View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_1 (Length: 713)
Name: NF9883_low_1
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Complemental strand, 36675794 - 36675229
Alignment:
| Q |
17 |
ataaacatgatatatattaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675794 |
ataaacatgatatatattaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacg |
36675695 |
T |
|
| Q |
117 |
tttgttaacagtgtgaagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaggactttgagcctcttttta |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36675694 |
tttgttaacagtgtgaagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctcttttta |
36675595 |
T |
|
| Q |
217 |
cggtcagaatatatgagaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675594 |
cggtcagaatatatgagaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattg |
36675495 |
T |
|
| Q |
317 |
gcaacccgtagagagtccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675494 |
gcaacccgtagagagtccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaa |
36675395 |
T |
|
| Q |
417 |
tgttggcctgcataattaaggacatgaaggaaaaaattaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagattta |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
36675394 |
tgttggcctgcataattaaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagattta |
36675295 |
T |
|
| Q |
517 |
gaaataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36675294 |
gaaataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36675229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Complemental strand, 36685876 - 36685311
Alignment:
| Q |
17 |
ataaacatgatatatattaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685876 |
ataaacatgatatatattaagtactaaccataatagacaaaggtgaagcatacatgccaatattaaatagcatgcatatggtcccaacaacagcagaacg |
36685777 |
T |
|
| Q |
117 |
tttgttaacagtgtgaagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaggactttgagcctcttttta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36685776 |
tttgttaacagtgtgaagcatagtcaatgaaacaaatgagagaaggaaaatgaaaataagctccaatagtaaaccaagaaagactttgagcctcttttta |
36685677 |
T |
|
| Q |
217 |
cggtcagaatatatgagaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685676 |
cggtcagaatatatgagaaagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattg |
36685577 |
T |
|
| Q |
317 |
gcaacccgtagagagtccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685576 |
gcaacccgtagagagtccaaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaa |
36685477 |
T |
|
| Q |
417 |
tgttggcctgcataattaaggacatgaaggaaaaaattaacaacaaatgttagtattgttaatttttacgttaaaattgaaaaatgcgggaagagattta |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
36685476 |
tgttggcctgcataattaaggacatgaaggaaaaaattaacaacaaatgttagtattgttattttttaggttaaaattgaaaaatgcgggaagagattta |
36685377 |
T |
|
| Q |
517 |
gaaataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685376 |
gaaataatcttacactggagacaagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36685311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 36675179 - 36675117
Alignment:
| Q |
632 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
698 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatg |
36675117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 235 - 426
Target Start/End: Original strand, 42224268 - 42224459
Alignment:
| Q |
235 |
aagagtgtgatatagatgatctcaaccacacatcctgcaccattgatggtcaccacaaggaaactgtgagggtgcaccattggcaacccgtagagagtcc |
334 |
Q |
| |
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||||| |||| ||| |||||||||| |||||| |||| || |||||||| ||||| || | |||| ||||||||||| |||| ||||| || |||| |
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| T |
42224268 |
aagagcgtgacatatatgatctcaatcacacaacctgagccgttgatggttaccacgagcacgctgtccgggtgcaccataggcagaccgtatagtgtcc |
42224367 |
T |
|
| Q |
335 |
aaaccatgcagttcatcaacgtggctaggtatggtacgggtgagtattgttccactgatcctttcttgcatatcccaacaaatgttggcctg |
426 |
Q |
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| ||||||||||| | | || |||||||||||| | |||||| |||| ||||| ||||||||||| |||||| ||| ||| ||||||||| |
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| T |
42224368 |
ataccatgcagttaacaagtgttgctaggtatggtgctggtgagaattgctccacagatcctttcttccatatcgcaataaaagttggcctg |
42224459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 25991738 - 25991706
Alignment:
| Q |
458 |
aacaaatgttagtattgttaatttttacgttaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
25991738 |
aacaaatgttagtattgttaatttttacgttaa |
25991706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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