View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9882_6 (Length: 418)

Name: NF9882_6
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9882_6
NF9882_6
[»] chr4 (11 HSPs)
chr4 (28-252)||(6903170-6903394)
chr4 (253-399)||(31410526-31410671)
chr4 (253-394)||(52189186-52189328)
chr4 (257-376)||(23545287-23545406)
chr4 (253-399)||(52190284-52190430)
chr4 (256-397)||(8480865-8481006)
chr4 (254-380)||(8479652-8479779)
chr4 (252-380)||(41774643-41774771)
chr4 (253-380)||(41780187-41780314)
chr4 (253-378)||(30829927-30830052)
chr4 (266-378)||(31409326-31409435)
[»] chr3 (12 HSPs)
chr3 (143-252)||(205099-205208)
chr3 (28-76)||(205221-205269)
chr3 (253-397)||(37464905-37465049)
chr3 (253-387)||(9099560-9099694)
chr3 (251-380)||(18939787-18939917)
chr3 (325-376)||(11137984-11138035)
chr3 (41-187)||(196883-197029)
chr3 (253-377)||(20997633-20997757)
chr3 (357-399)||(19810683-19810725)
chr3 (28-97)||(210145-210214)
chr3 (253-338)||(19801786-19801871)
chr3 (253-378)||(36163383-36163508)
[»] chr7 (8 HSPs)
chr7 (258-399)||(41740941-41741084)
chr7 (252-387)||(45291880-45292015)
chr7 (255-397)||(42537718-42537860)
chr7 (252-371)||(38516619-38516738)
chr7 (252-387)||(45296005-45296140)
chr7 (326-380)||(40600786-40600840)
chr7 (253-378)||(41739622-41739747)
chr7 (253-381)||(38517684-38517812)
[»] chr1 (6 HSPs)
chr1 (253-399)||(35062564-35062710)
chr1 (253-377)||(26531027-26531151)
chr1 (253-376)||(36575475-36575598)
chr1 (253-387)||(26529508-26529642)
chr1 (253-378)||(36573962-36574087)
chr1 (253-380)||(49919635-49919762)
[»] chr8 (7 HSPs)
chr8 (253-394)||(17863466-17863607)
chr8 (253-399)||(3870768-3870914)
chr8 (254-376)||(3872224-3872346)
chr8 (251-380)||(5005706-5005835)
chr8 (253-399)||(17864630-17864776)
chr8 (253-380)||(5014758-5014885)
chr8 (252-387)||(32565561-32565696)
[»] chr5 (3 HSPs)
chr5 (256-399)||(35967351-35967494)
chr5 (254-387)||(16727813-16727946)
chr5 (28-68)||(29838037-29838077)
[»] chr2 (8 HSPs)
chr2 (253-379)||(40894806-40894932)
chr2 (253-376)||(31620525-31620648)
chr2 (253-399)||(36669070-36669216)
chr2 (253-376)||(36666201-36666325)
chr2 (253-380)||(35298556-35298683)
chr2 (253-378)||(31622041-31622166)
chr2 (253-380)||(35306043-35306170)
chr2 (253-378)||(4753528-4753653)
[»] scaffold0115 (4 HSPs)
scaffold0115 (252-380)||(6014-6142)
scaffold0115 (252-380)||(13754-13882)
scaffold0115 (253-376)||(4336-4459)
scaffold0115 (253-376)||(12076-12199)
[»] chr6 (6 HSPs)
chr6 (253-387)||(9448693-9448827)
chr6 (253-378)||(18191746-18191871)
chr6 (326-387)||(227150-227211)
chr6 (253-283)||(226121-226151)
chr6 (253-283)||(30758903-30758933)
chr6 (253-357)||(31855651-31855755)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 6903170 - 6903394
Alignment:
Q  28 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaataa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6903170 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaacaa 6903269  T
Q  128 aataagggnnnnnnnggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttgtcacatgactgccacttg 227  Q
    ||  | ||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  6903270 aaataagggttttttggattgaattcattggcagcaacctctgcatttttaaaagcatgtccaaacctgattttgagctttatcacttgactgccacttg 6903369  T
Q  228 tttcaaccctggaactttttctagg 252  Q
    |||||||||||||||||||||||||    
T  6903370 tttcaaccctggaactttttctagg 6903394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 31410671 - 31410526
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||| |||| ||| | ||||||||||| | |||||||| | |||||||||||||||||||| ||||||||||||| | ||| |||||||||||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaactcctc-aatatctgttccgtt 31410573  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31410572 agtcacacacgtccaaaacgttaactgaacgttaagtgtgatgatgt 31410526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 52189186 - 52189328
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||| | | |||| ||||||||||| |||||||||||| | |||||| |||||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  353 agtcatacacgtccaaaacgttaac-tgaatgttaagtgtgat 394  Q
    ||||| |  | |||||||||||||| |||| ||||||||||||    
T  52189286 agtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat 52189328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 23545406 - 23545287
Alignment:
Q  257 aaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttagtc 356  Q
    ||||||||||||| ||||||||||||| || |||||||||| | |||  |||||||||  |||| || ||||||||||  ||||||||||| | ||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtttcattagtc 23545307  T
Q  357 atacacgtccaaaacgttaa 376  Q
    ||||||||||||||| ||||    
T  23545306 atacacgtccaaaacattaa 23545287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 52190430 - 52190284
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||||||||  | ||||||||||   | | || ||||||||||| || |||||||||||||||||||||||  |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||||| |  | |||||||||||||||   |||||| |||| ||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaaatgtgctgatgt 52190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 397
Target Start/End: Complemental strand, 8481006 - 8480865
Alignment:
Q  256 taaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttagt 355  Q
    ||||| |||||||| |||| |||||||| |  | |||||||| | ||| |||| |||||| ||||  | ||||||||||||||| |||| ||||||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  356 catacacgtccaaaacgttaactgaatgttaagtgtgatgat 397  Q
    ||| | | |||||||||||||||||  ||||| |||| ||||    
T  8480906 cattcccatccaaaacgttaactgatcgttaactgtgctgat 8480865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 8479652 - 8479779
Alignment:
Q  254 agtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaa-ctcccccaatgtctgttccgtt 352  Q
    |||||| |||||||||||||| |||||||| |  |||||||||||| |||||||| ||||||  |||  | |||||| ||||||||| |||| |||||||    
T  8479652 agtaaatcctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaatacaacgcaccaaaaacctcccccaaagtctcttccgtt 8479751  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    ||||||   | ||||||| |||||||||    
T  8479752 agtcatttccatccaaaatgttaactga 8479779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 41774643 - 41774771
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||| ||||||||||||| |||||||| || | ||||||| || ||| ||||||||||  ||||  |  ||||||||||| || || | ||||||    
T  41774643 ggagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtgtcttccgt 41774742  T
Q  352 tagtcatacacgtccaaaacgttaactga 380  Q
    ||||||| |   |||||||||||||||||    
T  41774743 tagtcattccgatccaaaacgttaactga 41774771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 41780314 - 41780187
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||  |||||||| || | ||||||| || ||||||||||||||  ||||  |  ||||||||| | || || | |||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 41780215  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    |||||| |   |||||||||||||||||    
T  41780214 agtcattccgatccaaaacgttaactga 41780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 30829927 - 30830052
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||||||    | |||||||| | | | |||  |||||| |||| || |||||||||||||||||  |||| ||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 30830026  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  30830027 agtcaaatgcatccaaaacgttaact 30830052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 378
Target Start/End: Original strand, 31409326 - 31409435
Alignment:
Q  266 tttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttagtcatacacgtc 365  Q
    ||||||||| ||||||||||| | ||||||| || ||| | || ||||| ||||| || ||||||||||| ||   |||||||||||||||| |  | ||    
T  31409326 tttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatc 31409422  T
Q  366 caaaacgttaact 378  Q
    |||||||||||||    
T  31409423 caaaacgttaact 31409435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 205208 - 205099
Alignment:
Q  143 ggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttgtcacatgactgccacttgtttcaaccctggaac 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||    
T  205208 ggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttatcacttgactgccaattgtttcaacccttgaac 205109  T
Q  243 tttttctagg 252  Q
    ||||||||||    
T  205108 tttttctagg 205099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 205269 - 205221
Alignment:
Q  28 caatttaagtgacaacataaataactcaacatttactttaagccaaaaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  205269 caatttaagtgacaacataaataactcaacatttactttaagccaaaaa 205221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 397
Target Start/End: Complemental strand, 37465049 - 37464905
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||| |||||||||| ||||||||    | ||||||||   | | |||  |||||| |||| || |||||||||||  ||||||| |||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtt 37464950  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgat 397  Q
     ||||| |||||||||||||||||||||| ||||| |||| ||||    
T  37464949 tgtcattcacgtccaaaacgttaactgaacgttaattgtgttgat 37464905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 387
Target Start/End: Original strand, 9099560 - 9099694
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| | |||||| || | |||||||  | | | ||||||||||| |||| || |||||||||   ||||||  ||||||||    
T  9099560 gagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgtt 9099659  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    ||||| | | |||||||||||||||| | ||||||    
T  9099660 agtcaaataagtccaaaacgttaacttagtgttaa 9099694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 18939917 - 18939787
Alignment:
Q  251 gggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccg 350  Q
    |||||||||||||||||||||||| |||||||| || | ||||||| || ||| ||| | ||||  ||||  |  | ||||||||| || |||| |||||    
T  18939917 gggagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaaccacgtccctaagtcaagaaaacgcaaaacaaactccccgaaagtctcttccg 18939818  T
Q  351 ttagtca-tacacgtccaaaacgttaactga 380  Q
    ||||||| ||| | |||||||||||||||||    
T  18939817 ttagtcattacccatccaaaacgttaactga 18939787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 11137984 - 11138035
Alignment:
Q  325 caaaaactcccccaatgtctgttccgttagtcatacacgtccaaaacgttaa 376  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  11137984 caaaaactccctcaatgtctgtttctttagttatacacgtccaaaacgttaa 11138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 196883 - 197029
Alignment:
Q  41 aacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaataaaataagggnnnnn 140  Q
    ||||||||||||||||||| |||||||| |||||| ||| || ||||||| ||||||  |  |||  |||| || ||| ||||| ||||  | ||         
T  196883 aacataaataactcaacatatactttaaaccaaaagctataaagtaaaatcctcaccgtataattctgcttggcgattattgaacaaaaataagggtttt 196982  T
Q  141 nnggattgaattcattggcagcaacctctgcacttttaaaagcatgt 187  Q
      || |||||||||||||||||||||||||| ||| || ||||||||    
T  196983 ttggtttgaattcattggcagcaacctctgctcttgtagaagcatgt 197029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 377
Target Start/End: Original strand, 20997633 - 20997757
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||| || || | |||||||  | | | || | |||||| |||| || ||||||||||  ||||||  ||| ||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgtt 20997732  T
Q  353 agtcatacacgtccaaaacgttaac 377  Q
    ||||| | | |||||||||||||||    
T  20997733 agtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 19810725 - 19810683
Alignment:
Q  357 atacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    |||| |||||||||||||||| ||| |||||||||||||||||    
T  19810725 atactcgtccaaaacgttaaccgaacgttaagtgtgatgatgt 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 210145 - 210214
Alignment:
Q  28 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcacc 97  Q
    |||||| | |||||||| ||||||||||||  ||||||||| |||||||||| || |  |||||||||||    
T  210145 caatttcaatgacaacaaaaataactcaacgcttactttaaaccaaaaactataaagagaaattctcacc 210214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 19801786 - 19801871
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactccccca 338  Q
    |||||||||||||||  ||||| |||||||| || | |||||||||  ||| | |  ||||||||||| || ||||||||||||||    
T  19801786 gagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca 19801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 36163383 - 36163508
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||| |||||||| ||| ||||||||  | | |||||||| |   | ||| |||||||| ||  |||||||||||||||||||||  |||  |||    
T  36163383 gagtaaaccttcatttggatccctgaaagtgtccctcgctatcagaccaatccctcaatcaatttaatgaatcaaaaactcccccaatgtacgttatgtt 36163482  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  36163483 agtcaaatgcatccaaaacgttaact 36163508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 41741084 - 41740941
Alignment:
Q  258 aaccctcatttgggtccttgaaagtgcacattgct--atcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttagt 355  Q
    ||||||||||||||||| ||||||| ||| |||||  |||||| |||| || | |||||||||||||| |||||||||||||||| | ||||||||||||    
T  41741084 aaccctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagt 41740985  T
Q  356 catacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||| ||||||||||||||||||||   |||||||||||||||||    
T  41740984 catccacgtccaaaacgttaactggccgttaagtgtgatgatgt 41740941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 45292015 - 45291880
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||||||||||||||||| |||||||| || | |||||||| | | | ||||||||||  || | || ||||||||||| ||| |||| ||||||    
T  45292015 ggagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgt 45291916  T
Q  352 tagtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    ||||||| ||| ||||||||| |||| || ||||||    
T  45291915 tagtcattcacatccaaaacgctaacagagtgttaa 45291880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 397
Target Start/End: Original strand, 42537718 - 42537860
Alignment:
Q  255 gtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttag 354  Q
    ||||||||||| |||||||| ||||||||    | ||||||||   | | ||||||||||| |||| || |||||||||||| ||||||| ||||||| |    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttg 42537817  T
Q  355 tcatacacgtccaaaacgttaactgaatgttaagtgtgatgat 397  Q
    |||| ||||||||||||||||| |||| ||||| |||| ||||    
T  42537818 tcattcacgtccaaaacgttaattgaacgttaattgtgttgat 42537860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 38516619 - 38516738
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||| | | | |||| |||||  || | || ||||||||||| ||| || | | ||||    
T  38516619 ggagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaaagtttctcccgt 38516718  T
Q  352 tagtcatacacgtccaaaac 371  Q
    ||||||| ||| ||||||||    
T  38516719 tagtcattcacatccaaaac 38516738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 45296140 - 45296005
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||||||||||||||||| | |||||| || | |||||||| | | | | || |||||  || | || ||||||||||| ||| |||| ||||||    
T  45296140 ggagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgt 45296041  T
Q  352 tagtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    ||||||| ||| ||||||||| |||| || ||||||    
T  45296040 tagtcattcacatccaaaacgctaacagagtgttaa 45296005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 40600786 - 40600840
Alignment:
Q  326 aaaaactcccccaatgtctgttccgttagtcatacacgtccaaaacgttaactga 380  Q
    ||||||||||| || |||| ||||||||||||| | |||||||||||||||||||    
T  40600786 aaaaactccccgaaagtctcttccgttagtcattcccgtccaaaacgttaactga 40600840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 41739622 - 41739747
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||| | |||||||     | |||||||| | | | |||  |||||| |||| || |||||||||||||||||  |||| ||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgtt 41739721  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  41739722 agtcaaatgcatccaaaacgttaact 41739747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 38517812 - 38517684
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||||||||| |||| | |||||  |||| |||||||| | ||| |||| |||||  ||| | ||||||| ||||| || |||    ||||||    
T  38517812 gagtaaaccctcatttgagtccctaaaagtatacatcgctatcagacacgtccctggatcaacgaaaattatcaaaagctccctcattgttaactccgtt 38517713  T
Q  353 agtcatacacgtccaaaacgttaactgaa 381  Q
    |||||||   |||||||||||||| ||||    
T  38517712 agtcatattagtccaaaacgttaagtgaa 38517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 35062564 - 35062710
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||| |||||||||| | | ||||| ||| | | ||||| || | | ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  35062564 gagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgtt 35062663  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    |||||| |||||||||||| |||| |||| |||||||||||||||||    
T  35062664 agtcatccacgtccaaaacattaattgaacgttaagtgtgatgatgt 35062710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 377
Target Start/End: Complemental strand, 26531151 - 26531027
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||| ||||| |||||||| || | ||||| || | ||| ||||||||||  |||| || ||||||||||| |||||||| ||| | |    
T  26531151 gagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgct 26531052  T
Q  353 agtcatacacgtccaaaacgttaac 377  Q
    |||||||||||||||||||||||||    
T  26531051 agtcatacacgtccaaaacgttaac 26531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 376
Target Start/End: Complemental strand, 36575598 - 36575475
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||||||||| |||| |||||||| || | |||||||| | ||| | | ||||||  |||| || |||||||| || ||||||||||||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  353 agtcatacacgtccaaaacgttaa 376  Q
    ||||||||| ||||||||||||||    
T  36575498 agtcatacaagtccaaaacgttaa 36575475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 387
Target Start/End: Original strand, 26529508 - 26529642
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| |||||||| || | |||||||| | ||| ||||||||||  |||| ||  |||||||||| |||||| ||||| |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    ||||| |  | |||||||||||||||  |||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttgatgttaa 26529642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 36573962 - 36574087
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||| ||||||| ||||| |||||||| || | ||||||| || ||| ||||||||||  |||| ||  |||||||||| ||||||||||||||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaact 36574087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 49919762 - 49919635
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||| ||||||||||||||||||||||  ||| |||||||| | | | |||| |||||| ||||  | ||||||||||||||| |||| |||| |     
T  49919762 gagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccatc 49919663  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    |||||| | | |||| ||||||||||||    
T  49919662 agtcattcccatccagaacgttaactga 49919635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 253 - 394
Target Start/End: Original strand, 17863466 - 17863607
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||| | | | || ||||||||||  || |||||||||| ||||||| ||||||||     
T  17863466 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgtc 17863565  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgat 394  Q
    ||||| |  | |||||||||||||||||| ||||||||||||    
T  17863566 agtcaaatgcatccaaaacgttaactgaacgttaagtgtgat 17863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 3870768 - 3870914
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||||| |||||||| ||||| ||||  | |||||||||| ||| |||  ||||||||| | |||||||||||||||||||   |||||||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    |||||    ||||||||||||||| |   |||||| |||||||||||    
T  3870868 agtcaatttcgtccaaaacgttaagttcgtgttaattgtgatgatgt 3870914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  254 agtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtta 353  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||||| ||| |||| ||||||||||| || ||||||||| | |||||  | ||||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  354 gtcatacacgtccaaaacgttaa 376  Q
    ||||    |||||||||||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 5005706 - 5005835
Alignment:
Q  251 gggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccg 350  Q
    |||||||||||||||||||||||| |||||||| || | ||||||| || ||| ||||||||||  ||||  |  ||||||||| | || || | |||||    
T  5005706 gggagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccg 5005805  T
Q  351 ttagtcatacacgtccaaaacgttaactga 380  Q
    |||||||| |   |||||||||||||||||    
T  5005806 ttagtcattccgatccaaaacgttaactga 5005835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 17864776 - 17864630
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||| ||||||||||||||  | |||||||||| | | || | ||||| ||||| || ||| ||||||| |||||||| ||  |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||||| |  | |||||||| ||||||   |||||| |||| ||||||    
T  17864676 agtcaaatgcatccaaaacattaacttggtgttaattgtgttgatgt 17864630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 5014885 - 5014758
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| |||||||| || | ||||||| || ||| | ||||||||  ||||  |  ||||||||| | || || | |||||||    
T  5014885 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 5014786  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    |||||| |   |||||||||||||||||    
T  5014785 agtcattccgatccaaaacgttaactga 5014758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 32565696 - 32565561
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||||||| ||| ||||| ||||||||  | | |||||||| |  || |||  ||||||| ||  |||||||||||||||||||||  |||  ||    
T  32565696 ggagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgt 32565597  T
Q  352 tagtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    |||||| |  | |||||||||||||||  |||||||    
T  32565596 tagtcaaatgcatccaaaacgttaacttgatgttaa 32565561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 399
Target Start/End: Original strand, 35967351 - 35967494
Alignment:
Q  256 taaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgttagt 355  Q
    ||||||||||||||| ||| ||||||| ||||| | |||||||| | | |  |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagt 35967450  T
Q  356 catacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||  |||||||||||| ||||| |    ||||||||||||||||    
T  35967451 caaccacgtccaaaacattaacgggcccttaagtgtgatgatgt 35967494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 254 - 387
Target Start/End: Original strand, 16727813 - 16727946
Alignment:
Q  254 agtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtta 353  Q
    ||||||||||||||||||||  |||||||| || | |||||||||| ||||||||||||||  |||| ||  ||||||| || |||||||||||||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  354 gtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    |||| |  | |||||||| ||||||  |||||||    
T  16727913 gtcaaatgcatccaaaacattaacttgatgttaa 16727946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 29838037 - 29838077
Alignment:
Q  28 caatttaagtgacaacataaataactcaacatttactttaa 68  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  29838037 caatttaagtggaaacataaataactcaacatttactttaa 29838077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 253 - 379
Target Start/End: Complemental strand, 40894932 - 40894806
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||| ||| | |||||| || | ||||||||   ||| |||| |||||| |||| ||  ||||||||||||||||||| |||||||    
T  40894932 gagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 40894833  T
Q  353 agtcatacacgtccaaaacgttaactg 379  Q
    |||||| ||||||||||||||||||||    
T  40894832 agtcattcacgtccaaaacgttaactg 40894806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 376
Target Start/End: Original strand, 31620525 - 31620648
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||||||||| |||| |||||||| || | ||||||||   ||| | ||||||||  |||| || ||||||||| | ||||||||||||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgtt 31620624  T
Q  353 agtcatacacgtccaaaacgttaa 376  Q
    ||||||||| ||||||||||||||    
T  31620625 agtcatacaagtccaaaacgttaa 31620648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 36669216 - 36669070
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||| |||||| ||| ||||||||||| | |||||||||| ||| ||||||||||  |||| ||  |||||||||| |||||||||||| |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaagtgtgatgatgt 399  Q
    ||||| |  | |||||||||||||||  || ||||  ||||||||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaacggtgatgatgt 36669070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 376
Target Start/End: Original strand, 36666201 - 36666325
Alignment:
Q  253 gagtaaaccctcatttgggtc-cttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    ||||||||||| ||||||||| |||||||||| || | || || || | | || |||||||||  |||| ||  ||||||| || |||||||||||||||    
T  36666201 gagtaaacccttatttgggtcacttgaaagtgtacctcgcaattagacacatttctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgt 36666300  T
Q  352 tagtcatacacgtccaaaacgttaa 376  Q
    ||||||||||||| |||||||||||    
T  36666301 tagtcatacacgttcaaaacgttaa 36666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 380
Target Start/End: Original strand, 35298556 - 35298683
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||| | |||||||| || | ||||||| || ||| ||||||||||  ||||  |  ||||||||||| || |||| || ||||    
T  35298556 gagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtctctttcgtt 35298655  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    |||||| | | |||||||||||||||||    
T  35298656 agtcattcccatccaaaacgttaactga 35298683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 378
Target Start/End: Complemental strand, 31622166 - 31622041
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    ||||||||||| |||||||||| |||||||| || | | ||||| || ||| ||||||||||  |||| ||  |||||||||| |||||| |||||||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
     |||| |  | |||||||||||||||    
T  31622066 tgtcaaatgcatccaaaacgttaact 31622041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 35306170 - 35306043
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||| ||||| |||||||| || | |||||||  |  || ||||||||||  |||| ||  ||||||||||| || |||| ||| |||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctgtt 35306071  T
Q  353 agtcatacacgtccaaaacgttaactga 380  Q
    |||||| | | |||||||||||||||||    
T  35306070 agtcattctcatccaaaacgttaactga 35306043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 4753528 - 4753653
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||| ||||||||| ||||||||    | |||||||| |  || |||| ||||||||||  |||||||||||||| |||||| ||||  |||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  4753628 agtcaaatgcatccaaaacgttaact 4753653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 6142 - 6014
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    |||||||||||||||||| |||| |||||||| || | |||||||||| ||| |||  || ||| ||||  | |||||||||||||||  ||| ||| ||    
T  6142 ggagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgt 6043  T
Q  352 tagtcatacacgtccaaaacgttaactga 380  Q
    ||||||| | |||||||||| ||||||||    
T  6042 tagtcattcccgtccaaaacattaactga 6014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 13882 - 13754
Alignment:
Q  252 ggagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgt 351  Q
    |||||||||||||||||| |||| |||||||| || | |||||||||| ||| |||  || ||| ||||  | |||||||||||||||  ||| ||| ||    
T  13882 ggagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgt 13783  T
Q  352 tagtcatacacgtccaaaacgttaactga 380  Q
    ||||||| | |||||||||| ||||||||    
T  13782 tagtcattcccgtccaaaacattaactga 13754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 376
Target Start/End: Original strand, 4336 - 4459
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||| ||||| ||| | |||||| | || |||||||||| ||| |||  |||||| ||||  | ||||||||||||||| |||| |||| ||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 4435  T
Q  353 agtcatacacgtccaaaacgttaa 376  Q
    |||||| | | |||||||||||||    
T  4436 agtcattcccatccaaaacgttaa 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 376
Target Start/End: Original strand, 12076 - 12199
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||| ||||| ||| | |||||| | || |||||||||| ||| |||  |||||| ||||  | ||||||||||||||| |||| |||| ||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 12175  T
Q  353 agtcatacacgtccaaaacgttaa 376  Q
    |||||| | | |||||||||||||    
T  12176 agtcattcccatccaaaacgttaa 12199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 9448827 - 9448693
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| |||||||| || | |||||||| | | | |||| |||||  || | || ||||||||||| ||| |||| |||| ||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttccttt 9448728  T
Q  353 agtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    |||||| ||| ||||||||| |||| || ||||||    
T  9448727 agtcattcacatccaaaacgctaacagagtgttaa 9448693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 378
Target Start/End: Original strand, 18191746 - 18191871
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||||||||||||||||| ||||||||  |   |||||||| |  || ||| |||||||| ||  ||||||||||||||||||||| ||||  |||    
T  18191746 gagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgtt 18191845  T
Q  353 agtcatacacgtccaaaacgttaact 378  Q
    ||||| |  | |||||||||||||||    
T  18191846 agtcaaatgcatccaaaacgttaact 18191871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 227211 - 227150
Alignment:
Q  326 aaaaactcccccaatgtctgttccgttagtcatacacgtccaaaacgttaactgaatgttaa 387  Q
    ||||||||||| || |||| ||||||||||||| | | ||||||||||||||||| ||||||    
T  227211 aaaaactccccgaaagtcttttccgttagtcattcccatccaaaacgttaactgagtgttaa 227150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 226121 - 226151
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtg 283  Q
    |||||||||||||||||||||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtg 226151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 30758933 - 30758903
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtg 283  Q
    |||||||||||||||||||||||||||||||    
T  30758933 gagtaaaccctcatttgggtccttgaaagtg 30758903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 357
Target Start/End: Original strand, 31855651 - 31855755
Alignment:
Q  253 gagtaaaccctcatttgggtccttgaaagtgcacattgctatcagccgcgttcctgaatcaattaaactaatcaaaaactcccccaatgtctgttccgtt 352  Q
    |||||||| ||||||||  || |||||||||    | |||||||| |  ||||||||||||||| ||  ||||||||||||||| ||||| ||||  |||    
T  31855651 gagtaaactctcatttgaatctttgaaagtgtctctcgctatcagaccagttcctgaatcaatttaatgaatcaaaaactcccctaatgtatgttatgtt 31855750  T
Q  353 agtca 357  Q
    |||||    
T  31855751 agtca 31855755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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