View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_23 (Length: 215)
Name: NF9881_low_23
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 53953447 - 53953267
Alignment:
| Q |
23 |
ccgacgccgtacgccgccataaccttccatctcctccctccgcctcacatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctcat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53953447 |
ccgacgccgtacgccgccataaccttccatctcctccctccgcctcacatcaatctatcacaggccgccggcgattcacatccctccttctcaatctcat |
53953348 |
T |
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| Q |
123 |
atgatttcaacatctaaattgtaacaatgagaaaaagacgcgacaattacaaagatgcaccacaaaataaactccaaactc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53953347 |
atgatttcaacatctaaattgtaacaatgagaaaaagacgcgacaattacaaagatgcaccacaaaataaactccaaactc |
53953267 |
T |
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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 5723426 - 5723481
Alignment:
| Q |
69 |
acatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctcatat |
124 |
Q |
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| T |
5723426 |
acatcaatctgtcacaggccgccggagattcacatccatccttctcaatctcatat |
5723481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 33294474 - 33294419
Alignment:
| Q |
69 |
acatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctcatat |
124 |
Q |
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| T |
33294474 |
acatcaatctgtcacaggccgccggagattcacatccatctttctcaatctcatat |
33294419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 32838307 - 32838362
Alignment:
| Q |
69 |
acatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctcatat |
124 |
Q |
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| T |
32838307 |
acatcaatctgtcacagggcgtcggagattcacatccatccttctcaatctcatat |
32838362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 5913255 - 5913204
Alignment:
| Q |
69 |
acatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctc |
120 |
Q |
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|||||||| | ||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
5913255 |
acatcaatttatcacaggccgccggctattcacatccctccttctcattctc |
5913204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 48577701 - 48577650
Alignment:
| Q |
69 |
acatcaatctgtcacaggccgccggcgattcacatcccttcttctcaatctc |
120 |
Q |
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|||||||| | ||||||||||||||| |||||||||||| |||||||||||| |
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| T |
48577701 |
acatcaatttatcacaggccgccggctattcacatccctccttctcaatctc |
48577650 |
T |
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