View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9881_low_6 (Length: 579)

Name: NF9881_low_6
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9881_low_6
NF9881_low_6
[»] chr8 (3 HSPs)
chr8 (1-561)||(25131544-25132111)
chr8 (124-195)||(39531150-39531221)
chr8 (163-197)||(36406640-36406674)
[»] chr1 (6 HSPs)
chr1 (1-97)||(13569932-13570028)
chr1 (1-157)||(10802355-10802516)
chr1 (398-480)||(25598814-25598896)
chr1 (136-197)||(44305354-44305415)
chr1 (138-197)||(37154104-37154163)
chr1 (145-193)||(6331620-6331668)
[»] chr3 (8 HSPs)
chr3 (392-539)||(32657770-32657917)
chr3 (124-205)||(31985751-31985832)
chr3 (392-454)||(32658130-32658192)
chr3 (409-485)||(15786041-15786117)
chr3 (151-195)||(43585081-43585125)
chr3 (163-197)||(44625646-44625680)
chr3 (124-194)||(53707111-53707181)
chr3 (168-197)||(7500883-7500912)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-97)||(7731-7829)
[»] chr4 (6 HSPs)
chr4 (443-544)||(9540919-9541020)
chr4 (136-194)||(1585655-1585713)
chr4 (163-197)||(10715597-10715631)
chr4 (163-197)||(10929367-10929401)
chr4 (168-197)||(2017581-2017610)
chr4 (163-195)||(4552130-4552162)
[»] chr5 (5 HSPs)
chr5 (409-485)||(8720708-8720784)
chr5 (163-197)||(30248907-30248941)
chr5 (163-197)||(34443908-34443942)
chr5 (163-197)||(34846297-34846331)
chr5 (163-195)||(2476348-2476380)
[»] chr7 (1 HSPs)
chr7 (163-197)||(35300579-35300613)
[»] chr6 (2 HSPs)
chr6 (163-197)||(10397931-10397965)
chr6 (163-197)||(23663898-23663932)
[»] chr2 (1 HSPs)
chr2 (163-197)||(13203710-13203744)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 25131544 - 25132111
Alignment:
1 gagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc--- 97  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       
25131544 gagtcactgagagagggagagtcactataagttagagaaggagaagactgaaaaataga-catttttacacgcctgaacatttgcctcaattttgcccgg 25131642  T
98 tcnnnnnnnnnnnaagtaaagaatatggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtg 197  Q
    |            ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
25131643 tttttttttttttaagtaaagaatatggctattgggttgggcttccaacattgaaagcagaagcagagcctgggcactagcccaggctagctggggggtg 25131742  T
198 taatcgcccatgttcatggctagtgcacgtgggccagcagagtgggtgggatgcaggaggcagaatggcctgaaaagaggtcaaaattgattttgctgaa 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
25131743 taatcgcccatgttcatggctagtgcacgtgggccagcagagtgggtgggatgcagg---cagaatggcctgaaaagaggtcaaaattgattttgctgaa 25131839  T
298 gaaggatatcaaggaaaggaggtttaggtagtatagaataagttgcgtagtgttatacctaaggaagtgtctgtaaaataataatgtatttgaggaaaat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||    
25131840 gaaggatatcaaggaaaggaggtttaggtagtatagaataagttgcgtaatgttatacctaaggaagtgtcagtaaaataatcatgtatttgaggaaaat 25131939  T
398 aatgtaacggtgggacctggtcattaggcctgtcgggaacaatgagtcttgtatgttggaaatgccgaggcttgggaaacctgagtgtggt--------t 489  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |    
25131940 aatgtaacggtgggacctggtcattaggcttgttgggaacaatgagtcttgtatgttggaaatgctgaggcttgggaaacctgagtgtggttcctattat 25132039  T
490 cctatactaaaattcatagtccaacattataagctggatattctatttttaagtgggccccttgtccacatt 561  Q
    ||||||||||||||||||||||   |||||||| ||||| |||||||||||||||||  |||||||||||||    
25132040 cctatactaaaattcatagtccggtattataagttggatgttctatttttaagtgggttccttgtccacatt 25132111  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 39531221 - 39531150
Alignment:
124 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctgggggg 195  Q
    |||||||||| |||||||  | || | |||| ||||| ||||| ||||||||||||||||||||||||||||    
39531221 ggctattgggttgggcttttagcaaacaaagtagaagtagagcctgggcactagcccaggctagctgggggg 39531150  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 36406640 - 36406674
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
36406640 gagcctgggcactagcccaggctagctggggggtg 36406674  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13569932 - 13570028
Alignment:
1 gagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc 97  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13569932 gagtcactaagagagggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc 13570028  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 10802355 - 10802516
Alignment:
1 gagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacgcctgaacatttgcctcaattttgcc--- 97  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
10802355 gagtcactaagagagggagagtcacgataagttagagaaggagaagactgaaaaatagaacatttttacacg-ctgaacatttgcctcaattttgcccat 10802453  T
98 ---tcnnnnnnnnnnnaagtaaagaatatggctattgggctgggcttccaacatagaaagcag 157  Q
       |            |||||||||||||||||||||||||||||||||||||||||||||||    
10802454 ttttttatttttttttaagtaaagaatatggctattgggctgggcttccaacatagaaagcag 10802516  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 480
Target Start/End: Complemental strand, 25598896 - 25598814
Alignment:
398 aatgtaacggtgggacctggtcattaggcctgtcgggaacaatgagtcttgtatgttggaaatgccgaggcttgggaaacctg 480  Q
    ||||||||||||||||||| |||  |||||||||| || ||||||||  | ||  |||||| ||||||||| |||||||||||    
25598896 aatgtaacggtgggacctgctcaacaggcctgtcgagaccaatgagtactatagcttggaattgccgaggcctgggaaacctg 25598814  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 44305415 - 44305354
Alignment:
136 gggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtg 197  Q
    |||||||| ||| ||||||  | ||| |||| ||||||||||||||||||||||||||||||    
44305415 gggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtg 44305354  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 37154104 - 37154163
Alignment:
138 gcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtg 197  Q
    |||||| ||| ||||||  | ||| |||| ||||||||||||||||||||||||||||||    
37154104 gcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtg 37154163  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 6331668 - 6331620
Alignment:
145 acatagaaagcagaagcagagcatgggcactagcccaggctagctgggg 193  Q
    ||||||||||  | ||| |||| ||||||||||||||||||||||||||    
6331668 acatagaaagttggagccgagcctgggcactagcccaggctagctgggg 6331620  T

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Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 392 - 539
Target Start/End: Original strand, 32657770 - 32657917
Alignment:
392 gaaaataatgtaacggtgggacctggtcattaggcctgtcgggaacaatgagtcttgtatgttggaaatgccgaggcttgggaaacctgagtgtggttcc 491  Q
    ||||||||||||||||  ||||||  | |  ||||||| || ||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
32657770 gaaaataatgtaacggcaggacctaataaccaggcctgacgagaaaaatgagtcttgtattttggaactgccgaggcttgggaaacctgagtgtagttcc 32657869  T
492 tatactaaaattcatagtccaacattataagctggatattctattttt 539  Q
    || |||||||||| |||||| | ||||||||| |||| | ||||||||    
32657870 taaactaaaattcctagtccgatattataagccggatgtcctattttt 32657917  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 31985832 - 31985751
Alignment:
124 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggggtgtaatcgcc 205  Q
    |||||||||| |||||||  | || | |||| |||||||||||  |||||| |||||||||||||||||||||||| |||||    
31985832 ggctattgggttgggcttttaccaaacaaagtagaagcagagcccgggcaccagcccaggctagctggggggtgtagtcgcc 31985751  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 32658192 - 32658130
Alignment:
392 gaaaataatgtaacggtgggacctggtcattaggcctgtcgggaacaatgagtcttgtatgtt 454  Q
    |||||||||||||||| |||||||||| |  ||||||| || |||||| ||||||||||||||    
32658192 gaaaataatgtaacggcgggacctggtaaccaggcctgccgagaacaacgagtcttgtatgtt 32658130  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 485
Target Start/End: Original strand, 15786041 - 15786117
Alignment:
409 gggacctggtcattaggcctgtcgggaacaatgagtcttgtatgttggaaatgccgaggcttgggaaacctgagtgt 485  Q
    ||||||||||||  ||||||| ||||| |||||||| |||||   ||||| ||||||||| ||||||||||| ||||    
15786041 gggacctggtcaccaggcctgccgggatcaatgagttttgtagcatggaattgccgaggcctgggaaacctgcgtgt 15786117  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 43585125 - 43585081
Alignment:
151 aaagcagaagcagagcatgggcactagcccaggctagctgggggg 195  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||    
43585125 aaagcagaagctgagcccgggcactagcccaggctagctgggggg 43585081  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 44625680 - 44625646
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
44625680 gagcctgggcactagcccaggctagctggggggtg 44625646  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 53707181 - 53707111
Alignment:
124 ggctattgggctgggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggg 194  Q
    |||||||||| |||||||  | || | |||| |||||||||||  ||||| ||||||||||||||||||||    
53707181 ggctattgggttgggcttttaccaaacaaagtagaagcagagcccgggcattagcccaggctagctggggg 53707111  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 7500912 - 7500883
Alignment:
168 tgggcactagcccaggctagctggggggtg 197  Q
    ||||||||||||||||||||||||||||||    
7500912 tgggcactagcccaggctagctggggggtg 7500883  T

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Target: scaffold0170 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7829 - 7731
Alignment:
1 gagtcactgagagtgggagagtcacgataagttagagaaggagaagactgaaaaatagaacattttta--cacgcctgaacatttgcctcaattttgcc 97  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||  | |||||||||||||||||||||| ||||    
7829 gagtcactgagagagggagagtcacgttaagttagagaaggagaagaccgaaaaatagaaaatttgtatgcgcgcctgaacatttgcctcaattctgcc 7731  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 443 - 544
Target Start/End: Complemental strand, 9541020 - 9540919
Alignment:
443 gtcttgtatgttggaaatgccgaggcttgggaaacctgagtgtggttcctatactaaaattcatagtccaacattataagctggatattctatttttaag 542  Q
    |||||||||||||||| ||| ||||  || ||||||| ||||| ||| ||  ||||||||| ||||||||  |||||||  ||||| |||| ||||||||    
9541020 gtcttgtatgttggaactgctgaggtatgagaaacctaagtgttgtttctcaactaaaatttatagtccagtattataatttggatgttctgtttttaag 9540921  T
543 tg 544  Q
    ||    
9540920 tg 9540919  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 1585713 - 1585655
Alignment:
136 gggcttccaacatagaaagcagaagcagagcatgggcactagcccaggctagctggggg 194  Q
    |||||| | ||| ||||||  ||||| |||| |||||||||||||||||||||||||||    
1585713 gggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagctggggg 1585655  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 10715631 - 10715597
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
10715631 gagcctgggcactagcccaggctagctggggggtg 10715597  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 10929401 - 10929367
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
10929401 gagcctgggcactagcccaggctagctggggggtg 10929367  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 2017581 - 2017610
Alignment:
168 tgggcactagcccaggctagctggggggtg 197  Q
    ||||||||||||||||||||||||||||||    
2017581 tgggcactagcccaggctagctggggggtg 2017610  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4552162 - 4552130
Alignment:
163 gagcatgggcactagcccaggctagctgggggg 195  Q
    |||| ||||||||||||||||||||||||||||    
4552162 gagcctgggcactagcccaggctagctgggggg 4552130  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 485
Target Start/End: Original strand, 8720708 - 8720784
Alignment:
409 gggacctggtcattaggcctgtcgggaacaatgagtcttgtatgttggaaatgccgaggcttgggaaacctgagtgt 485  Q
    ||||||||||||  ||||||| ||||| |||||||| |||||   ||||| ||||||||| ||||||||||| ||||    
8720708 gggacctggtcaccaggcctgccgggaccaatgagttttgtagcatggaattgccgaggcctgggaaacctgcgtgt 8720784  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 30248941 - 30248907
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
30248941 gagcctgggcactagcccaggctagctggggggtg 30248907  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 34443942 - 34443908
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
34443942 gagcctgggcactagcccaggctagctggggggtg 34443908  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 34846331 - 34846297
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
34846331 gagcctgggcactagcccaggctagctggggggtg 34846297  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 2476380 - 2476348
Alignment:
163 gagcatgggcactagcccaggctagctgggggg 195  Q
    |||| ||||||||||||||||||||||||||||    
2476380 gagcctgggcactagcccaggctagctgggggg 2476348  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 35300579 - 35300613
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
35300579 gagcctgggcactagcccaggctagctggggggtg 35300613  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 10397931 - 10397965
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
10397931 gagcctgggcactagcccaggctagctggggggtg 10397965  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 23663898 - 23663932
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
23663898 gagcctgggcactagcccaggctagctggggggtg 23663932  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 13203744 - 13203710
Alignment:
163 gagcatgggcactagcccaggctagctggggggtg 197  Q
    |||| ||||||||||||||||||||||||||||||    
13203744 gagcctgggcactagcccaggctagctggggggtg 13203710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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