View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_high_3 (Length: 400)
Name: NF9883_high_3
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 4281321 - 4280943
Alignment:
| Q |
19 |
gaagaatgagcttttggcatccctctcctccattgtgccttcagggaattgatcggcggcaaatgtttgtacgcacggcttgtgcccgccatcaccgaca |
118 |
Q |
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| T |
4281321 |
gaagaatgagcttttggcatccctctcctccattgtgccttcagggaattgatcggcggcaaatgtttgtacgcacggcttgtgcccgccatcaccgaca |
4281222 |
T |
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| Q |
119 |
gacaacgcgtaaagcgcgatgaagaacagcttcttgtttttccataccgagactgatagtgtcaacaaaatcatgccctgcatatgtgacaatagaacat |
218 |
Q |
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| T |
4281221 |
gacaacgcgtaaagcgcgatgaagaacagcttcttgtttttccataccgagactgatagtgtcaacaaaatcatgccctgcatatgtgacaatagaacat |
4281122 |
T |
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| Q |
219 |
tgtaatgttttaacatgtttaaaggaaattgtacatcaatttattatatttgaaaactttatgnnnnnnnctaacaaatgaattcaaaataaatctatga |
318 |
Q |
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| T |
4281121 |
tgtaatgttttaacatgtttaaaggaaattgtacatcaagttattatatttgcaaactttatgtttttttctaacaaatgaattcaaaataaatctatga |
4281022 |
T |
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| Q |
319 |
aagttgagaaagacctaaatttggatcatagtagcaagtggactgccccgaactaatcagtttatgcaacaccaaactc |
397 |
Q |
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| T |
4281021 |
aagttgagaaagacctaaatttggatcatagtagcaagtggactgccccgaactaatcagtttatgcaactgcaaactc |
4280943 |
T |
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