View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_13 (Length: 327)
Name: NF9882_13
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 36027068 - 36027376
Alignment:
| Q |
11 |
cagagacccgtgaactgtgaaggactgatatgcatgtacgtatacatacatacatatatgcttgtgtctaattcgacttaactctctctcagtcattcac |
110 |
Q |
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| T |
36027068 |
cagagacccgtgaactatgaaggactgatatgcatgtacgtatac----atacatatatgcttgtgtctaattggacttaactttctctcagtcattcac |
36027163 |
T |
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| Q |
111 |
tgatatatagatactatttctgattgagacaattaatactttctcctaggctcctccattggtcgtttatttccaatatccctccccatgcaaatttcat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36027164 |
tgatatatagatactatttctgattgagacaattaatactttctcctaggctcctccattggtcgtttatttccaatatcccttcccatgcaaatttcat |
36027263 |
T |
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| Q |
211 |
tatgacaactatcatggattggatgcnnnnnnnnnnnngtccttcacttttttggtattggttagcttagtttatgtggactttgtattgtaccacattc |
310 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027264 |
tatgacaactatcatggattggatgc----atatatatgtccttcacttttttggtattggttagcttagtttatgtggactttgtattgtaccacattc |
36027359 |
T |
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| Q |
311 |
acattaattgagaatga |
327 |
Q |
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||||||||||||||||| |
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| T |
36027360 |
acattaattgagaatga |
36027376 |
T |
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