View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_7 (Length: 412)
Name: NF9882_7
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_7 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 154 - 396
Target Start/End: Complemental strand, 48883878 - 48883632
Alignment:
| Q |
154 |
aaataatgatcatactaatatttttataaaatacctatggtattgatcacaatattgttctatataattcattcaccaactagtggaccacacgctctaa |
253 |
Q |
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| T |
48883878 |
aaataatgatcatactaatatttttataaaatacctatggtattgatcacaatattgttctatataattcattcaccaactagtggaccacaagctctaa |
48883779 |
T |
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| Q |
254 |
aaaggtcttagcttattgataattatgaagcaaagaattagttcccccaacctttttagtgtcatccactcaggtcttgacacttactgatggtgatca- |
352 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48883778 |
aaagatcttagcttattgataattatgaagcaaagaattagttcccccaacctttttagtgtcatccactcaggtcttgacacttactgatagtgatcac |
48883679 |
T |
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| Q |
353 |
---ctcattctccactttagagcattgtttaattttaattctactca |
396 |
Q |
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| T |
48883678 |
tcactcattctccactttggagcattgtttaattttaattctactca |
48883632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 48883951 - 48883874
Alignment:
| Q |
24 |
ggttgttccaaactgtaatttcctcaaactcatgtcccaggttccgtactttcttcaaaagaagtgatgttccaaata |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
48883951 |
ggttgttccaaactgtaatttcctcaaactcatgtcccaagttccgtactttcttcaaaagaagtgatgttgcaaata |
48883874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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