||||||||||||||    
T  3039198 gtttttctctcttgaagctctctcaaaaattgaagaatgaagcctta 3039244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 4630119 - 4630195
Alignment:
Q  330 aaatgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgttta 403  Q
    ||||||||||||||||||||||  |||||||| |||| |||||   |||  ||||||||||||| |||| |||||||    
T  4630119 aaatgaatcctaagagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaatgtgttta 4630195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 10077270 - 10077149
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  |||| |||||||||| |||||||| ||||  ||||| || | ||||   |||||||||||  || |||| |||||| | ||    
T  10077270 aacacaccaagattgttgacccaattcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaa-agtgttacaaaaaagt 10077172  T
Q  257 tacaagaaattagcttaaaagct 279  Q
    ||||||||||||||||| |||||    
T  10077171 tacaagaaattagcttataagct 10077149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 21247124 - 21247087
Alignment:
Q  240 gagtgatacaaagaggttacaagaaattagcttaaaag 277  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  21247124 gagtaatacaaaaaggttacaagaaattagcttaaaag 21247087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 7e-45; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 150 - 554
Target Start/End: Original strand, 29100144 - 29100556
Alignment:
Q  150 agaaaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgataca 249  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| ||| ||| |   | ||| || | | ||    |||||||||| |||||||||||||    
T  29100144 agaaaacaacacaccaatattgtttacccagttcggtccaaaattacccactatagggaagagagcagctctccattccactatgataaagagtgataca 29100243  T
Q  250 aagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaa 347  Q
    ||||||||| ||||||||||||||||| ||  || |||||||||| |||||||||| | |||||||||| ||| |||| |||||||||||| |||||||     
T  29100244 aagaggttataagaaattagcttaaaaactcacaaagaacaaaccctaatttctactcgtttttcaagtcacctacactcataaatgaatcataagagat 29100343  T
Q  348 aacattaaagg-aagattttaatcct---aataatgaaatctcactaaccaaggtgtttac--aactgtttcctaacctaagaaataaattttcaccaaa 441  Q
    || | |||||| ||  |||| |||||   | ||||  |||||||| | || | ||||| ||  || ||||||| ||||||||||||||| | ||||||||    
T  29100344 aatactaaaggaaacttttttatccttcaattaatataatctcaccacccgatgtgttcacaaaaatgtttcccaacctaagaaataaactctcaccaaa 29100443  T
Q  442 gacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcacatgac 541  Q
    ||||||||| | |||| ||| |||| ||||||||| | |||| | |||||  || |||  |||||  ||||||||| |||||||| ||| |||||| | |    
T  29100444 gacactcaaccctaaacttccctcctttggtttcccaagtttctttctctaaaaactctaccaaagaatgaagaataaagccttaaatagtgcacaaggc 29100543  T
Q  542 ctgagaaaatcgt 554  Q
      |||||||||||    
T  29100544 tcgagaaaatcgt 29100556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 223 - 530
Target Start/End: Complemental strand, 5366353 - 5366035
Alignment:
Q  223 tgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacc 320  Q
    |||||||||||||  || |||||||||||||||||||||||||||| ||||||| |||| |  ||| ||| |||||||||||||| |||||| ||| |||    
T  5366353 tgatccactatgatgaa-agtgatacaaagaggttacaagaaattatcttaaaatctcacaatgaaaaaatcttaatttctacccttttttctagtcacc 5366255  T
Q  321 cacacacataaatgaatcctaagagaaaacattaaaggaagatttt-aatcct----aataatgaaatctcactaaccaaggtgtttacaactgtttcct 415  Q
    |||||  |||||||||||||||| ||||||| ||||||||  ||||  |||||    | || |||||||| |||| ||||||||||||||| ||||| |     
T  5366254 cacactaataaatgaatcctaagcgaaaacactaaaggaaacttttcgatccttccaattattgaaatcttactacccaaggtgtttacaaatgttttcc 5366155  T
Q  416 aacctaagaaataaattttcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttt-----tctctcttgaagctcacccaaaa-ca 509  Q
    |||  |||||||||| | ||||||||||| ||||| | ||||||| |||||  |||||||| || ||||     ||||||||||||| ||| ||||| ||    
T  5366154 aactcaagaaataaactctcaccaaagactctcaaccctaaagttatctcctatggtttcccatattttttttctctctcttgaagc-cacacaaaagca 5366056  T
Q  510 tgaagaatgaagccttatata 530  Q
    ||||||||||||| |||||||    
T  5366055 tgaagaatgaagctttatata 5366035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 71 - 557
Target Start/End: Original strand, 21156339 - 21156817
Alignment:
Q  71 aacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatcaatatt 170  Q
    |||||| ||||||| | ||| | |||||||||||||| ||  ||||||||||||||||| ||||||| ||| |||    ||||||||||||| |||||||    
T  21156339 aacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaacaaagataagaaagaaggga----agaaaacaacacaccaatatt 21156434  T
Q  171 gttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagc 270  Q
    ||||  | | ||||| ||||||| || |||| ||  |||   |  |||  | ||||||||||||| ||| | |||||||||||| ||| || ||||||||    
T  21156435 gtttatcaaattcggcccaaaataacatactatggaggaatgaccaactttctgatccactatgataaa-actgatacaaagagattaaaaaaaattagc 21156533  T
Q  271 ttaaaag--ctcatagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-atttta 367  Q
    |||||||  | || ||||||||   | ||||||| |||||||| |||| |   |||| ||||||||| ||||||||||||||| ||||| |||  ||||     
T  21156534 ttaaaagttcacaaagaacaaaatcttatttctatccattttt-aagtcataaacactcataaatgattcctaagagaaaacactaaagcaagctttttg 21156632  T
Q  368 atcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctct 464  Q
    ||| |   ||||||||||||||| |||| ||||||||||| | ||||||| || | || ||||| |   |        ||||||||   |||||||| ||    
T  21156633 atcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaatccaaaaaatatacgct--------acactcaactctaaagttccct 21156724  T
Q  465 ccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcacatgacctgagaaaatcgtgcc 557  Q
    ||||| |||||  | |||| |||||||||||||||   ||||||||||||||||||| |||| || ||| ||| |||  |||||||| |||||    
T  21156725 ccattagtttcacaagtttctctctcttgaagctctttcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaattgtgcc 21156817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 4386939 - 4386853
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacac 325  Q
    |||||||||||  ||||||||||||||||||||||||||  || |||||||| | |||||||||| |||||||||||| ||||||||    
T  4386939 agtgatacaaatgggttacaagaaattagcttaaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcacccacac 4386853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 157 - 424
Target Start/End: Original strand, 21711215 - 21711484
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || | | ||   |||||||||||  || |||| ||||||||| |    
T  21711215 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagctctcaaatccactatgatgaa-agtgttacaaagag-t 21711312  T
Q  257 tacaagaaattagcttaaaagctcatagaa---caaaccttaatttctacccatttttcaagttacccacacacataa--atgaatcctaagagaaaaca 351  Q
    ||||||||||||||||||||||| | | ||   |||  | |||||||||||||||| |   ||||||||||| |  ||  ||||||||||||||||||||    
T  21711313 tacaagaaattagcttaaaagcttacacaagagcaagacctaatttctacccatttgt---gttacccacactctcaataatgaatcctaagagaaaaca 21711409  T
Q  352 ttaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
      |||||||| |||| |||||   |||  |||||||||||||  |||||||||||||| ||||||| |||| ||||    
T  21711410 caaaaggaagcttttgatccttccaatggtgaaatctcactactcaaggtgtttacaa-tgtttcccaacccaaga 21711484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 419
Target Start/End: Original strand, 35925555 - 35925735
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagctca---tagaacaaaccttaatttctacccatttttcaagttacccacacacataa-atgaa 336  Q
    |||| ||||||||| |||||||||||||| ||| ||||| |   ||||||||| | |||||||||||||||| |   || |||||| | || || |||||    
T  35925555 agtgttacaaagag-ttacaagaaattagtttataagcttacactagaacaaaacctaatttctacccatttgt---gtcacccactctcacaatatgaa 35925650  T
Q  337 tcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacc 419  Q
    |||||||||||||||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| ||||    
T  35925651 tcctaagagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacc 35925735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 424
Target Start/End: Complemental strand, 8370562 - 8370313
Alignment:
Q  176 cccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaa 275  Q
    ||||||||||||||| |||||||| ||||  ||||| || | | ||   |||||||||||  || |||| ||||||||| ||||||||||||||||||||    
T  8370562 cccagttcggtccaatatgacctaatctgggggagagagcagctctccaatccactatgatgaa-agtgttacaaagag-ttacaagaaattagcttaaa 8370465  T
Q  276 agctcata---gaacaaaccttaatttctacccatttttcaagttacccacacacataa-atgaatcctaagagaaaacattaaaggaagattttaatcc 371  Q
    |||| | |   ||||||  | |||||||||||||||| |   || |||||| | || || ||||||||||||||||||||  |||||||  |||| ||||    
T  8370464 agcttacacaagaacaagacataatttctacccatttgt---gtcacccactctcacaatatgaatcctaagagaaaacacaaaaggaaacttttgatcc 8370368  T
Q  372 t---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    |   |||  ||||||||||||| ||||| ||||||||| ||||||| |||| ||||    
T  8370367 ttccaatggtgaaatctcactacccaagatgtttacaa-tgtttcccaacccaaga 8370313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 25517069 - 25517143
Alignment:
Q  253 aggttacaagaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacac 325  Q
    |||||| |||||||||||||||||||||| |  ||||||||| ||||||||||  ||||||||||| ||||||||    
T  25517069 aggttataagaaattagcttaaaagctcacaaagaacaaaccctaatttctacttatttttcaagtcacccacac 25517143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 426
Target Start/End: Original strand, 8126719 - 8126894
Alignment:
Q  255 gttacaagaaattagcttaaaagctcata---gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaaca 351  Q
    ||||||||||||||||||| ||||| | |   ||||||  ||||||||||||||||||||   || |||||||| | | |||||||| ||||||||||||    
T  8126719 gttacaagaaattagcttataagcttacaaaagaacaatacttaatttctacccatttttgt-gtcacccacactc-tcaatgaatcttaagagaaaaca 8126816  T
Q  352 ttaaaggaagatttta-atcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaa 426  Q
      ||| |||| ||||  |||||   ||| |||||||||||||| ||||||||||||||| ||||||| |||| ||||||    
T  8126817 caaaaagaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaagaaa 8126894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 36029261 - 36029355
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||||||||||||||||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  36029261 atgaatcctaagagaaaacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 36029355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 29196642 - 29196730
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagcctta 526  Q
    ||||||| ||||| | |||||||  |||| ||| ||||| | |||||||||||||| ||||| | ||||| ||||||||||||||||||    
T  29196642 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgtagctctctcaaaaaatgaagaatgaagcctta 29196730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 530
Target Start/End: Original strand, 2075352 - 2075403
Alignment:
Q  480 gtttttctctcttgaagc-tcacccaaaacatgaagaatgaagccttatata 530  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2075352 gtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 1736400 - 1736279
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||||||||||  ||||||||||||||| |||||||| ||||  ||||| || | ||||   |||||||||||  || |||| ||||||   ||    
T  1736400 aacacaccaatattgttgacccagttcggtccaatatgacctaatctgggggagagagcagccctccaatccactatgatgaa-agtgttacaaaagagt 1736302  T
Q  257 tacaagaaattagcttaaaagct 279  Q
    |||||||||||| |||| |||||    
T  1736301 tacaagaaattaacttataagct 1736279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 16264517 - 16264611
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||| |||||||||| |||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  16264517 atgaaccctaagagaagacacaaaaggaagcttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 16264611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 44658637 - 44658592
Alignment:
Q  92 gtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaa 137  Q
    ||||||||||||||||||||||||  |||| ||||||| |||||||    
T  44658637 gtgtgaaacaacaccacaaatataaccaaaacaacaaagataagaa 44658592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 238 - 450
Target Start/End: Original strand, 14754 - 14971
Alignment:
Q  238 aagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaa-tg 334  Q
    |||||||||||||||||||||| |||||||||||||||||||  || ||||| |||| || || ||||| ||||||||||| |||||||| || ||| ||    
T  14754 aagagtgatacaaagaggttacgagaaattagcttaaaagctcacaaagaactaaccctagttcctacctatttttcaagtcacccacactcacaaagtg 14853  T
Q  335 aatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaat 431  Q
    ||||||||||||||||| |||||| || |||| || ||   |||||| ||||||||| | | ||||| ||||||| ||||||| |||| || |||||||     
T  14854 aatcctaagagaaaacactaaagg-agtttttgatgcttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaac 14952  T
Q  432 tttcaccaaagacactcaa 450  Q
    | |||||||||||| ||||    
T  14953 tctcaccaaagacattcaa 14971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 150 - 476
Target Start/End: Complemental strand, 102606 - 102277
Alignment:
Q  150 agaaaacaacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgataca 249  Q
    ||||||| ||||| ||||||| ||| ||||||||| | |||||| ||||| | ||   |||| |  ||| || |||||||| |||| || ||||||||||    
T  102606 agaaaacgacacaccaatattatttacccagttcgattcaaaattacctagtgtggaagagagaacaactctctgatccacaatgataa-gagtgataca 102508  T
Q  250 aagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaa 347  Q
    ||||||||||||||||||| ||||||||||  || | |||||||| ||||||||||||||||||||||| || ||||| ||| ||| ||| | |||||||    
T  102507 aagaggttacaagaaattatcttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcacacacactcat-aataaattcgaagagaa 102409  T
Q  348 aacattaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaaga 443  Q
    |||| ||||||| |  |||| |||||     |||| |||||| ||| |||||||||||| ||| ||||| | ||||  ||||||||| | |||||||| |    
T  102408 aacactaaaggatgctttttgatccttcctctaataaaatcttacttaccaaggtgttttcaaatgttttccaaccctagaaataaaatctcaccaaa-a 102310  T
Q  444 cactcaaacttaaagttctctccattggtttcc 476  Q
    |||||||   ||||||||  ||| |||||||||    
T  102309 cactcaacactaaagttccttcctttggtttcc 102277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 28617384 - 28617172
Alignment:
Q  100 caacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaa-cacatcaatattgttttcccagttcggtccaaaatgacct 198  Q
    |||||||||||  ||||||||||||||||| ||||| | ||| |||    ||||||||| |||| ||||||||||| ||||||||||||||| |||||||    
T  28617384 caacaccacaagcatattcaaagcaacaaagataagcaagaaagga----agaaaacaaacacaccaatattgtttacccagttcggtccaatatgacct 28617289  T
Q  199 actctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaa 296  Q
    ||||||  ||||| || | | ||   |||||||| ||  || |||||||||| | ||||||||||||||||||||||||||  || |||||||| | |||    
T  28617288 actctgggggagagagcagctctccaatccactaagatgaa-agtgatacaatggggttacaagaaattagcttaaaagctcacaaagaacaaaacctaa 28617190  T
Q  297 tttctacccatttttcaa 314  Q
    |||||||| |||||||||    
T  28617189 tttctacctatttttcaa 28617172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 5817292 - 5817166
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    |||||||||||| |||||||||||||| || ||| ||||  || |||||||| | ||||||||| ||||||||||||| || ||||| | | ||||||||    
T  5817292 agtgatacaaaggggttacaagaaatttgcataagagctcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactc-tcaatgaatc 5817194  T
Q  339 ctaagagaaaacattaaaggaagatttt 366  Q
    |||||| ||||||  |||||||| ||||    
T  5817193 ctaagaaaaaacacaaaaggaagctttt 5817166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 12098113 - 12098202
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagcctta 526  Q
    ||||||| ||||| | |||||||  |||| ||| ||||| | ||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  12098113 caaagaccctcaaccctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagcctta 12098202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 9185141 - 9185009
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-attttaatcct---aataatgaaatctcact 389  Q
    ||||||||||||||||||||  | |||||||| | ||| |||||||||||||||||||   |||||||  |||| |||||   |||  ||||||||||||    
T  9185141 taatttctacccatttttcatatcacccacactcttaa-tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcact 9185043  T
Q  390 aaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    | ||||||||||||||| ||||||| |||| ||||    
T  9185042 acccaaggtgtttacaa-tgtttcccaacccaaga 9185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 9189974 - 9189842
Alignment:
Q  294 taatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-attttaatcct---aataatgaaatctcact 389  Q
    ||||||||||||||||||||  | |||||||| | ||| |||||||||||||||||||   |||||||  |||| |||||   |||  ||||||||||||    
T  9189974 taatttctacccatttttcatatcacccacactcttaa-tgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcact 9189876  T
Q  390 aaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    | ||||||||||||||| ||||||| |||| ||||    
T  9189875 acccaaggtgtttacaa-tgtttcccaacccaaga 9189842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Complemental strand, 27073744 - 27073644
Alignment:
Q  436 accaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaag-ctcacccaaaacatgaagaatgaagccttatataatgc 534  Q
    ||||||||||||||| | |||| || ||||| ||| || | ||||||| |||||||||||| |  ||| ||||| |||||||||||| ||||||||||||    
T  27073744 accaaagacactcaatcataaaattatctcctttgattccttatgtttatctctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgc 27073645  T
Q  535 a 535  Q
    |    
T  27073644 a 27073644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Original strand, 27204569 - 27204669
Alignment:
Q  436 accaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaag-ctcacccaaaacatgaagaatgaagccttatataatgc 534  Q
    ||||||||||||||| | |||| || ||||| ||| || | ||||||| |||||||||||| |  ||| ||||| |||||||||||| ||||||||||||    
T  27204569 accaaagacactcaatcataaaattatctcctttgattccttatgtttatctctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgc 27204668  T
Q  535 a 535  Q
    |    
T  27204669 a 27204669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 533
Target Start/End: Original strand, 36146679 - 36146759
Alignment:
Q  454 taaagttctctccattggtttcctatgtttttctctcttgaagctca-cccaaaacatgaagaatgaagccttatataatg 533  Q
    |||||||  |||| ||| ||||| | ||||||||||||||||||||  ||||||| |||||||||||||||||| ||||||    
T  36146679 taaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 2580523 - 2580635
Alignment:
Q  297 tttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-attttaatcct---aataatgaaatctcactaac 392  Q
    |||||||||||||||||  | |||||||| | | |||||||||||||||||||||  ||||||||  |||| |||||   |||  ||||||||||||| |    
T  2580523 tttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacc 2580621  T
Q  393 caaggtgtttacaa 406  Q
    ||||||||||||||    
T  2580622 caaggtgtttacaa 2580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 554
Target Start/End: Complemental strand, 18396187 - 18396112
Alignment:
Q  480 gtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatataatgcacatgacctgagaaaatcgt 554  Q
    |||| ||||||||||||||| ||  |||||||||||||||||| ||||||||||||||| |  | |||||||||||    
T  18396187 gtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagttccgagaaaatcgt 18396112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 8140721 - 8140647
Alignment:
Q  228 cactatgacaaagagtgatacaaagaggttacaagaaattagcttaaaagctcatagaacaaaccttaatttcta 302  Q
    |||||||| || ||||||||||||||| ||||||||||||  |||| || |||| |||||||| | |||||||||    
T  8140721 cactatgaaaatgagtgatacaaagagattacaagaaattgacttacaatctcacagaacaaatcctaatttcta 8140647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 24526138 - 24526222
Alignment:
Q  438 caaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagc 522  Q
    ||||||| ||||| | ||||||| ||||| ||| |||||   |||||||||||||||||||| | |||||  |||||||||||||    
T  24526138 caaagaccctcaaccctaaagttatctcctttgatttccctagtttttctctcttgaagctctcgcaaaaattgaagaatgaagc 24526222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 3047344 - 3047455
Alignment:
Q  255 gttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacat 352  Q
    |||||||||||| | ||||||||||  || |||||||  | |||||||||||||||||| |||| |||||||| | | |||||||| ||||| ||||||     
T  3047344 gttacaagaaatcaacttaaaagctcacaaagaacaagacctaatttctacccattttt-aagtcacccacactc-tcaatgaatcttaagataaaacac 3047441  T
Q  353 taaaggaagatttt 366  Q
     |||||||| ||||    
T  3047442 aaaaggaagctttt 3047455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 161 - 441
Target Start/End: Original strand, 2630227 - 2630511
Alignment:
Q  161 catcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttaca 260  Q
    |||||||||||||  || |||||||||||| ||||||| || ||| |||||||| | | |||  |||||||||||  || |||||||||||  |||||||    
T  2630227 catcaatattgttaacctagttcggtccaatatgacctgctttgagggagatagcagctcttcaatccactatgatgaa-agtgatacaaaagggttaca 2630325  T
Q  261 agaaattagcttaaaagctcata--gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaagg 358  Q
    | |||||||||||||| | || |  ||||||| | |||||| ||  |||||||||||| |||| ||| || || ||||||||||||||||||| ||||||    
T  2630326 ataaattagcttaaaaacacacaaagaacaaaacctaatttttatacatttttcaagtcaccctcactcacaa-tgaatcctaagagaaaacactaaagg 2630424  T
Q  359 aag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaa 441  Q
    |||  |||| |||||   |||  |||||| |||||| | ||| ||||| ||| |||||| ||||| || ||||||| | ||||||||    
T  2630425 aagctttttgatcctttcaatggtgaaatttcactatcaaagatgtttgcaaatgtttcttaaccaaataaataaactctcaccaaa 2630511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 71 - 557
Target Start/End: Original strand, 5611052 - 5611530
Alignment:
Q  71 aacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatataagaatgaatggatgggagaaaacaacacatcaatatt 170  Q
    |||||| ||||||| | ||| | |||||||||||||| ||  ||||||||||||||||| ||||||| ||| |||    ||||||||||||| |||||||    
T  5611052 aacaaacaaacctagatctaagagtgaaacaacaccataagaatattcaaagcaacaaagataagaaagaaggga----agaaaacaacacaccaatatt 5611147  T
Q  171 gttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaattagc 270  Q
    ||||  | | ||||| ||||||| || |||| ||  |||   |  |||  | ||||||||||||| ||| | |||||||||||| ||| || ||||||||    
T  5611148 gtttatcaaattcggcccaaaataacatactatggaggaatgaccaactttctgatccactatgataaa-actgatacaaagagattaaaaaaaattagc 5611246  T
Q  271 ttaaaag--ctcatagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaaaggaag-atttta 367  Q
    |||||||  | || ||||||||   | ||||||| |||||||| |||| |   |||| ||||||||| ||||||||||||||| ||||| |||  ||||     
T  5611247 ttaaaagttcacaaagaacaaaatcttatttctatccattttt-aagtcataaacactcataaatgattcctaagagaaaacactaaagcaagctttttg 5611345  T
Q  368 atcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaagaaataaattttcaccaaagacactcaaacttaaagttctct 464  Q
    ||| |   ||||||||||||||| |||| ||||||||||| | ||||||| || | || ||||| |   |        ||||||||   |||||||| ||    
T  5611346 atcttttcaataatgaaatctcattaactaaggtgtttaccaatgtttcccaatccaaaaaatatacgct--------acactcaactctaaagttccct 5611437  T
Q  465 ccattggtttcctatgtttttctctcttgaagctcacccaaaacatgaagaatgaagccttatataatgcacatgacctgagaaaatcgtgcc 557  Q
    ||||| |||||  | |||| |||||||||||||||   ||||||||||||||||||| |||| || ||| ||| |||  |||||||| |||||    
T  5611438 ccattagtttcacaagtttctctctcttgaagctctttcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaattgtgcc 5611530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 33030962 - 33030854
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    |||||| ||| | ||||||||||||||||||||||||||  || |||||||| | ||||||||||||||||||||||| || ||||| | | ||||||||    
T  33030962 agtgatgcaatggggttacaagaaattagcttaaaagctcacaaagaacaaaacataatttctacccatttttcaagtcactcacactc-tcaatgaatc 33030864  T
Q  339 ctaagagaaa 348  Q
    ||||||||||    
T  33030863 ctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 6741927 - 6742038
Alignment:
Q  241 agtgatacaaagaggttacaagaaattagctt--aaaagctcatagaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatc 338  Q
    ||||||||||||| ||||||||||||||||||  |||  | || |||||||| | |||||||||| |||||||||||| |||||||| | | ||||||||    
T  6741927 agtgatacaaagaagttacaagaaattagcttgcaaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactc-tcaatgaatc 6742025  T
Q  339 ctaagagaaaaca 351  Q
    |||||| ||||||    
T  6742026 ctaagaaaaaaca 6742038  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 424
Target Start/End: Original strand, 28832251 - 28832519
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||| ||||||||||| |||||||| ||||  ||||| || | ||||   |||||||| ||  || |||| ||||| ||| |    
T  28832251 aacacaccaagattgttgacccggttcggtccaatatgacctaatctgggggagagagcagccctccaatccactaagatgaa-agtgttacaatgag-t 28832348  T
Q  257 tacaagaaattagcttaaaagctcata-gaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaacattaa 355  Q
    ||||||||||||||||| |||  || | ||||||    ||||||||||||||||||||  | |||||||| | | |||||||||||||||||||||  ||    
T  28832349 tacaagaaattagcttataagtacaaaagaacaagttctaatttctacccatttttcatatcacccacactc-tcaatgaatcctaagagaaaacacaaa 28832447  T
Q  356 aggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||||  |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  28832448 aggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 28832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 403
Target Start/End: Original strand, 30899939 - 30900108
Alignment:
Q  238 aagagtgatacaaagaggttacaagaaattagcttaaaagct--catagaacaaaccttaatttctacccatttttcaagttacccacacacataaatga 335  Q
    ||||||||||||||||||||||||||||||||| || |||||  || |||||||||  || |||||||  ||||||||||  || || || || ||| ||    
T  30899939 aagagtgatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttctactgatttttcaagccactcaaacccacaaa-ga 30900037  T
Q  336 atcctaagagaaaacattaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgttta 403  Q
    ||||| |||||||||| ||||| |||  |||| |||||     |||||||||||||||| ||||||||||||    
T  30900038 atcct-agagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggtgttta 30900108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 11916901 - 11916807
Alignment:
Q  332 atgaatcctaagagaaaacattaaaggaagattttaatcct---aataatgaaatctcactaaccaaggtgtttacaactgtttcctaacctaaga 424  Q
    ||||| ||||||||||||||  |||||||| |||| |||||   |||  ||||||||||||| ||||||||||||||| ||||||| |||| ||||    
T  11916901 atgaaccctaagagaaaacacaaaaggaagtttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa-tgtttcccaacccaaga 11916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 3651619 - 3651686
Alignment:
Q  283 agaacaaaccttaatttctacccatttttcaagttacccacacacataaatgaatcctaagagaaaaca 351  Q
    |||||||||| ||||||||||||||||||||||| || || ||  || |||||||||||||| ||||||    
T  3651619 agaacaaaccctaatttctacccatttttcaagtcactcaaacctat-aatgaatcctaagataaaaca 3651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 34842677 - 34842755
Alignment:
Q  240 gagtgatacaaagaggttacaagaaattagcttaaaagctca--tagaacaaaccttaatttctacccatttttcaagt 316  Q
    ||||||||||||||||||||||||  ||| |||| |||||||   |||||| | | |||||||||| ||||||||||||    
T  34842677 gagtgatacaaagaggttacaagatgttatcttacaagctcaccaagaacatatcctaatttctactcatttttcaagt 34842755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 33831763 - 33831692
Alignment:
Q  244 gatacaaagaggttacaagaaattagcttaa--aagct--catagaacaaaccttaatttctacccatttttc 312  Q
    ||||||||  |||||||||||||||||||||  |||||  || |||||||||| |||||||||||||||||||    
T  33831763 gatacaaatgggttacaagaaattagcttaaacaagctcacaaagaacaaacc-taatttctacccatttttc 33831692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 534
Target Start/End: Complemental strand, 5007482 - 5007381
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatataat 532  Q
    |||||||||| |||||| | |||||||  |||| ||| ||| ||| ||||||||||||| |||| | |||  ||| ||||| |||||||||||| |||||    
T  5007482 tcaccaaagatactcaaccctaaagttacctcctttgattttctaagtttttctctcttaaagccctaccttaaaaatgaacaatgaagccttaaataat 5007383  T
Q  533 gc 534  Q
    ||    
T  5007382 gc 5007381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 276
Target Start/End: Complemental strand, 16181 - 15975
Alignment:
Q  67 caacaacaaagaaacctacacctatgtgtgaaacaacaccacaaatatattcaaagcaacaaatat-aagaatgaatggatgggagaaaacaacacatca 165  Q
    ||||||||||   ||||| | ||| |||||||||||||||||||| ||||||||||||||||| || ||||  ||| ||| |    ||||||||||| ||    
T  16181 caacaacaaatttacctagatctaagtgtgaaacaacaccacaaacatattcaaagcaacaaagataaagagagaaaggaag---aaaaacaacacacca 16085  T
Q  166 atattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggttacaagaaa 265  Q
    ||||| ||| |||||||||||||||||| | ||||| ||  | ||| |  ||| || | |||||||||||  |||||| ||||||||| |||||||||||    
T  16084 atattatttacccagttcggtccaaaataatctactatggagaagagaacaacactctaatccactatga-taagagttatacaaagatgttacaagaaa 15986  T
Q  266 ttagcttaaaa 276  Q
    |||||||||||    
T  15985 ttagcttaaaa 15975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 406
Target Start/End: Original strand, 5675 - 5930
Alignment:
Q  157 aacacatcaatattgttttcccagttcggtccaaaatgacctactctgatggagatagtaaccctttgatccactatgacaaagagtgatacaaagaggt 256  Q
    |||||| ||| ||||||  ||||||||||||||| |||||||| ||||  ||||| || | |||||  |||||||||||  || |||| ||||||   |     
T  5675 aacacaccaagattgttgacccagttcggtccaatatgacctaatctgggggagagagcagcccttcaatccactatgatgaa-agtgttacaaaagaga 5773  T
Q  257 tacaagaaattagcttaaaagctca---tagaacaaaccttaatttctacccatttttcaagttacccacacacataa--atgaatcctaagagaaaaca 351  Q
    ||||||||||||||||| ||||| |    |||||||  |||||||||||| ||||||    || |||||||| |  ||  ||||||||||||||||||||    
T  5774 tacaagaaattagcttataagcttacacaagaacaagacttaatttctactcatttt--gtgtcacccacactctcaatgatgaatcctaagagaaaaca 5871  T
Q  352 ttaaaggaag-attttaatcct---aataatgaaatctcactaaccaaggtgtttacaa 406  Q
      ||||||||  |||| |||||   |||  ||||||||||||| |||||||||||||||    
T  5872 caaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaa 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 532
Target Start/End: Original strand, 27694 - 27793
Alignment:
Q  434 tcaccaaagacactcaaacttaaagttctctccattggtttcctatgtttttctctcttgaagc-tcacccaaaacatgaagaatgaagccttatataat 532  Q
    |||| |||||| ||||  ||| |||||  |||| ||| ||||| | ||||||| |||||||||| ||||  ||||||||||||||||| |||||||||||    
T  27694 tcactaaagactctcattcttgaagttacctcctttgatttcccaagtttttcgctcttgaagcctcacaaaaaacatgaagaatgaatccttatataat 27793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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