View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_4 (Length: 554)
Name: NF9882_4
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_4 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 22 - 526
Target Start/End: Complemental strand, 1851485 - 1850992
Alignment:
| Q |
22 |
catcatcctgtaagttataagcacggagcttgtggcccaatccaataccccttccttcatgtccacgtagatatacaagtactcccctaccggcagcctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1851485 |
catcatcctgtaagttataagcacggagcttgtggcccaatccaataccccttccttcatgtccacgtagatatacaagtactcccctaccggcagcctc |
1851386 |
T |
|
| Q |
122 |
aatctgttccattgcaagtgcaagttgatttccacagtcacatcttgcagatccaaatatgtctccagttagacactctgagtgtaccctcacaagaaca |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1851385 |
aatctgttccattgcaagtgcaagttgatttccacagtcacatctggcagatccaaatatgtctccagttagacactctgagtgtaccctcacaagaaca |
1851286 |
T |
|
| Q |
222 |
tcttctccatctccaatgtcaccctgtcaaatgacaaattgtcaaaaccttgtcaaaaacccatcactaagtgttgcaaaatataggtagttccacggaa |
321 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1851285 |
tcttctccatctccgatgtcaccctgtcaaatgacaaattgtcaaaa-----------acccatcactaagtgttgcaaaatataggtagttccacggaa |
1851197 |
T |
|
| Q |
322 |
actatattatatacacaagaaatgctcaccttaaccattgcaatatgctcaatcccgtctaacagagacttataacagtatgatgtgaatggcccccaca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1851196 |
actatattatatacacaagaaatgctcaccttaaccattgcaatatgctcaatcccgtctaacagagacttataacagtatgatgtgaatggcccccaca |
1851097 |
T |
|
| Q |
422 |
ttgtaggtattcttgcagcagaagaacgttccactaattgatctctctttcttctatatctgcaataacaataagttttaatctccttgtcatgaccaaa |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1851096 |
ttgtaggtattcttgcagcagaagaacgttccactaattgatctctctttcttctatatctgcaataacaataagttttaatgtccttgtcatgagcaaa |
1850997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 37267207 - 37267431
Alignment:
| Q |
24 |
tcatcctgtaagttataagcacggagcttgtggcccaatccaataccccttccttcatgtccacgtagatatacaagtactcccctaccggcagcctcaa |
123 |
Q |
| |
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|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| | || || ||||| |||||||||| |
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| T |
37267207 |
tcatcctgtaggttatacgcacgaagcttgtggcccaatccaataccccttccttcatgtccacgaaggtataccaacacacctctaccagcagcctcaa |
37267306 |
T |
|
| Q |
124 |
tctgttccattgcaagtgcaagttgatttccacagtcacatcttgcagatccaaatatgtctccagttagacactctgagtgtaccctcacaagaacatc |
223 |
Q |
| |
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| T |
37267307 |
tctgttgcattgcaagagccaactgatttccgcagtcacacctggcagatccaaatatgtctcctgtgagacactctgagtgtaccctcacaagaacatc |
37267406 |
T |
|
| Q |
224 |
ttctccatctccaatgtcaccctgt |
248 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
37267407 |
acatccatccccaatgtcaccctgt |
37267431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 484
Target Start/End: Original strand, 37269544 - 37269682
Alignment:
| Q |
346 |
ctcaccttaaccattgcaatatgctcaatcccgtctaacagagacttataacagtatgatgtgaatggcccccacattgtaggtattcttgcagcagaag |
445 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| ||||| || ||| ||||||||| | | ||||||||||||||||| |||||| ||||||| || |
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| T |
37269544 |
ctcacctttaccatcgcaatatgctccatcccatctaaaagtgacctataacagttagcttcaaatggcccccacattgttggtattagtgcagcaccag |
37269643 |
T |
|
| Q |
446 |
aacgttccactaattgatctctctttcttctatatctgc |
484 |
Q |
| |
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||||||||||| || ||||||||| |||||||| |||| |
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| T |
37269644 |
cacgttccactagtttatctctcttccttctatacctgc |
37269682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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