View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_low_1 (Length: 898)
Name: NF9882_low_1
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 686; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 15 - 888
Target Start/End: Original strand, 4633998 - 4634872
Alignment:
| Q |
15 |
gacatcaactatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgacagtagaatttgta-tgctcatcaaatcatcaatag |
113 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4633998 |
gacatcaactatggtttttgagccggcagcgctacttagcctaattgtttacatcaaaacatgacagtagaatttgtaatgctcatcaaatcatcaatag |
4634097 |
T |
|
| Q |
114 |
tagaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnn---tcccagctttacacaatgtatttaacttgtagcttcttcacttgct |
210 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
4634098 |
tagaatatatcacacaccccttgtttctagcaagcagaagcaaaaaaaaaaaaatcccagctttaca--atgtatttaacttttagcttcttcacttgct |
4634195 |
T |
|
| Q |
211 |
ataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacattta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634196 |
ataaccaatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacattta |
4634295 |
T |
|
| Q |
311 |
aaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
4634296 |
aaatctctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaaccacctctatcataggatcactatctacaactacttgtcaa |
4634395 |
T |
|
| Q |
411 |
caaaatttagtttgtataatctgcctactcaaannnnnnncagtttacattgaactattatcaatagtgtatttcataaacccatttttatcataaactg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634396 |
caaaatttagtttgtataatctgcctactcaaatttttttcaatttacattgaactattatcaatagtgtatttcataaacccatttttatcataaactg |
4634495 |
T |
|
| Q |
511 |
aactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacgcacatttnnn |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4634496 |
aactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccgtcatcaacacacctcaacatataggactcacacacattt-aa |
4634594 |
T |
|
| Q |
611 |
nnnnnnncaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattattttgttaaacatactctgat |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4634595 |
aaaaaaccaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattattttgttaaacatactctaat |
4634694 |
T |
|
| Q |
711 |
atcataggttaaatgcagaatttcaaatatgtgaataaattgaacctctttctattctccttccatttctctctctcatagtaaacaccttccagataaa |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4634695 |
atcataggttaaatgcagaatttcaaatatgtgaatcaattgaacctctttctattctccttccatttctctctctcatagtaaacaccttccagataaa |
4634794 |
T |
|
| Q |
811 |
ggactgaaatcacttatggactaaccctatttatcttgtnnnnnnnttgttccaaaggaaaaatgagcaaattgatga |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
4634795 |
ggactgaaatcacttatggactaaccctatttatcttgtaaaaaaaatgttccaaaggaaaaatgagcaaattaatga |
4634872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 739 - 823
Target Start/End: Original strand, 16692571 - 16692655
Alignment:
| Q |
739 |
atgtgaataaattgaacctctttctattctccttccatttctctctctcatagtaaacaccttccagataaaggactgaaatcac |
823 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
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|
| T |
16692571 |
atgtgaatcaattgaacctctttctattgtccttccatttctctctctcatagtcaacaccttctggataaacgactgaaatcac |
16692655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 660335 - 660741
Alignment:
| Q |
16 |
acatcaactatggtttttgagccggcagcggtacttagcctaattgtttacatcaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
660335 |
acatcaaccatggtttttgagccggcagcgctacttagcctaattgtttacaacaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
660434 |
T |
|
| Q |
116 |
gaatatatcacacaccctttgtctctagcaagcagaagcnnnnnnnnnntcccagctttacacaatgtatttaacttgtagcttcttcacttgctataac |
215 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
660435 |
gaatatatgatacaccccttgtctctagcaagcagaagc--aaaaaaaatcccagcttt--acaatgtatttagcttttagcttcttcacttgctataac |
660530 |
T |
|
| Q |
216 |
caatccttgtatgcactttacatttcaaataacctgcaaaaatgacaataaatgccttaccacaaatttacaattacagataaactgaacatttaaaatc |
315 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| | |
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|
| T |
660531 |
caatccttgtatgcactttacatttaagataacctgcagaaatgacaataaatgctttaccacaaatttacaattacagataaattgagcatttaaaaac |
660630 |
T |
|
| Q |
316 |
tctggaaaatgaactcttacccaatagcatagtcagaaatccaagccactcaaacaacctctatcataggatcactatctacaactacttgtcgacaaaa |
415 |
Q |
| |
|
| |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||| |||||| |
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|
| T |
660631 |
t----------aactcttacccaatggcatattcagaaatccaagccactcaaaccacct-tatcacaggatcactatctacaactacctgtcaacaaaa |
660719 |
T |
|
| Q |
416 |
tttagtttgtataatctgccta |
437 |
Q |
| |
|
||| ||| ||||||||| |||| |
|
|
| T |
660720 |
tttggttggtataatcttccta |
660741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 501 - 741
Target Start/End: Complemental strand, 21838357 - 21838116
Alignment:
| Q |
501 |
tcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacg |
600 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21838357 |
tcataaactcaactaaagcatattcaaacccaactctaattctcacaatatacttttgatttcttccttcatcaacacacctcaacatataggactcaca |
21838258 |
T |
|
| Q |
601 |
cacatttnnnnnnnnnnc-aatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattattttgttaaa |
699 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21838257 |
cacatttaaaaaaaaaaccaatatataaggcaaccaagtttcatatcctaatcaaccaagccaagacaaactatgccctgtaatttattattttgttaaa |
21838158 |
T |
|
| Q |
700 |
catactctgatatcataggttaaatgcagaatttcaaatatg |
741 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21838157 |
catactctaatatcataggttaaatgcagaatttcaaatatg |
21838116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 621 - 739
Target Start/End: Complemental strand, 17732998 - 17732872
Alignment:
| Q |
621 |
tatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt--------gttaaacatactctgatat |
712 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| || |||| | || |
|
|
| T |
17732998 |
tatataaggcacccaagttttatatcctaatcaaccaagccaagacaaactattccctgtaattttttttttttttttttggttaagcaagctctaaaat |
17732899 |
T |
|
| Q |
713 |
cataggttaaatgcagaatttcaaata |
739 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
17732898 |
cataggttaaatgcagaatctcaaata |
17732872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 643 - 693
Target Start/End: Complemental strand, 7762169 - 7762119
Alignment:
| Q |
643 |
tatcctaatcaaccaagccaagacaaactattccctgtaatttattatttt |
693 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||| |||| |||| |
|
|
| T |
7762169 |
tatcctaatcagccaagccaagacaaactattctctataatatattttttt |
7762119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 688
Target Start/End: Original strand, 22761944 - 22761989
Alignment:
| Q |
643 |
tatcctaatcaaccaagccaagacaaactattccctgtaatttatt |
688 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
22761944 |
tatcctaaacagccaagccaagacaaaatattccctataatttatt |
22761989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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