View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_high_14 (Length: 245)
Name: NF9883_high_14
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_high_14 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38121808 - 38121574
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121808 |
tgaacacatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
38121709 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaa |
200 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121708 |
acttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaa |
38121609 |
T |
|
| Q |
201 |
tggttgttgttcacggccttcaaggtttcgcctct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
38121608 |
tggttgttgttcacggccttcaaggtttcgcctct |
38121574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38608315 - 38608549
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||| |
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| T |
38608315 |
tgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtc |
38608414 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaa |
200 |
Q |
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|
|||||||| ||||||||| |||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38608415 |
acttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaa |
38608514 |
T |
|
| Q |
201 |
tggttgttgttcacggccttcaaggtttcgcctct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
38608515 |
tggttgttgttcacggccttcaaggtttcgtctct |
38608549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38793098 - 38793332
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||| |
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| T |
38793098 |
tgaacacatcgttccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtc |
38793197 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaa |
200 |
Q |
| |
|
|||||||| ||||||||| |||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38793198 |
acttccgattcgattcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaa |
38793297 |
T |
|
| Q |
201 |
tggttgttgttcacggccttcaaggtttcgcctct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
38793298 |
tggttgttgttcacggccttcaaggtttcgtctct |
38793332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 28731382 - 28731148
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
28731382 |
tgaacacatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtc |
28731283 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28731282 |
acttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaa |
28731183 |
T |
|
| Q |
201 |
tggttgttgttcacggccttcaaggtttcgcctct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
28731182 |
tggttgttgttcacggccttcaaggtttcgcctct |
28731148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31529336 - 31529202
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31529336 |
tgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
31529237 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccgg |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
31529236 |
acttccgagtcgattcatccgaacaacacttccgg |
31529202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 51801404 - 51801270
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
51801404 |
tgaacacatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtc |
51801305 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttccgg |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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| T |
51801304 |
acttccgattcgattcatccgaacaacacttccgg |
51801270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34875884 - 34876015
Alignment:
| Q |
1 |
tgaacacatagttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
34875884 |
tgaacacatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatc |
34875983 |
T |
|
| Q |
101 |
acttccgagtcgattcatccgaacaacacttc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
34875984 |
acttccgagtcgattcatccgaacaacacttc |
34876015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 34183 - 34112
Alignment:
| Q |
158 |
ggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttc |
229 |
Q |
| |
|
||||| || ||||| || ||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| |
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| T |
34183 |
ggaggggtggagatcacgcaacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttc |
34112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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