View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_2 (Length: 575)
Name: NF9882_2
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_2 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 19597276 - 19596963
Alignment:
| Q |
18 |
catcacctacagtatcgccaccatcatcaccatcaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagtgaacccacc |
117 |
Q |
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| T |
19597276 |
catcaccaacagtatcaccaccatcatcaccattaccataccattctaatttttcatcgagtcacattcgtcctccatggcctcgttcagtgaacccacc |
19597177 |
T |
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| Q |
118 |
accaatatatcattcagtgatccctagaagatacccactaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccattacgaagagca |
217 |
Q |
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| T |
19597176 |
accaatatatcattcagtgatccctagaagatacccatcaggacgaccatcaacaccatcaccaacagtatcaccaccatcatcaccattacgaagagca |
19597077 |
T |
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| Q |
218 |
tcacaatctaatgaacaacataatatgcagatcattgatccagttgaaatcttcatagcctttgccgcaacctcttgtgttttctatctttcttacgtgg |
317 |
Q |
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| T |
19597076 |
tcgcaatctaatgaacaagataatatgcagatcattgatccaattgaaatcttcatagtctttgccgcaacctcttgtgttttctatctttcttacgtgg |
19596977 |
T |
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| Q |
318 |
taagggagttcatg |
331 |
Q |
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| T |
19596976 |
taagggagttcatg |
19596963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 381 - 547
Target Start/End: Complemental strand, 19596915 - 19596749
Alignment:
| Q |
381 |
gtaatattcggtgaagttctatgagttgttaattaattatattattgttgtttcagatttttgacattatcagacaattcaaagaagattgaggaatgaa |
480 |
Q |
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| T |
19596915 |
gtaatattcggtgaagttctatcagttgttaattaattatattattgttgtttcagatttttcacattatcagacaattcaaagaagattgaggaatgaa |
19596816 |
T |
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| Q |
481 |
tgaagaagattgaggagtgaataaagatgttcaaatttacatattagttacattttcaggagatatg |
547 |
Q |
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| T |
19596815 |
tgaagaagattaaggagtgaataaagatattcaaatttacatattagttacattttcaggagatatg |
19596749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 19597287 - 19597241
Alignment:
| Q |
163 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
209 |
Q |
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| T |
19597287 |
accatcaacaccatcaccaacagtatcaccaccatcatcaccattac |
19597241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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