View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_1 (Length: 649)
Name: NF9882_1
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_1 |
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Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 7 - 622
Target Start/End: Original strand, 12736565 - 12737179
Alignment:
| Q |
7 |
tcgaagaatatgtaatacgatttcaaccaccaatacatttgaaatttaaccttttct-gcaagcgcctcaagctgtatcaatgatagatattcattcatg |
105 |
Q |
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| T |
12736565 |
tcgaacaaaatgtaatacgatttcaaccaccaatacatttggaatttaaccttttcttgcaagcgcctcaagctgtatcaatgatagatattcattcatg |
12736664 |
T |
|
| Q |
106 |
gagagtcggatgtcgaagaatatatgctatgttttaatttaccaaatactcaataacgagggaaaactcaactcataaaacacaactaaggtctcatcga |
205 |
Q |
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| T |
12736665 |
gagagtcgcagct--aacaatatatgctatgttttaatttaccaaatactcaataacgagggaaaactcaactcataaaacacaactaaggtctcatcga |
12736762 |
T |
|
| Q |
206 |
ttctatagtgacaattgtattgtgctctagcatgaattggagaacctattcaaaaatgtgatagaatgttcaatggacattatccaagcaattattaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12736763 |
ttctatagtgacaattgtattgtgctctagcatgaattggagaacctattcaaaaatgtgatagaatgttcaatggacattatccaagcaattattaaag |
12736862 |
T |
|
| Q |
306 |
agaacacatgtttaaaatgtgatagaatcaatgtacattacattaatcaaagaatttttgtttccatcaaacatcaagtagattgcacagatggcaacaa |
405 |
Q |
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| T |
12736863 |
agaacacatgtttaaaatgtgatagaatcaatgtacattacattaatcaaagaatttttgtttccatcaaacatcaagtagattgcacagatggcaacaa |
12736962 |
T |
|
| Q |
406 |
cttgtgggatggtctttttcctataactgaggtttggcaatgcatataagggaaattgatgtgtatgtttatggaaacttaatagccaagaccataactt |
505 |
Q |
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| T |
12736963 |
cttgtgggatggtctttttcctaaaacttagatttggcaatggatataaggaaaattgatgtgtctgtttatggaaacttaatagccaagaccataactt |
12737062 |
T |
|
| Q |
506 |
atcataatttgagcacatgaaaaatagttccactttgcccgacaagcccttttcctgtacaaactcccttcagtgggggcattatcttaagagtgggtaa |
605 |
Q |
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| T |
12737063 |
atcataatttgagcacatgaaaaatagttccactttgcccgacaagcccttttcctgtacaaactcccttcagtgggggcattatcttaagagtgggtaa |
12737162 |
T |
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| Q |
606 |
ggcttggtgttggtggt |
622 |
Q |
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| T |
12737163 |
ggcttggtgttggtggt |
12737179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 23659809 - 23659867
Alignment:
| Q |
22 |
tacgatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaagctg |
80 |
Q |
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||||||||||||||| ||||| |||| | ||||||||||||| |||| | ||||||||| |
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| T |
23659809 |
tacgatttcaaccactaatacgtttggagtttaaccttttctccaagagtctcaagctg |
23659867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 9759977 - 9759936
Alignment:
| Q |
16 |
atgtaatacgatttcaaccaccaatacatttgaaatttaacc |
57 |
Q |
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| T |
9759977 |
atgtaattcgctttcaaccaccaatacatttgaagtttaacc |
9759936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 31635917 - 31635856
Alignment:
| Q |
16 |
atgtaatacgatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaag |
77 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| ||||| |||||| ||||| | |||||| |
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| T |
31635917 |
atgtagtacgatttcaaccaccaatacgtttgaagtttaatcttttcagcaagagtctcaag |
31635856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 13026320 - 13026375
Alignment:
| Q |
25 |
gatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaagctg |
80 |
Q |
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| T |
13026320 |
gatttcagccaccaatacgtttggagtttaaccttttctgcaagagtctcaagctg |
13026375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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