View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9882_low_7 (Length: 247)
Name: NF9882_low_7
Description: NF9882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9882_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 39947101 - 39947331
Alignment:
| Q |
17 |
attttctacattacatctttcaattaagggaagaaaattaatggacacatctttccttttgtgtgaagaagaccacactttcctccttatgcacaaaaat |
116 |
Q |
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| T |
39947101 |
attttctacattacatctttcaattaagggaagaaaattaatggacacatctttccttttgtgtgaagaagaccacactttcctccttatgcacaacaat |
39947200 |
T |
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| Q |
117 |
gatcacaatgaaaatattaacaattccaagtatgaagaaaaggaacatattgagtatttgtttcaacttgaaaaaacagaatctatgtccttcaattatt |
216 |
Q |
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| T |
39947201 |
gatcacaatgaaaatattaacaattccaagtatgaagaaaaggaacatattgagtatttgtttcaacttgaaaaaacagaatctatgtccttcaattatt |
39947300 |
T |
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| Q |
217 |
gctccaactcaaccataggccttgtccattt |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
39947301 |
gctccaactcaaccataggccttgtccattt |
39947331 |
T |
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