View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_10 (Length: 310)

Name: NF9883_low_10
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_10
NF9883_low_10
[»] chr4 (4 HSPs)
chr4 (87-276)||(36013214-36013405)
chr4 (87-261)||(47335749-47335928)
chr4 (90-265)||(39869575-39869755)
chr4 (112-198)||(55499060-55499146)
[»] chr6 (3 HSPs)
chr6 (87-304)||(16765779-16766005)
chr6 (127-199)||(9453727-9453800)
chr6 (20-52)||(1053327-1053359)
[»] chr3 (1 HSPs)
chr3 (195-262)||(31598212-31598279)
[»] chr2 (1 HSPs)
chr2 (112-198)||(16044066-16044152)
[»] chr5 (1 HSPs)
chr5 (136-191)||(17766669-17766725)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 36013214 - 36013405
Alignment:
Q  87 acggttagattaaagaaaaatacaaattttatggtggtatgtccatactatatcatccatcaacattctctcacttccat--cccccactcatgcactca 184  Q
    ||||||||||||||||| || |||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  36013214 acggttagattaaagaagaacacaaattttatgatggtatgtccagaccatatcatccatcaacattctctctcttccattccccccactcatgcactca 36013313  T
Q  185 accaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgag 276  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36013314 accaccaccaccacactattcatctttcctctcaatcttagttttcaacacacagaagaacacaaattcactactgagttggaaaaactgag 36013405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 47335749 - 47335928
Alignment:
Q  87 acggttagattaaagaaaaatacaaattttatggtggtatgtccatactatatcatccatcaacattctctcacttccat--cccccactcatgcactca 184  Q
    ||||||||||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||||||    
T  47335749 acggttagattaaagaagaacacaaattttataatggtatgtccatactatatcatccatcaacattatctctcttccattccccccactcatgcactca 47335848  T
Q  185 ---accaccaccaccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactga 261  Q
       |||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| || |||||    
T  47335849 accaccaccaccaccacactattcatctttcctctcaatcttagttttcaacgcacagaagaacacaaatttaccactga 47335928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 90 - 265
Target Start/End: Original strand, 39869575 - 39869755
Alignment:
Q  90 gttagattaaagaaaaatacaaattttatggtggta-tgtccatactatatcatccatcaacattctctcacttccat--cccccactcatgcactcaac 186  Q
    |||||||||||||| || |||||||||||| ||||| |||| ||||||||||||||||||||||  |||| ||||||   ||||||||||||||||||||    
T  39869575 gttagattaaagaagaacacaaattttatgatggtaatgtctatactatatcatccatcaacatcatctctcttccacaccccccactcatgcactcaac 39869674  T
Q  187 caccaccaccac---actattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttg 265  Q
    ||||||||||||   |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  39869675 caccaccaccaccacactattcatcttcct-ctcaatcttagttttcaacacacagaagaacacaaattcactaatgagttg 39869755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 55499060 - 55499146
Alignment:
Q  112 attttatggtggtatgtccatactatatcatccatcaacattctctcacttccatcccccactcatgcactcaaccaccaccaccac 198  Q
    |||||||  |||| || ||| |||||||||| ||||||||||||||| | ||||| || |||||||||||  | | |||||||||||    
T  55499060 attttataatggtctgcccacactatatcattcatcaacattctctctcctccattcctcactcatgcacctacctaccaccaccac 55499146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 87 - 304
Target Start/End: Complemental strand, 16766005 - 16765779
Alignment:
Q  87 acggttagattaaagaaaaatacaaattttatggtggtatgtccatactatat----catccatcaacattctctcacttccat--cccccactcatgca 180  Q
    ||||||||||||||||| || |||||||||||| | |||||||||||||||||    |||||||||||||| |||| |||||||  ||||||||||||||    
T  16766005 acggttagattaaagaagaacacaaattttatgatagtatgtccatactatatacatcatccatcaacattatctctcttccattccccccactcatgca 16765906  T
Q  181 ctcaaccaccaccaccac---actattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgagttggaaaaattgagt 277  Q
    ||||||||||||||||||   |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||| |||||    
T  16765905 ctcaaccaccaccaccaccacactattcatctttcctctcaatcttagttttcaacacacaaaagaacacaaattcatcactgagttggaaaaactgagt 16765806  T
Q  278 tgtgctttagaaaccatcaacaccaaa 304  Q
    ||||||||||||||||||| |||||||    
T  16765805 tgtgctttagaaaccatcaccaccaaa 16765779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 9453800 - 9453727
Alignment:
Q  127 gtccatactatatcatccatcaacattctctcacttccat-cccccactcatgcactcaaccaccaccaccaca 199  Q
    ||||| || ||||||||| ||  ||||||||| | ||||| |||||||||||||||||| ||||||||||||||    
T  9453800 gtccacaccatatcatccttctgcattctctctcctccattcccccactcatgcactcacccaccaccaccaca 9453727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 1053327 - 1053359
Alignment:
Q  20 aatgcatggtgcaaaagttaactctcttgtgca 52  Q
    |||||||||||||||||||||||||||||||||    
T  1053327 aatgcatggtgcaaaagttaactctcttgtgca 1053359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 31598212 - 31598279
Alignment:
Q  195 ccacactattcatctttcttctcaatcttagttttcaacatacagaagaacacaaattcactactgag 262  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31598212 ccacactattcatctttcctctcaatcttagttttcaacacacagaagaacacaaattcactactgag 31598279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 16044152 - 16044066
Alignment:
Q  112 attttatggtggtatgtccatactatatcatccatcaacattctctcacttccatcccccactcatgcactcaaccaccaccaccac 198  Q
    |||||||  |||| || ||| |||||||||||||||||||||||||| | ||||| || ||||||||||| || |  ||||||||||    
T  16044152 attttataatggtctgcccacactatatcatccatcaacattctctctcctccattcctcactcatgcacccatcggccaccaccac 16044066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 17766669 - 17766725
Alignment:
Q  136 atatcatccatcaacattctctcacttccatcc-cccactcatgcactcaaccacca 191  Q
    ||||||||||| | ||||||||| | ||||||| |||||||||||||||| ||||||    
T  17766669 atatcatccattatcattctctctcctccatcctcccactcatgcactcacccacca 17766725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University