View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_high_12 (Length: 266)
Name: NF9883_high_12
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 3724084 - 3723885
Alignment:
| Q |
46 |
cttccaacatgagaagtttcaacacactatagacttgtttactagattaaaatatttcatatctctatcctctattcctttcactcatgaagtacgggta |
145 |
Q |
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| T |
3724084 |
cttccaacatgagaagtttcaacacactatagacttgtttactagattaaaatatttcatatctctatcctctgttcctttctctcatgaagtacgggta |
3723985 |
T |
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| Q |
146 |
ttatgctcggtagtgaaatatgtctagtactctagttttttcaactgagacttgttggagaagacaagataaaaaggatatgcaatgatcacttctacaa |
245 |
Q |
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| T |
3723984 |
ttatgctcggtagtgaaatatgtctagtactctagttttttcaactgagacttgttggagaagacaagataaaaaggatatgcaatgatcacttctacaa |
3723885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3724179 - 3724130
Alignment:
| Q |
1 |
agaacacttgatcttaaaagaatgacatatcatgaaaaacctatgcttcc |
50 |
Q |
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| T |
3724179 |
agaacacttgatcttaaaagaatgacatatcatgaaaaacctatgcttcc |
3724130 |
T |
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