View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9882_8 (Length: 410)
Name: NF9882_8
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 182 - 399
Target Start/End: Complemental strand, 45287613 - 45287394
Alignment:
| Q |
182 |
cactacacgggaggctacaaaatcttcctctggatagtgtatttttaatcttccactctcattaataatatacaaacactctatttttcaatgctaacct |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45287613 |
cactacacaggaggctacaaaatcttcctctgaatagtgtattttcagtcttccactctcattaataatatacaaacactctatttttcaatgctaacct |
45287514 |
T |
|
| Q |
282 |
caaacaaatcaatatgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatattccc-aaacatggggggctataagtatacgattt |
379 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
45287513 |
caaacaaatcaatatgtcttatacatgggggctataagcatctgaggatagtttaaaattttatattccctaaacatggggggctataagtatacaattt |
45287414 |
T |
|
| Q |
380 |
aagtccaaaatttcatattc |
399 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45287413 |
aagtccaaaatttcatattc |
45287394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 45287790 - 45287687
Alignment:
| Q |
1 |
atactaacctctaacaaatcaatatttcttatacaagggtttaaagtatttgatggtagttcaaaaatttatattccctaaatcaattatatgattgagt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45287790 |
atactaacctcaaacaaatcaatattttttatacaagggtttaaagtatttgatggtagttcaaaattttatattccctaaatcaattatatgattgagt |
45287691 |
T |
|
| Q |
101 |
taac |
104 |
Q |
| |
|
|||| |
|
|
| T |
45287690 |
taac |
45287687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 45287880 - 45287713
Alignment:
| Q |
182 |
cactacacgggaggc-tacaaaatcttcctctggatagtgtatttttaatcttccactctcattaataatatacaaacactc--tatttttcaatgctaa |
278 |
Q |
| |
|
||||||||||||| | | |||||||||||| |||| | |||||||| | ||||||||||||| ||||||||||||||||| |||||| |||| |||| |
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|
| T |
45287880 |
cactacacgggagacgtgcaaaatcttcctatggacaatgtattttcagtcttccactctca---ataatatacaaacactccgtattttgcaatactaa |
45287784 |
T |
|
| Q |
279 |
cctcaaacaaatcaatatgtcttatacatggggctataagtatttgaggatagtttaaaattttatattccc |
350 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||| || |||||||||| | ||||| |||||||||||||||| |
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|
| T |
45287783 |
cctcaaacaaatcaatattttttatacaagggttta-aagtatttgatggtagttcaaaattttatattccc |
45287713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 182 - 402
Target Start/End: Original strand, 31609181 - 31609406
Alignment:
| Q |
182 |
cactacacgggaggctacaaaatcttcctctggatagtgtatttttaatcttccactctcattaataatatacaaacactctatttttcaatgctaacct |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
31609181 |
cactacacgggaggctacaaaatcttcctctggatagtgtattttcagtcttccactctcattaataatatacaatcactctatttttcaatgctaatct |
31609280 |
T |
|
| Q |
282 |
caaacaaatcaata----tgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatattccc-aaacatggggggctataagtatacg |
375 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
31609281 |
caaacaaatcaatatgtttgtcttatacatgggggctataagtatttgaggatagtttaaaattttatattccctaaacat-gggggctataagtatacg |
31609379 |
T |
|
| Q |
376 |
atttaagtccaaaatttcatattcttc |
402 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31609380 |
atttaagtccaaaatttcatattcttc |
31609406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31609003 - 31609107
Alignment:
| Q |
1 |
atactaacctctaacaaatcaatatttcttatacaagggttta-aagtatttgatggtagttcaaaaatttatattccctaaatcaattatatgattgag |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
31609003 |
atactaacctcaaacaaatcaatatttcttatacaagggtctataagtatttgatggtagtttaaaattttatattccataaatcaattatatgattgag |
31609102 |
T |
|
| Q |
100 |
ttaac |
104 |
Q |
| |
|
||||| |
|
|
| T |
31609103 |
ttaac |
31609107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 31608974 - 31609080
Alignment:
| Q |
245 |
aataatatacaaacactc--tatttttcaatgctaacctcaaacaaatcaatatgtcttatacatggggctataagtatttgaggatagtttaaaatttt |
342 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||||||||| |
|
|
| T |
31608974 |
aataatatacaaacactccgtattttgcaatactaacctcaaacaaatcaatatttcttatacaagggtctataagtatttgatggtagtttaaaatttt |
31609073 |
T |
|
| Q |
343 |
atattcc |
349 |
Q |
| |
|
||||||| |
|
|
| T |
31609074 |
atattcc |
31609080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 402
Target Start/End: Complemental strand, 1059162 - 1059021
Alignment:
| Q |
267 |
tttcaatgctaacctcaaacaaatcaatatgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatatt--cccaaacatggggggc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||| | |||||| |||||||||||| | ||| ||||| || |
|
|
| T |
1059162 |
tttcaatgctaacctcaaacaaatcaatatttcctatacatgggggctataaatatttgatggtagtttgaaattttatatttctctaaatatgggatgc |
1059063 |
T |
|
| Q |
364 |
t---ataagtatacgatttaagtccaaaatttcatattcttc |
402 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1059062 |
tataataagtatttgatttaagtcctaaatttcatattcttc |
1059021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 208 - 402
Target Start/End: Complemental strand, 12630688 - 12630486
Alignment:
| Q |
208 |
cctctggatagtgtatttttaatcttccactctcattaataatatacaaacactctatttttcaatgctaacctcaaacaaatcaatat----gtcttat |
303 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12630688 |
cctctggatagtgtattttcagtcttccactctcattaataatatacaaacactctatatttcaatgctaacctcaaacaaatcaatatgtctgtcttat |
12630589 |
T |
|
| Q |
304 |
acatgggg---ctataagtatttgaggatagtttaaaattttatattccc-aaacatggggggctataagtatacgatttaagtccaaaatttcatattc |
399 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12630588 |
acatgggggctatataagtatttgaggataatttaaaattttatattccctaaacatggggggctataagtatacgatttaagtccaaaatttcatattc |
12630489 |
T |
|
| Q |
400 |
ttc |
402 |
Q |
| |
|
||| |
|
|
| T |
12630488 |
ttc |
12630486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 402
Target Start/End: Original strand, 34029551 - 34029692
Alignment:
| Q |
267 |
tttcaatgctaacctcaaacaaatcaatatgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatatt--cccaaacatggggggc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||| | |||||| |||||||||||| | ||| ||||| || |
|
|
| T |
34029551 |
tttcaatgctaacctcaaacaaatcaatatttcctatacatgggggctataaatatttgatggtagtttgaaattttatatttctctaaatatgggatgc |
34029650 |
T |
|
| Q |
364 |
t---ataagtatacgatttaagtccaaaatttcatattcttc |
402 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
34029651 |
tataataagtatttgatttaagtcctaaatttcatattcttc |
34029692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 402
Target Start/End: Original strand, 14938661 - 14938802
Alignment:
| Q |
267 |
tttcaatgctaacctcaaacaaatcaatatgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatatt--cccaaacatggggggc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| | |||||| |||||||||||| | ||| ||||| ||| |
|
|
| T |
14938661 |
tttcaatgctaacctcaaacaaatcaatatttcctatacatgggggctataagtatttgatggtagtttgaaattttatatttctctaaatatgggaggc |
14938760 |
T |
|
| Q |
364 |
t---ataagtatacgatttaagtccaaaatttcatattcttc |
402 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
14938761 |
tataataagtatttgatttaagtcctaaatttcatattcttc |
14938802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 402
Target Start/End: Original strand, 34987871 - 34988012
Alignment:
| Q |
267 |
tttcaatgctaacctcaaacaaatcaatatgtcttatacatgg-ggctataagtatttgaggatagtttaaaattttatatt--cccaaacatggggggc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| | |||||| |||||||||||| | ||| ||||| ||| |
|
|
| T |
34987871 |
tttcaatgctaacctcaaacaaatcaatatttcctatacatggtggctataattatttgatggtagtttgaaattttatatttctctaaatatgggaggc |
34987970 |
T |
|
| Q |
364 |
t---ataagtatacgatttaagtccaaaatttcatattcttc |
402 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
34987971 |
tataataagtatttgatttaagtcctaaatttcatattcttc |
34988012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 22792693 - 22792578
Alignment:
| Q |
287 |
aaatcaatatgtcttatacat-ggggctataagtatttgaggatagtttaaaattttatattcccaaacatggggggctataagtatacgatttaagtcc |
385 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||||||| | ||||| |||||||||||||||| || || ||||||| |||||| ||||||||||| |
|
|
| T |
22792693 |
aaatcaatatttcttctacataggggctataagtatttgatggtagttcaaaattttatattccctaa-atatggggctaaaagtatttgatttaagtcc |
22792595 |
T |
|
| Q |
386 |
aaaatttcatattcttc |
402 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
22792594 |
aaaattttatattcttc |
22792578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 22792693 - 22792624
Alignment:
| Q |
16 |
aaatcaatatttcttataca-agggttta-aagtatttgatggtagttcaaaaatttatattccctaaat |
83 |
Q |
| |
|
||||||||||||||| |||| |||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22792693 |
aaatcaatatttcttctacataggggctataagtatttgatggtagttcaaaattttatattccctaaat |
22792624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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