View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9882_15 (Length: 306)

Name: NF9882_15
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9882_15
NF9882_15
[»] chr5 (1 HSPs)
chr5 (12-306)||(43091547-43091841)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 43091841 - 43091547
Alignment:
Q  12 agcagagagtaaagccaagaagaagaaggcggcgccggcggcggatgaggatgcagactcaccggcagatggaccagatgcagatgcagattctgatgat 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43091841 agcaaagagtaaagccaagaagaagaaggcggcgccggcggcggatgaggatgcagactcaccggcagatggaccagatgcagatgcagattctgatgat 43091742  T
Q  112 cagaaagctgctgatgatgaaaatggagttaatggattaaatcgagggttgagattcattatggtatttttcagtttgtttattggtgctttggttctat 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43091741 cagaaagctgctgataatgaaaatggagttaatggattaaatcaagggttgagattcattatggtatttttcagtttgtttattggtgctttggttctat 43091642  T
Q  212 aattgtgtcggtgtagataaaaactattctacacatgcatgacagctatggtcaaattgtgatagatattcttttcttcatttctttgattttgt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43091641 aattgtgtcggtgtagataaaaactattctacacatgcatgacagctatggtcaaattgtgatagatattcttttcttcatttctttgattttgt 43091547  T

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