View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_9 (Length: 408)
Name: NF9882_9
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_9 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 140 - 396
Target Start/End: Complemental strand, 46546949 - 46546690
Alignment:
| Q |
140 |
ctttcccacattgtagctcctccataaagaaattccaggctgacatggattccaaaatgatcnnnnnnnttcaacttaatactcttaaaccatatattaa |
239 |
Q |
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| T |
46546949 |
ctttcccacattgtagctcctccataaagaaattctaggctgacatggattccaaaatgatcaaaaaaattcaact-aatactcttaaaccatatattaa |
46546851 |
T |
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| Q |
240 |
gatatggtgattgacaacctatggttgtccacttatttc--nnnnnnnnnnnnngaaactatgtttgttcatttatcattcctc-aaatagtata-tttt |
335 |
Q |
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| T |
46546850 |
gatatggtgattgacaacctatggttgtccacttatttcaaaaaaaaaaaaaaaaaaactatgtttgttcatttatcattcctcaaaataatatattttt |
46546751 |
T |
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| Q |
336 |
agttacaggcaatgaccgttgattgcagcgaaaaatattttactcctttatccaatatttt |
396 |
Q |
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| T |
46546750 |
agttacaggcaatgaccgttgattgcagcgaaaaatattttactcctttatccaatatttt |
46546690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46547086 - 46547030
Alignment:
| Q |
1 |
gatataaagggcgagaatatctccaataatatttatcgacttctagctacggctcgt |
57 |
Q |
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| T |
46547086 |
gatataaaggacgagaatatctccaataatatttatcgacttctagctacggctcgt |
46547030 |
T |
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