View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_15 (Length: 249)
Name: NF9883_low_15
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_15 |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6765515 - 6765706
Alignment:
| Q |
1 |
cgtagcggcacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6765515 |
cgtagcggcacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatataatatataatcat |
6765614 |
T |
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| Q |
101 |
caccnnnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgatataagaag |
192 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6765615 |
cacctttttttggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgatataagaag |
6765706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 6680024 - 6679848
Alignment:
| Q |
9 |
cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcaccnnnn |
108 |
Q |
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|||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||| |
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| T |
6680024 |
cacataaggagaaagtaagactgaccagtggcgtagcttatcattcttcggagtcttttgctctttgggatggcaatataatatataatcatcacctttt |
6679925 |
T |
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| Q |
109 |
nnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6679924 |
tttggaggacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata |
6679848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 49882011 - 49881832
Alignment:
| Q |
9 |
cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---n |
105 |
Q |
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||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
49882011 |
cacatcaggagaaagaaagactgaccaacggcgtagcttatcattcttcggagtcttttgctcttcaggatgacaatatagtatataatcatcccctttt |
49881912 |
T |
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| Q |
106 |
nnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |
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| T |
49881911 |
cttgaaggagcacaggcccatatgtagcaagttgagaaaccccgtttcttacaaaaatcaaggtatccaatctgatgata |
49881832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 46522445 - 46522285
Alignment:
| Q |
28 |
actgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---nnnnnnnggagcacaggccc |
124 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||||||| || ||||||||||||| |
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| T |
46522445 |
actgaccaccggcgtagcttatcattcttcggagtcttttgctctttggggtggcaatatagtatataatcatccccttttcttgaaggagcacaggccc |
46522346 |
T |
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| Q |
125 |
atatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
46522345 |
atatgtagcaagtcaggaaacccctttttttacaaaaatcaaggtatccaatctgatgata |
46522285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 6162072 - 6162252
Alignment:
| Q |
9 |
cacataaggagaaa-ataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc--- |
104 |
Q |
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||||||| |||||| | ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
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| T |
6162072 |
cacataaagagaaacaaaagactgaccagcggcgcagcttatcattcttcggagtcttttgctcttcgggatggcaatatagtatataatcatccccttt |
6162171 |
T |
|
| Q |
105 |
nnnnnnnggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
6162172 |
ctttgaaggagcacaggcccgtatgtagcaagttgagaaaccccttttgttacaaaaatcaaggtatccaatctgatgata |
6162252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 36847707 - 36847877
Alignment:
| Q |
18 |
agaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc---nnnnnnngga |
114 |
Q |
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|||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||| || ||| |
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| T |
36847707 |
agaaaaaaagactgaccaacggcgtagcttatcattctttggagttttttgctcttcgggatggcaatatagtatataatcatcccctttttctgaagga |
36847806 |
T |
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| Q |
115 |
gcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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||||||| |||||||||||||||||||||||| ||| ||| ||||||||||| ||| ||||||||||||| |
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| T |
36847807 |
gcacaggaccatatgtagcaagttgagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgata |
36847877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 36859362 - 36859435
Alignment:
| Q |
112 |
ggagcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatgata |
185 |
Q |
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| T |
36859362 |
ggagcacatgcccatatgtagcaagttgagaaaccacctttcttgcaaaaatcaaggtatccaatctgatgata |
36859435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 36858966 - 36859049
Alignment:
| Q |
9 |
cacataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtat |
92 |
Q |
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|||||||| ||||| |||| |||||| || ||||| |||||| |||||||||| |||||||||||| |||| ||||||||||| |
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| T |
36858966 |
cacataagaagaaagaaagattgaccaacgacgtagcttatcactcttcggagttttttgctcttcgggatggcaatatagtat |
36859049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 13752 - 13660
Alignment:
| Q |
12 |
ataaggagaaaataagactgaccatcggcgtagtttatcattcttcggagtcttttgctcttcgagatgacaatatagtatataatcatcacc |
104 |
Q |
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||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||| |||| |
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| T |
13752 |
ataaggagaaagtaagactgaccagcggcgtagcttatcattcttcggagtcttttgcacttcgggatggcaatataatatataatcaccacc |
13660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 18135917 - 18135855
Alignment:
| Q |
121 |
gcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatattcaatctgatga |
183 |
Q |
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| T |
18135917 |
gcccacatgtagcaagttgagaaaccccttttcttataaaaatcaaggtatccaatctgatga |
18135855 |
T |
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