View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_low_2 (Length: 355)
Name: NF9882_low_2
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 8891506 - 8891223
Alignment:
| Q |
19 |
atagggcctttcacaagaagaaatccttgaatgcccaattgcatgcgcctttaagaaacctttaaagcttgaaaactatgacagaacaaatgattctaaa |
118 |
Q |
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| T |
8891506 |
atagggcctttcacaagaagaaatccttgaatgcccaattgcatgcgcctttaagaaacctttaaagcttgaaaactatgacggaacgaatgattctaaa |
8891407 |
T |
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| Q |
119 |
gaacacattgatactttccttgactatcactagggaagg-gagcagtgaagtgtaagctttttgtattaaccatgaagggggcggagatgacgtggttca |
217 |
Q |
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| T |
8891406 |
gaacacattgatactttccttgactatcactagggaagacgagcagtgaagtgtaagctttttgtattaaccatgaagggagcggagatgacgtggttca |
8891307 |
T |
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| Q |
218 |
aaggacttaaagataactccattgactcttagagagaactctgtgaagaatttacttcccattttactacaagaaggaaacaac |
301 |
Q |
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| T |
8891306 |
aaggacttaaagataactccattgactcttagagagaactctgtgaagaatttacttcccattttactacaagaaggaaacaac |
8891223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 8891214 - 8891182
Alignment:
| Q |
314 |
tggtagtgttaaacgccattgataggtctctgc |
346 |
Q |
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| T |
8891214 |
tggtagtgttaaacgccattgataggtttctgc |
8891182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 158 - 301
Target Start/End: Original strand, 13183424 - 13183567
Alignment:
| Q |
158 |
gagcagtgaagtgtaagctttttgtattaaccatgaagggggcggagatgacgtggttcaaaggacttaaagataactccattgactcttagagagaact |
257 |
Q |
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| T |
13183424 |
gagcagtgaagtgcaagctcttcgttttgaccttgaagggggcgacaatgacctggttcaaaggacttgaagacaactgcattgacacttggagagaatt |
13183523 |
T |
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| Q |
258 |
ctgtgaagaatttacttcccattttactacaagaaggaaacaac |
301 |
Q |
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| T |
13183524 |
atgtgaaaaatttacttcccatttaactacaagaaggaaacaac |
13183567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 17505047 - 17504950
Alignment:
| Q |
172 |
aagctttttgtattaaccatgaagggggcggagatgacgtggttcaaaggacttaaagataactccattgactcttagagagaactctgtgaagaatt |
269 |
Q |
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| T |
17505047 |
aagcttttcgtattgaccttgaagggggttgcgatgacctcgtttaaaggacatgaagacaactgcatttactcttggaggaaactctgtgaagaatt |
17504950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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