View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_low_9 (Length: 479)
Name: NF9881_low_9
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 34399254 - 34399718
Alignment:
| Q |
1 |
atacactgggactgccctcttgctctaatggaccaatagatggtgggggtaccctacagttgaactataaggagagaaaccttaataagaaattgatgaa |
100 |
Q |
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| T |
34399254 |
atacactgggactgccctcttgctctaatggaccaatagatggtgggggtaccctacagttgaactataaggagagaaaccttaataagaaattgatgaa |
34399353 |
T |
|
| Q |
101 |
caggtatttttcttttggagcacaagggcaggctttggaagatgcaaacacttgctcaatgtcaaatcacagttctaagtgtttcagttatttagttgca |
200 |
Q |
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| T |
34399354 |
caggtatttttcttttggagcacaagggcaggctttggaagatgcaaacacttgctcaatgtcaaatcacagttctaagtgtttcagttatttagttgca |
34399453 |
T |
|
| Q |
201 |
taaatgttactacgtgcatgtatggtatcatggtggattgaacaaattcatggtaactgtgattttgttgaaactacaaatggtagctttttgtgaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34399454 |
taaatgttactacgtgcatgtatggtatcatggtggattgaacaaattcatggtaactgtgattttattgaaactacaaatggtagctttttgtgaaatt |
34399553 |
T |
|
| Q |
301 |
taccgcgatactaaacaaacattatg--tatatatatgagcttgatattttgtgaattgtgatatagaatctaataagccaaggctacaattcaaagcac |
398 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34399554 |
taccgccatactaaacaaacattatgtatatatatatgagcttgatattttgtgaattgtgatatagaaactaataagccaaggctacaattcaaagcac |
34399653 |
T |
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| Q |
399 |
tttatcaatgttttttattttataagcgcgttatcaatgctatgattttttataggaacaaaatg |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34399654 |
tttatcaatgttttttattttataagcgcgttatcaatgctgtgattttttataggaacaaaatg |
34399718 |
T |
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