View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9882_14 (Length: 306)

Name: NF9882_14
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9882_14
NF9882_14
[»] chr4 (8 HSPs)
chr4 (34-306)||(49236589-49236864)
chr4 (160-213)||(20580088-20580141)
chr4 (163-221)||(13404205-13404263)
chr4 (161-221)||(51291126-51291186)
chr4 (161-220)||(48803895-48803953)
chr4 (161-207)||(949900-949946)
chr4 (161-234)||(25138920-25138993)
chr4 (160-212)||(32325285-32325337)
[»] chr7 (3 HSPs)
chr7 (161-220)||(37797976-37798035)
chr7 (162-220)||(8327836-8327894)
chr7 (162-207)||(46794953-46794998)
[»] chr1 (9 HSPs)
chr1 (165-223)||(44957040-44957098)
chr1 (164-219)||(9554085-9554140)
chr1 (161-219)||(48872202-48872260)
chr1 (162-243)||(29014515-29014595)
chr1 (171-220)||(40615971-40616020)
chr1 (168-215)||(5423758-5423805)
chr1 (170-207)||(14579451-14579488)
chr1 (160-217)||(29523567-29523624)
chr1 (166-215)||(40406247-40406295)
[»] chr3 (12 HSPs)
chr3 (167-223)||(53766697-53766753)
chr3 (160-237)||(50941718-50941795)
chr3 (160-234)||(4842635-4842708)
chr3 (160-234)||(4868331-4868404)
chr3 (160-230)||(26886053-26886123)
chr3 (160-217)||(7590728-7590785)
chr3 (161-230)||(22288471-22288540)
chr3 (161-230)||(22288757-22288826)
chr3 (160-230)||(25299034-25299104)
chr3 (162-234)||(39806802-39806872)
chr3 (171-207)||(8825242-8825278)
chr3 (171-207)||(47930131-47930167)
[»] chr2 (2 HSPs)
chr2 (160-215)||(3723400-3723455)
chr2 (161-208)||(36144078-36144125)
[»] chr8 (8 HSPs)
chr8 (161-220)||(35139030-35139089)
chr8 (166-215)||(18181238-18181287)
chr8 (160-221)||(18808772-18808833)
chr8 (165-209)||(36782781-36782825)
chr8 (168-219)||(8785291-8785342)
chr8 (168-222)||(1502675-1502729)
chr8 (161-219)||(28460000-28460058)
chr8 (160-220)||(39644140-39644200)
[»] chr5 (2 HSPs)
chr5 (162-223)||(20041620-20041681)
chr5 (167-207)||(22528751-22528791)
[»] scaffold0009 (1 HSPs)
scaffold0009 (161-220)||(168765-168824)
[»] chr6 (2 HSPs)
chr6 (161-236)||(16109366-16109440)
chr6 (161-219)||(5924769-5924827)
[»] scaffold0036 (1 HSPs)
scaffold0036 (161-219)||(88277-88335)
[»] scaffold0717 (1 HSPs)
scaffold0717 (160-213)||(4975-5028)
[»] scaffold0018 (1 HSPs)
scaffold0018 (160-213)||(67719-67772)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 34 - 306
Target Start/End: Original strand, 49236589 - 49236864
Alignment:
Q  34 attaaaaacctggctagtagtctaaaaa---gagcattttgttaaaattaaaagtaaatgggtattgttaacgagtagcttcggtgcaatttttaggaat 130  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||| |    
T  49236589 attaaaaacctggctagtagtctaaataaacgagcattttgttaaaattaaaagtaaatgggtattgttaacgagtggcttcgatgcactctttagga-t 49236687  T
Q  131 ttttaatgaataaattatt-ttnnnnnnnngtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaa 229  Q
    ||||||||||||||||||| ||         |||| | || |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||  ||||    
T  49236688 ttttaatgaataaattattctttaaaaaaaataaataatttaattttcaatacaataaatacacaaatttttataaaatattatcactttagatgcttaa 49236787  T
Q  230 aaaatatctcaaagcacctgttaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattat 306  Q
    | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49236788 agagtatctcaaagcacccgtcaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattat 49236864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 20580141 - 20580088
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 213  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  20580141 gtaaagacttcaatttccaatataataaatacataaactttcataaaatattac 20580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 13404205 - 13404263
Alignment:
Q  163 aagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 221  Q
    ||||||||||||| |||   |||||||||||||| ||||||||||| ||||||||||||    
T  13404205 aagacttcaatttccaacgtaataaatacataaactttcataaaatcttaccactttag 13404263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 51291126 - 51291186
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 221  Q
    ||||||||||||||| |||| |||||||| || ||| ||||||||||| |||||| |||||    
T  51291126 taaagacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttag 51291186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 48803953 - 48803895
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    ||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||| ||||    
T  48803953 taaagactttaattttcaatgcaataaata-acaaattttcataaaattttaccatttta 48803895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 949946 - 949900
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaa 207  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||    
T  949946 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaa 949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 25138993 - 25138920
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 234  Q
    |||| |||| ||||| |||| ||||||||  | |||||||||||||||  || |||||| ||||||||||||||    
T  25138993 taaaaactttaatttacaatgcaataaatgtacaaattttcataaaatcatatcacttttgatatttaaaaaat 25138920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 32325337 - 32325285
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatatta 212  Q
    |||||||||||| ||| |||||||||| ||||  ||| |||||||||||||||    
T  32325337 gtaaagacttcactttccaatacaatagatacgcaaactttcataaaatatta 32325285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 37797976 - 37798035
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||    
T  37797976 taaagacttcaattttcaatataataaatgcataaattttcataaaatcttaccatttta 37798035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 8327894 - 8327836
Alignment:
Q  162 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    |||||||||||||| |||||||||||||||| ||| ||| ||||||| |||||| ||||    
T  8327894 aaagacttcaatttccaatacaataaatacacaaacttttataaaatcttaccatttta 8327836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 46794998 - 46794953
Alignment:
Q  162 aaagacttcaattttcaatacaataaatacataaattttcataaaa 207  Q
    |||||||||||||||||||  ||||||| |||||||||| ||||||    
T  46794998 aaagacttcaattttcaatgtaataaatgcataaatttttataaaa 46794953  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 44957098 - 44957040
Alignment:
Q  165 gacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 223  Q
    ||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||    
T  44957098 gacttcaattttcaatacaataattgtataaattttcataaaatcttaccactttagat 44957040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 9554085 - 9554140
Alignment:
Q  164 agacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    |||||||||||||||||||| ||||| || ||| |||||||||||||||| |||||    
T  9554085 agacttcaattttcaatacattaaatgcacaaactttcataaaatattactacttt 9554140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 48872202 - 48872260
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    ||||||||||||||| ||||  ||||||| |||||| ||||||||||| ||||||||||    
T  48872202 taaagacttcaatttccaatgtaataaatgcataaactttcataaaatcttaccacttt 48872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 29014595 - 29014515
Alignment:
Q  162 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatctcaaag 243  Q
    ||||| ||||||||||||||||| ||||||||| ||||| ||||||| |||| || |||| |  |||||||||||| |||||    
T  29014595 aaagatttcaattttcaatacaa-aaatacatagattttaataaaatcttactacattaggtgcttaaaaaatatcacaaag 29014515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 40615971 - 40616020
Alignment:
Q  171 aattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| |||||||    
T  40615971 aatttccaatacaataaatacacaaatttttataaaatattatcacttta 40616020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 5423805 - 5423758
Alignment:
Q  168 ttcaattttcaatacaataaatacataaattttcataaaatattacca 215  Q
    ||||||||||||| || ||||||||||| ||||||||||| |||||||    
T  5423805 ttcaattttcaatgcattaaatacataagttttcataaaaaattacca 5423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 14579488 - 14579451
Alignment:
Q  170 caattttcaatacaataaatacataaattttcataaaa 207  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  14579488 caatttttaatacaataaatacataacttttcataaaa 14579451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 29523624 - 29523567
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 217  Q
    ||||| |||||||||| |||| ||||||||||| ||| ||||||| ||| ||||||||    
T  29523624 gtaaaaacttcaatttccaatgcaataaatacacaaactttcatacaatcttaccact 29523567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 40406247 - 40406295
Alignment:
Q  166 acttcaattttcaatacaataaatacataaattttcataaaatattacca 215  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  40406247 acttcaattttcaatacaat-aatacacaaactttcataaaatcttacca 40406295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 53766753 - 53766697
Alignment:
Q  167 cttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 223  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  53766753 cttcaattttcaatgcaataaatacacaaactttcataaaatattaccattttagat 53766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 50941718 - 50941795
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatc 237  Q
    ||||| |||||||||| |||| |||||||| || ||| ||||||||||| |||||||| ||| | |||||||||||||    
T  50941718 gtaaaaacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccactgtaggtctttaaaaaatatc 50941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 4842708 - 4842635
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 234  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| ||||||||||||||  |||||||||    
T  4842708 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgcttaaaaaat 4842635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 4868404 - 4868331
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 234  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| |||||||||||||| ||| ||||||    
T  4868404 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgtttgaaaaat 4868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 26886123 - 26886053
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 230  Q
    ||||| |||||||||||||||||||| ||| || ||| ||||||||||  |||||||||| ||| ||||||    
T  26886123 gtaaaaacttcaattttcaatacaatgaatgcacaaactttcataaaaacttaccactttggatgtttaaa 26886053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7590728 - 7590785
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 217  Q
    ||||| |||| ||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  7590728 gtaaatactttaatttccaatacaataaatacacaaactttcataaaatcttaccact 7590785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 22288540 - 22288471
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 230  Q
    |||||| |||||||||||||| ||||||| || ||| ||||||||||| |||||| ||| |||| |||||    
T  22288540 taaagatttcaattttcaatataataaatgcacaaactttcataaaatcttaccattttggatacttaaa 22288471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 22288826 - 22288757
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 230  Q
    |||||| || |||||| |||| ||||||| || ||||||||||||||| |||||| ||| ||||||||||    
T  22288826 taaagattttaatttttaatataataaatgcacaaattttcataaaatcttaccattttggatatttaaa 22288757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 25299104 - 25299034
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 230  Q
    ||||||| ||||||||||||| |||||||| || ||| ||||||||||| |||  ||||||| | ||||||    
T  25299104 gtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatcttattactttaggtgtttaaa 25299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 39806802 - 39806872
Alignment:
Q  162 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 234  Q
    ||||| |||||||||||||  ||||||| || ||||||||  |||||||||||||||| |||  |||||||||    
T  39806802 aaagatttcaattttcaatgtaataaatgcacaaattttc--aaaatattaccactttggatgcttaaaaaat 39806872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 8825278 - 8825242
Alignment:
Q  171 aattttcaatacaataaatacataaattttcataaaa 207  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  8825278 aattttcaatacactaaatacatgaattttcataaaa 8825242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 47930131 - 47930167
Alignment:
Q  171 aattttcaatacaataaatacataaattttcataaaa 207  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  47930131 aattttcaatacattaaatacacaaattttcataaaa 47930167  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 3723400 - 3723455
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattacca 215  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  3723400 gtaaagacttcaattttcaatgcaataaatacacaaattttcgtaaaatcttacca 3723455  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 36144078 - 36144125
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaat 208  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||    
T  36144078 taaagacttcaatttccaattcaataaatacacaatttttcataaaat 36144125  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 35139089 - 35139030
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||||||  |||||||    
T  35139089 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaatattttcacttta 35139030  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 18181287 - 18181238
Alignment:
Q  166 acttcaattttcaatacaataaatacataaattttcataaaatattacca 215  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  18181287 acttcaattttcaatgcaataaatacacaaactttcataaaagattacca 18181238  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 18808833 - 18808772
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 221  Q
    ||||||||||||||||  ||| |||||||| |||||| ||||||||||| |||||| |||||    
T  18808833 gtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttag 18808772  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 36782825 - 36782781
Alignment:
Q  165 gacttcaattttcaatacaataaatacataaattttcataaaata 209  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||    
T  36782825 gacttcaattttcaatacaataaatgcacaaactttcataaaata 36782781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 8785342 - 8785291
Alignment:
Q  168 ttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    |||||||| |||| ||||||||||| ||| ||||||||||| ||||||||||    
T  8785342 ttcaatttccaatgcaataaatacacaaaatttcataaaatcttaccacttt 8785291  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 1502729 - 1502675
Alignment:
Q  168 ttcaattttcaatacaataaatacataaattttcataaaatattaccactttaga 222  Q
    ||||||||||||| || |||||||  |||||||||||||| ||||| ||||||||    
T  1502729 ttcaattttcaatgcattaaatacgcaaattttcataaaaaattactactttaga 1502675  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 28460058 - 28460000
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    ||||||||||||||| |||| |||||||| || ||| ||| ||||||| ||||||||||    
T  28460058 taaagacttcaatttccaatgcaataaatgcacaaactttaataaaatcttaccacttt 28460000  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 39644200 - 39644140
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    ||||||||| |||||| |||||||||| ||  | ||| ||| |||||||||||||||||||    
T  39644200 gtaaagactacaatttccaatacaatagatgtacaaacttttataaaatattaccacttta 39644140  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 20041681 - 20041620
Alignment:
Q  162 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 223  Q
    |||||||||||||| |||| |||||||| ||||||||||| |||||| ||| || |||||||    
T  20041681 aaagacttcaatttccaatgcaataaatgcataaattttcgtaaaattttatcattttagat 20041620  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 22528791 - 22528751
Alignment:
Q  167 cttcaattttcaatacaataaatacataaattttcataaaa 207  Q
    ||||||||| | ||||| |||||||||||||||||||||||    
T  22528791 cttcaatttccgatacattaaatacataaattttcataaaa 22528751  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 168824 - 168765
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 220  Q
    ||||||||| ||||| ||||| ||||||| || ||| ||||||||||| |||||||||||    
T  168824 taaagactttaatttccaatataataaatgcacaaactttcataaaatcttaccacttta 168765  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 16109440 - 16109366
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatat 236  Q
    ||||||||||||||  |||| ||||||||  |||||||||  |||||| |||||||||||||| |||||| |||||    
T  16109440 taaagacttcaattc-caatgcaataaatgtataaatttttttaaaatgttaccactttagatgtttaaacaatat 16109366  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 5924769 - 5924827
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    |||||| || |||||||||||||||| || || ||| ||||||||||| ||||||||||    
T  5924769 taaagattttaattttcaatacaatatatgcacaaactttcataaaattttaccacttt 5924827  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 88277 - 88335
Alignment:
Q  161 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 219  Q
    |||| |||| ||||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  88277 taaaaactttaatttccaatataataaatgcacaaactttcataaaatattaccacttt 88335  T

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Target: scaffold0717 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 5028 - 4975
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 213  Q
    |||||||||||||||| |||||||| |||| |||||| |||||| |||| ||||    
T  5028 gtaaagacttcaatttccaatacaaaaaatgcataaactttcattaaatgttac 4975  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 67719 - 67772
Alignment:
Q  160 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 213  Q
    ||||||| || ||||| ||| |||||||||||| ||| ||||||||||||||||    
T  67719 gtaaagattttaatttccaaaacaataaatacacaaactttcataaaatattac 67772  T

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