View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_11 (Length: 297)
Name: NF9883_low_11
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 96 - 278
Target Start/End: Complemental strand, 4235142 - 4234962
Alignment:
| Q |
96 |
gttgtttagcaacttgtactttcgattaacaagtaaagaaacattaaaattgaatgacatggctaattataattggtttgtgttaaaagagtgttagaag |
195 |
Q |
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| T |
4235142 |
gttgtttagcaacttgtactttcgattaacaagtaaagaaacattaaaattgaatgacatggctaattataattggt--gtgttaaaagagtgttagaag |
4235045 |
T |
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| Q |
196 |
gtgtgtccctagccttactctattgagatttatggtggaccatatgcaattttgattcacttaatatatttggtgttaaaaac |
278 |
Q |
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| T |
4235044 |
gtgtgtccctagccctactctattgagatttatggtggaccatatgcaattttgattcacctaatacatttggtgttaaaaac |
4234962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 4235221 - 4235176
Alignment:
| Q |
17 |
aagaagccctggaacaatggggagaaagagaaccgacgatttacag |
62 |
Q |
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| T |
4235221 |
aagaatccctggaacaatggggagaaagagaaccgacgatttacag |
4235176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 297
Target Start/End: Original strand, 36512614 - 36512816
Alignment:
| Q |
96 |
gttgtttag-caacttgtactttcgattaacaagtaaagaaacattaaaattgaatgacatggctaattataattggtttgtgttaaaagagtgttagaa |
194 |
Q |
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| T |
36512614 |
gttgtttaggcaacttgtactttcgattaacccgtaaagaaaaattaaaattgaatgacatggctaattatgattcgtgtgtgttaaaagagtgctagaa |
36512713 |
T |
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| Q |
195 |
ggtgtgtccctagccttactctattgagatttatggtggaccatatgcaattttgattcacttaatatatttggtgttaaaaactaacggagaagactat |
294 |
Q |
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| T |
36512714 |
gatgtgtccctagccctactctattgagatttatgatggactatatgcaattttgattcacctaatacatttggtgttaaaaattaaaggagaagactat |
36512813 |
T |
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| Q |
295 |
att |
297 |
Q |
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||| |
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| T |
36512814 |
att |
36512816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 36512539 - 36512584
Alignment:
| Q |
17 |
aagaagccctggaacaatggggagaaagagaaccgacgatttacag |
62 |
Q |
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| T |
36512539 |
aagaagccctggaacaatggggagaaagagaaccgacgatttacag |
36512584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 4548545 - 4548505
Alignment:
| Q |
149 |
atgacatggctaattataattggtttgtgttaaaagagtgt |
189 |
Q |
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| T |
4548545 |
atgacatggcttattattattggtgtgtgttaaaagagtgt |
4548505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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