View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_12 (Length: 279)
Name: NF9883_low_12
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_12 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 38121861 - 38122111
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
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||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121861 |
agggagcgaaaatggtgaaaggaccggtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
38121960 |
T |
|
| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121961 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttca |
38122060 |
T |
|
| Q |
217 |
gtggcggtgacctcgtcaccggaaagcatggcggtgaagaagattgcgaag |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122061 |
gtggcggtgacctcgtcaccggaaagcatggcggtgaagaagattgcgaag |
38122111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 38608262 - 38608012
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
| |
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||||||| ||||| || ||||||| |||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38608262 |
agggagcgaaaatggtagaaggaccggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgag |
38608163 |
T |
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| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttca |
216 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||||||||| ||||| ||||| |||||| |
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| T |
38608162 |
atgagacaagatcggtggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttca |
38608063 |
T |
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| Q |
217 |
gtggcggtgacctcgtcaccggaaagcatggcggtgaagaagattgcgaag |
267 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
38608062 |
gtggcggtgaccttgtcaccggaaagcatgacggtgaagaagattgcgaag |
38608012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 38793045 - 38792795
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
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||||||| ||||| || ||||||| |||||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38793045 |
agggagcgaaaatggtagaaggaccggtccaagcagaggaagcggtggttgcggcatcggagagcgacggagcggcggttgcaagctcgtgaaatccgag |
38792946 |
T |
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| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttca |
216 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||||||||| ||||| ||||| |||||| |
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| T |
38792945 |
atgagacaagatcggtggaagtaatgtggtgtgagagaagaacgaatgttcttgaagatcatgtggaggtagcggtgggattgaaggttcgaaaccttca |
38792846 |
T |
|
| Q |
217 |
gtggcggtgacctcgtcaccggaaagcatggcggtgaagaagattgcgaag |
267 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
38792845 |
gtggcggtgaccttgtcaccggaaagcatgacggtgaagaagattgcgaag |
38792795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 28731435 - 28731685
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
| |
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||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28731435 |
agggagcgaaaatggtgaaaggaccggtccaagcaagggaagtggtggttgcagcgtcagagagcgtaggagcggcggttgcaagctcgtgaaaaccgag |
28731534 |
T |
|
| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacgaatgttcttgaagatcgtgcggaggtggcggtgggaatgaagcttcgattccttca |
216 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
28731535 |
atgagacaagataggtggaagtaatgcagtgtgagagaagaacgaatgttcttgaagatcatgtggaggtggcggtgggaatgaagcttcgattccttca |
28731634 |
T |
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| Q |
217 |
gtggcggtgacctcgtcaccggaaagcatggcggtgaagaagattgcgaag |
267 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28731635 |
gtggcggtgacaacgtcaccggaaagcatggcggtgaagaagattgcgaag |
28731685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 50643856 - 50643827
Alignment:
| Q |
61 |
gtggttgcagcgtcggagagcgacggagcg |
90 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
50643856 |
gtggttgcagcgtcggagagcgacggagcg |
50643827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 51801457 - 51801601
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51801457 |
agggagcgaaaatagtgaaaggaccggtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
51801556 |
T |
|
| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacga |
161 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
51801557 |
atgagacaaaatcggtggaagtaatgcagtgtgagagaagaacga |
51801601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 31529389 - 31529533
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31529389 |
agggagcgaaaatagtgaaaggaccggtccaagcaggggaagtggtggttgcagcgtcggagagcgatggagcggcggttgcaagctcgtgaaaaccgag |
31529488 |
T |
|
| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacga |
161 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
31529489 |
atgagacaaaatcggtggaagtaatgcagtgtgagagaagaacga |
31529533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 34875831 - 34875687
Alignment:
| Q |
17 |
agggagcaaaaatagtgaaaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgag |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34875831 |
agggagcaaaaatagtgaaaggaccggtccaagcaggggaagtggtggttgcagcgtcggagagtgacggagcggcggttgcaagctcgtgaaaaccgag |
34875732 |
T |
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| Q |
117 |
atgagacaagatcggtggaagtaatgcagtttgagagaagaacga |
161 |
Q |
| |
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||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
34875731 |
atgagacaaaatcggtggatgtaatgcagtgtgagagaagaacga |
34875687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 34399 - 34534
Alignment:
| Q |
35 |
aaggaccagtccaagcaggggaagtggtggttgcagcgtcggagagcgacggagcggcggttgcaagctcgtgaaaaccgagatgagacaagatcggtgg |
134 |
Q |
| |
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||||||| ||||| |||| || || ||||| || | ||| ||||| || ||||| || || || |||||||| || |||||||| ||||||||||| || |
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| T |
34399 |
aaggaccggtccaggcagaggcagcggtggccgcggagtcagagagtgaaggagccgccgtggctagctcgtggaagccgagatgggacaagatcggggg |
34498 |
T |
|
| Q |
135 |
aagtaatgcagtttgagagaagaacgaatgttcttg |
170 |
Q |
| |
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|| | ||| || |||||||||||||| |||||||| |
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| T |
34499 |
gaggagtgctgtgtgagagaagaacgagtgttcttg |
34534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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