View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9882_low_4 (Length: 330)

Name: NF9882_low_4
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9882_low_4
NF9882_low_4
[»] chr5 (1 HSPs)
chr5 (19-314)||(43091546-43091841)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 43091546 - 43091841
Alignment:
Q  19 aacaaaatcaaagaaatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43091546 aacaaaatcaaagaaatgaagaaaagaatatctatcacaatttgaccatagctgtcatgcatgtgtagaatagtttttatctacaccgacacaattatag 43091645  T
Q  119 aaccaaagcaccaataaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcatcatcagcagctttctgatca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43091646 aaccaaagcaccaataaacaaactgaaaaataccataatgaatctcaacccttgatttaatccattaactccattttcattatcagcagctttctgatca 43091745  T
Q  219 tcagaatctgcatctgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttcttcttcttggctttactctctgct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43091746 tcagaatctgcatctgcatctggtccatctgccggtgagtctgcatcctcatccgccgccggcgccgccttcttcttcttggctttactctttgct 43091841  T

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