View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_20 (Length: 265)
Name: NF9881_low_20
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 53953267 - 53953013
Alignment:
| Q |
1 |
ccaaattttccgaaatcagattcagataaacgaatcttccttttctgcttagcatttcgaatgctgaattcaatgctagtgcagagttacttcaatccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53953267 |
ccaaattttccgaaatcagattcagataaacgaagcttccttttctgcttagcatttcgaatgctaaattcaatgctagtgcagagttacttcaatccag |
53953168 |
T |
|
| Q |
101 |
atgaacattggcaaggtcctgaagttgcacatcgaatcgcattcggatacggtcacttaacatgggaatggaaacagggtattcgaagctatcttcatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53953167 |
atgaacattggcaaggtcctgaagttgcacatcgaatcgcattcggatacggtcacttaacatgggaatggaaacagggtattcgaagctatcttcatcc |
53953068 |
T |
|
| Q |
201 |
gttcctctttgttcctctttacaagttcctcgcattaatccatcttgatacccct |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53953067 |
gttcctctttgttcctctttacaagttcctcgcattaatccatcttgatacccct |
53953013 |
T |
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