View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_12 (Length: 334)
Name: NF9882_12
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_12 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 3584248 - 3583923
Alignment:
| Q |
1 |
tccgttttcatgtttgggatgtactatgtatacaggttcttaatgaagccaatcttacgaatgccattctttctagaacagtcctcacacggagtgacct |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3584248 |
tccggtttcatgtttgggatgtactatgtatacaggttcttaatgaagccaatcttacgaatgccattctttctagaacagtcctcacgcggagtgacct |
3584149 |
T |
|
| Q |
101 |
tggaggcgccatcattgaaggcgctgattttagtgatgccgtgttggaccttccccaaaaactggtacgaccactgattgcttcaaacactaatcaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584148 |
tggaggcgccatcattgaaggcgctgattttagtgatgccgtgttggaccttccccaaaaactggtacgaccactgattgcttcaaacactaatcaaatc |
3584049 |
T |
|
| Q |
201 |
ttagtattcgagcttccacatgatagggtcatggtctgattgcgtag----aatgtgtttcaatgtggtcaaaatgctttcttggcgtagaatttattga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584048 |
ttagtattcgagcttccacatgatagggtcatggtcagattgcgtagaattaatgtgtttcaatgtggtcaaaatgctttcttggcgtagaatttattga |
3583949 |
T |
|
| Q |
297 |
gcttatgactgagaattacatatatt |
322 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3583948 |
gcttatgactgagaattacatatatt |
3583923 |
T |
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