View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_high_13 (Length: 249)

Name: NF9883_high_13
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_high_13
NF9883_high_13
[»] chr6 (2 HSPs)
chr6 (1-192)||(6765515-6765706)
chr6 (9-185)||(6679848-6680024)
[»] chr3 (2 HSPs)
chr3 (9-185)||(49881832-49882011)
chr3 (28-185)||(46522285-46522445)
[»] chr5 (4 HSPs)
chr5 (9-185)||(6162072-6162252)
chr5 (18-185)||(36847707-36847877)
chr5 (112-185)||(36859362-36859435)
chr5 (9-92)||(36858966-36859049)
[»] scaffold0299 (1 HSPs)
scaffold0299 (12-104)||(13660-13752)
[»] chr1 (1 HSPs)
chr1 (121-183)||(18135855-18135917)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6765515 - 6765706
Alignment:
Q  1 cgtagcggcacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6765515 cgtagcggcacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatataatatataatcat 6765614  T
Q  101 caccnnnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgatataagaag 192  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6765615 cacctttttttggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgatataagaag 6765706  T

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Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 6680024 - 6679848
Alignment:
Q  9 cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcaccnnnn 108  Q
    |||||||||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||        
T  6680024 cacataaggagaaagtaagactgaccagtggcgtagcttatcattcttcggagtcttttgctctttgggatggcaatataatatataatcatcacctttt 6679925  T
Q  109 nnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6679924 tttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata 6679848  T

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Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 49882011 - 49881832
Alignment:
Q  9 cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---n 105  Q
    ||||| ||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||        
T  49882011 cacatcaggagaaagaaagactgaccaacggcgtagcttatcattcttcggagtcttttgctcttcaggatgacaatatagtatataatcatcccctttt 49881912  T
Q  106 nnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
          ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||||||||    
T  49881911 cttgaaggagcacaggcccatatgtagcaagttgagaaaccccgtttcttacaaaaatcaaggtatccaatctgatgata 49881832  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 46522445 - 46522285
Alignment:
Q  28 actgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---nnnnnnnggagcacaggccc 124  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||||||| ||          |||||||||||||    
T  46522445 actgaccaccggcgtagcttatcattcttcggagtcttttgctctttggggtggcaatatagtatataatcatccccttttcttgaaggagcacaggccc 46522346  T
Q  125 atatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
    |||||||||||||   |||||||||||  |||||||||||||| ||| |||||||||||||    
T  46522345 atatgtagcaagtcaggaaacccctttttttacaaaaatcaaggtatccaatctgatgata 46522285  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 6162072 - 6162252
Alignment:
Q  9 cacataaggagaaa-ataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc--- 104  Q
    ||||||| |||||| | ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||       
T  6162072 cacataaagagaaacaaaagactgaccagcggcgcagcttatcattcttcggagtcttttgctcttcgggatggcaatatagtatataatcatccccttt 6162171  T
Q  105 nnnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
           ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||| |||||||||||||    
T  6162172 ctttgaaggagcacaggcccgtatgtagcaagttgagaaaccccttttgttacaaaaatcaaggtatccaatctgatgata 6162252  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 36847707 - 36847877
Alignment:
Q  18 agaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---nnnnnnngga 114  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||| ||          |||    
T  36847707 agaaaaaaagactgaccaacggcgtagcttatcattctttggagttttttgctcttcgggatggcaatatagtatataatcatcccctttttctgaagga 36847806  T
Q  115 gcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
    ||||||| ||||||||||||||||||||||||  ||| ||| ||||||||||| ||| |||||||||||||    
T  36847807 gcacaggaccatatgtagcaagttgagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgata 36847877  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 36859362 - 36859435
Alignment:
Q  112 ggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata 185  Q
    |||||||| |||||||||||||||||||||||||| | || ||| ||||||||||| ||| |||||||||||||    
T  36859362 ggagcacatgcccatatgtagcaagttgagaaaccacctttcttgcaaaaatcaaggtatccaatctgatgata 36859435  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 36858966 - 36859049
Alignment:
Q  9 cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtat 92  Q
    |||||||| |||||  |||| |||||| || ||||| |||||| |||||||||| |||||||||||| |||| |||||||||||    
T  36858966 cacataagaagaaagaaagattgaccaacgacgtagcttatcactcttcggagttttttgctcttcgggatggcaatatagtat 36859049  T

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Target: scaffold0299 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 13752 - 13660
Alignment:
Q  12 ataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc 104  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||| ||||    
T  13752 ataaggagaaagtaagactgaccagcggcgtagcttatcattcttcggagtcttttgcacttcgggatggcaatataatatataatcaccacc 13660  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 18135917 - 18135855
Alignment:
Q  121 gcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatga 183  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  18135917 gcccacatgtagcaagttgagaaaccccttttcttataaaaatcaaggtatccaatctgatga 18135855  T

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