View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_18 (Length: 242)

Name: NF9883_low_18
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_18
NF9883_low_18
[»] chr2 (13 HSPs)
chr2 (17-238)||(41569122-41569330)
chr2 (192-238)||(670360-670406)
chr2 (192-238)||(17779519-17779565)
chr2 (196-238)||(28679453-28679495)
chr2 (192-238)||(29051543-29051589)
chr2 (192-238)||(31389684-31389730)
chr2 (192-239)||(7552693-7552740)
chr2 (195-238)||(18177077-18177120)
chr2 (192-238)||(433987-434033)
chr2 (191-238)||(2464137-2464184)
chr2 (196-239)||(6941075-6941118)
chr2 (196-239)||(29684552-29684595)
chr2 (196-242)||(42223844-42223890)
[»] chr8 (23 HSPs)
chr8 (192-238)||(13971257-13971303)
chr8 (192-238)||(1633778-1633824)
chr8 (192-238)||(32843830-32843876)
chr8 (192-238)||(36110275-36110321)
chr8 (189-238)||(1871500-1871549)
chr8 (191-238)||(7955894-7955941)
chr8 (192-238)||(16966922-16966968)
chr8 (192-238)||(34591401-34591447)
chr8 (189-238)||(7586048-7586097)
chr8 (192-233)||(30135902-30135943)
chr8 (193-238)||(37783860-37783905)
chr8 (195-239)||(29867191-29867235)
chr8 (192-239)||(33589119-33589166)
chr8 (189-239)||(7592986-7593036)
chr8 (192-238)||(11017942-11017988)
chr8 (196-238)||(18651497-18651539)
chr8 (192-238)||(32847574-32847620)
chr8 (198-239)||(11657895-11657936)
chr8 (190-230)||(6968119-6968159)
chr8 (192-239)||(7478915-7478962)
chr8 (196-238)||(35564426-35564468)
chr8 (192-221)||(9208219-9208248)
chr8 (190-218)||(5864350-5864378)
[»] chr7 (17 HSPs)
chr7 (189-242)||(29162861-29162914)
chr7 (192-238)||(32815305-32815351)
chr7 (184-238)||(47078132-47078186)
chr7 (191-238)||(23048287-23048334)
chr7 (191-238)||(39231615-39231662)
chr7 (192-238)||(37808652-37808698)
chr7 (195-238)||(13163056-13163099)
chr7 (192-238)||(19785967-19786013)
chr7 (192-238)||(26041208-26041254)
chr7 (196-238)||(29002743-29002785)
chr7 (192-238)||(41026182-41026228)
chr7 (192-238)||(41666810-41666856)
chr7 (189-238)||(41402645-41402694)
chr7 (195-238)||(39137289-39137332)
chr7 (192-238)||(21023005-21023051)
chr7 (191-221)||(34757357-34757387)
chr7 (201-238)||(46148128-46148165)
[»] chr4 (32 HSPs)
chr4 (189-238)||(14451530-14451579)
chr4 (190-238)||(53152207-53152255)
chr4 (192-239)||(37066123-37066170)
chr4 (192-238)||(5932046-5932092)
chr4 (192-238)||(9118752-9118798)
chr4 (189-239)||(17476012-17476062)
chr4 (192-238)||(41486031-41486077)
chr4 (192-238)||(47965874-47965920)
chr4 (191-238)||(30079983-30080030)
chr4 (191-238)||(33899213-33899260)
chr4 (191-238)||(50272960-50273007)
chr4 (192-238)||(12112764-12112810)
chr4 (192-238)||(23822136-23822182)
chr4 (192-238)||(51194406-51194452)
chr4 (192-238)||(54669472-54669518)
chr4 (190-239)||(21260434-21260483)
chr4 (190-238)||(51746357-51746405)
chr4 (192-239)||(2256219-2256266)
chr4 (195-238)||(25317957-25318000)
chr4 (195-238)||(26206868-26206911)
chr4 (195-242)||(41082450-41082497)
chr4 (192-239)||(42959408-42959455)
chr4 (191-242)||(43326230-43326281)
chr4 (196-238)||(624203-624245)
chr4 (192-242)||(6141666-6141716)
chr4 (196-238)||(13389342-13389384)
chr4 (196-238)||(31076190-31076232)
chr4 (192-238)||(35820308-35820354)
chr4 (196-238)||(55601600-55601642)
chr4 (192-221)||(40609769-40609798)
chr4 (195-227)||(6494535-6494567)
chr4 (190-238)||(41389759-41389807)
[»] chr3 (25 HSPs)
chr3 (186-238)||(54195477-54195529)
chr3 (187-238)||(36121958-36122009)
chr3 (192-238)||(10206861-10206907)
chr3 (192-238)||(39670985-39671031)
chr3 (192-238)||(44677372-44677418)
chr3 (190-238)||(37508384-37508432)
chr3 (192-239)||(35201428-35201475)
chr3 (189-239)||(22371327-22371377)
chr3 (192-242)||(33375998-33376048)
chr3 (189-238)||(51973253-51973302)
chr3 (190-238)||(26996452-26996500)
chr3 (195-238)||(28419105-28419148)
chr3 (195-238)||(32767813-32767856)
chr3 (196-239)||(55013138-55013181)
chr3 (192-238)||(11633750-11633796)
chr3 (192-238)||(43905110-43905156)
chr3 (192-238)||(54773641-54773687)
chr3 (191-239)||(390945-390993)
chr3 (200-239)||(30909165-30909204)
chr3 (195-238)||(46982794-46982837)
chr3 (192-238)||(21195779-21195825)
chr3 (192-238)||(29633960-29634006)
chr3 (196-238)||(30862965-30863007)
chr3 (196-238)||(49417711-49417753)
chr3 (189-238)||(54028079-54028128)
[»] chr1 (27 HSPs)
chr1 (190-238)||(20565004-20565052)
chr1 (192-238)||(26837589-26837635)
chr1 (189-238)||(3603248-3603297)
chr1 (190-238)||(26585765-26585813)
chr1 (196-239)||(36494587-36494630)
chr1 (191-238)||(51191925-51191972)
chr1 (192-238)||(7128255-7128301)
chr1 (192-238)||(9008362-9008408)
chr1 (192-238)||(21340658-21340704)
chr1 (189-238)||(37178841-37178890)
chr1 (198-238)||(756993-757033)
chr1 (195-238)||(33024462-33024505)
chr1 (195-238)||(38303579-38303622)
chr1 (192-238)||(1852839-1852885)
chr1 (192-238)||(4514342-4514388)
chr1 (192-238)||(8411606-8411652)
chr1 (184-238)||(47214344-47214398)
chr1 (196-238)||(51286260-51286302)
chr1 (198-239)||(3024644-3024685)
chr1 (192-241)||(16987071-16987120)
chr1 (191-239)||(36779156-36779204)
chr1 (192-239)||(902774-902821)
chr1 (195-238)||(1790645-1790688)
chr1 (191-230)||(29586978-29587017)
chr1 (191-238)||(34008316-34008363)
chr1 (189-219)||(21486218-21486248)
chr1 (189-217)||(21093243-21093271)
[»] chr5 (15 HSPs)
chr5 (192-239)||(35098893-35098940)
chr5 (195-239)||(8267711-8267755)
chr5 (192-239)||(16437452-16437499)
chr5 (190-237)||(21064112-21064159)
chr5 (192-238)||(4430824-4430870)
chr5 (196-236)||(17402814-17402854)
chr5 (190-242)||(23126227-23126279)
chr5 (191-238)||(39088756-39088803)
chr5 (196-238)||(2224928-2224970)
chr5 (192-238)||(2688874-2688920)
chr5 (196-238)||(42267482-42267524)
chr5 (190-238)||(5042385-5042433)
chr5 (190-238)||(33620745-33620793)
chr5 (190-239)||(39628925-39628974)
chr5 (195-242)||(9226433-9226481)
[»] scaffold0471 (1 HSPs)
scaffold0471 (192-238)||(144-190)
[»] chr6 (11 HSPs)
chr6 (192-238)||(5327479-5327525)
chr6 (193-239)||(14986633-14986679)
chr6 (195-239)||(34504156-34504200)
chr6 (192-235)||(3610849-3610892)
chr6 (196-238)||(2075343-2075385)
chr6 (196-238)||(22341067-22341109)
chr6 (196-239)||(30036686-30036729)
chr6 (196-242)||(2777209-2777255)
chr6 (192-237)||(11547417-11547462)
chr6 (197-239)||(335197-335239)
chr6 (196-238)||(30152422-30152464)
[»] scaffold0449 (1 HSPs)
scaffold0449 (190-238)||(9340-9388)
[»] scaffold0687 (1 HSPs)
scaffold0687 (189-239)||(2334-2384)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 41569122 - 41569330
Alignment:
Q  17 acaaggatgaagttttttgtttattgcagtgcagcaatagccaataatatatgttgtaatttatgataatgatttattgagtccatatgcaaagtgttgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||     |||||    
T  41569122 acaaggatgaagttttttgtttattgcagtgcagcaatagccaataatatatgttgtagtttatgataatgattttttgagtccatatgc-----gttgt 41569216  T
Q  117 caaatgagcaaaagatttaagattacttctttgacacgattattcgatgattgagtagtagatattgaattgaatgaggagtgttatttgaacaaccaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||      || |||| |||||||||||||||||    
T  41569217 caaatgagcaaaagatttaagattacttctttgacacgattat---atgattgagtagtagatattgaaa-----gatgagtattatttgaacaaccaat 41569308  T
Q  217 ttggtaacaacttatttgacaa 238  Q
    ||| | | ||||||||||||||    
T  41569309 ttgatgataacttatttgacaa 41569330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 670360 - 670406
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  670360 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 670406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 17779565 - 17779519
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17779565 gaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 17779519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 28679495 - 28679453
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  28679495 agtgttatttgaacaaccaatttggtcacaacttatttgacaa 28679453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 29051543 - 29051589
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  29051543 gaggagtgttatttgaacaaccaatttggtgataacttatttgacaa 29051589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 31389730 - 31389684
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  31389730 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 31389684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 7552740 - 7552693
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  7552740 gaggagtgttatttgaacaatcaatttggtgacaatttatttgacaat 7552693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 18177120 - 18177077
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  18177120 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 18177077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 434033 - 433987
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||    
T  434033 gaggagtgttatttgaacaatcaattttgtgacaacttatttgacaa 433987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 2464137 - 2464184
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||||    
T  2464137 tgaggagtgttatttaaacaaccaatttgatgaaaacttatttgacaa 2464184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 6941118 - 6941075
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  6941118 agtgttatttgaacaaccaatttgatgataacttatttgacaat 6941075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 29684552 - 29684595
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||| ||||||| | |||||||||||||||||    
T  29684552 agtgttatttgaacaatcaatttgatgacaacttatttgacaat 29684595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 42223844 - 42223890
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    |||||||||||||||||||||||||| | || |||||| ||||||||    
T  42223844 agtgttatttgaacaaccaatttggtgataatttatttaacaattat 42223890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 13971303 - 13971257
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13971303 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 13971257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 1633778 - 1633824
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  1633778 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 1633824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 32843830 - 32843876
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  32843830 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 32843876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 36110321 - 36110275
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36110321 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 36110275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 1871500 - 1871549
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  1871500 aatgaggagtgttatttgaacaaccaatttgattacaacttatttgacaa 1871549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 7955894 - 7955941
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7955894 tgaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 7955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 16966968 - 16966922
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  16966968 gaggagtgttatttgaacaaccaatttggtgaaaacttatttgacaa 16966922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 34591447 - 34591401
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34591447 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 34591401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 7586048 - 7586097
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  7586048 aatgaggagtgttatttgaacaaccaatttcatgacaacttatttgacaa 7586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 30135902 - 30135943
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttattt 233  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  30135902 gaggagtgttatttgaacaaccaatttggtgacaacttattt 30135943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 37783860 - 37783905
Alignment:
Q  193 aggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  37783860 aggagtgttatttgatcaaccaatttggtgacaacttatttgacaa 37783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 29867191 - 29867235
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  29867191 gagtgttatatgaacaactaatttggtaacaacttatttgacaat 29867235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 33589119 - 33589166
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  33589119 gaggattgttatttgaacaatcaatttggtgacaacttatttgacaat 33589166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 7593036 - 7592986
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||||||||||    
T  7593036 aatgatgagtgttatttgaacaatcaatatggtgacaacttatttgacaat 7592986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 11017988 - 11017942
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||||    
T  11017988 gaggagtgttatttgaacaattaatttggtgacaacttatttgacaa 11017942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 18651539 - 18651497
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  18651539 agtgttatttaaacaaccaatttagtaacaacttatttgacaa 18651497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 32847574 - 32847620
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||    
T  32847574 gaggagtgttatttgaacaatcaatttggtgataacttatttgacaa 32847620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 11657895 - 11657936
Alignment:
Q  198 tgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  11657895 tgttatttgaacaaccaatttgctgacaacttatttgacaat 11657936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 6968119 - 6968159
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaactta 230  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  6968119 atgaggagtgttatttgaacaatcaatttggtgacaactta 6968159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 7478962 - 7478915
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||| |||||| | ||||| |||||||||||    
T  7478962 gaggagtgttatttgaacaactaatttgttgacaacctatttgacaat 7478915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 35564468 - 35564426
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| ||||| || ||||||||||||||||    
T  35564468 agtgttatttgaacaactaatttagtgacaacttatttgacaa 35564426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 9208248 - 9208219
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggt 221  Q
    ||||||||||||||||||||||||||||||    
T  9208248 gaggagtgttatttgaacaaccaatttggt 9208219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 5864378 - 5864350
Alignment:
Q  190 atgaggagtgttatttgaacaaccaattt 218  Q
    |||||||||||||||||||||||||||||    
T  5864378 atgaggagtgttatttgaacaaccaattt 5864350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 29162861 - 29162914
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29162861 aatgatgagtgttatttgaacaaccaatttggtgacaacttatttgacaattat 29162914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 32815351 - 32815305
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  32815351 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 32815305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 47078132 - 47078186
Alignment:
Q  184 aattgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  47078132 aattgaaagagtagtgttatttgaacaaccaattttgtaacaacttatttgacaa 47078186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 23048287 - 23048334
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23048287 tgaggagtgttatttgaacaaccaatttggtgacaacttattttacaa 23048334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 39231615 - 39231662
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  39231615 tgaggagtgttatttgaacaactaatttggtgacaacttatttgacaa 39231662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 37808652 - 37808698
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  37808652 gaggagtgttatttgaacaaccaatttggtgacaacgtatttgacaa 37808698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 13163099 - 13163056
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  13163099 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 13163056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 19785967 - 19786013
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||    
T  19785967 gaggagtgttatttgaacaatcaatttgatgacaacttatttgacaa 19786013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 26041208 - 26041254
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  26041208 gaggagtattatttgaacaatcaatttggtgacaacttatttgacaa 26041254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 29002785 - 29002743
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||| ||| ||||||||||||    
T  29002785 agtgttatttgaacaaccaatttggtgacagcttatttgacaa 29002743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 41026228 - 41026182
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||    
T  41026228 gaggagtgttatttgaacaactaatttggtgacaatttatttgacaa 41026182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 41666810 - 41666856
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | || |||||||||||    
T  41666810 gaggagtgttatttgaacaaccaatttggtgataatttatttgacaa 41666856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 41402694 - 41402645
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  41402694 aatgagaagtgttatttgaacaactaatttggtgacaacttatttaacaa 41402645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 39137332 - 39137289
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||| | | ||||||||||||||    
T  39137332 gagtgttatttgaacaaccaatttgatgataacttatttgacaa 39137289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 21023005 - 21023051
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||| | |||| |||||||||||    
T  21023005 gaggagtgttatttgaacaatcaatttgatgacaatttatttgacaa 21023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 34757357 - 34757387
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggt 221  Q
    |||||||||||||||||||||||||||||||    
T  34757357 tgaggagtgttatttgaacaaccaatttggt 34757387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 46148165 - 46148128
Alignment:
Q  201 tatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  46148165 tatttgaacaaccaatttgatgacaacttatttgacaa 46148128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 14451579 - 14451530
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14451579 aatgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 14451530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 53152207 - 53152255
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53152207 atgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 53152255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 37066170 - 37066123
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  37066170 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 37066123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 5932046 - 5932092
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5932046 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 5932092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 9118752 - 9118798
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  9118752 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 9118798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 17476062 - 17476012
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  17476062 aatgaggagtgttatttgaacaatcaatttggtgacaacttatttgacaat 17476012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 41486031 - 41486077
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  41486031 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 41486077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 47965920 - 47965874
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  47965920 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 47965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 30080030 - 30079983
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30080030 tgaggagtgttatttgaacaaccaatttggtgaaaacttatttgacaa 30079983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 33899213 - 33899260
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||    
T  33899213 tgagaagtgttatttgaacaaccaatttggtgacaacttatttgacaa 33899260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 50272960 - 50273007
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  50272960 tgaggagtattatttgaacaaccaatttggtgacaacttatttgacaa 50273007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 12112810 - 12112764
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  12112810 gaggagtgatatttgaacaaccaatttggtgacaacttatttgacaa 12112764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 23822136 - 23822182
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  23822136 gaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 23822182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 51194452 - 51194406
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  51194452 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 51194406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 54669472 - 54669518
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||    
T  54669472 gaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 54669518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 21260483 - 21260434
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  21260483 atgaggagtgttttttgaacaaccaatttggtgacaatttatttgacaat 21260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 51746405 - 51746357
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  51746405 atgaggagtgttatttgaacaattaatttggtgacaacttatttgacaa 51746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 2256219 - 2256266
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  2256219 gaggagtgttatttgaacaactaatttggtgacaacttattttacaat 2256266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 25317957 - 25318000
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  25317957 gagtgttatttgaacaaccaatttggtgataacttatttgacaa 25318000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 26206868 - 26206911
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  26206868 gagtgttatttgaacaactaatttggtgacaacttatttgacaa 26206911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 41082497 - 41082450
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  41082497 gagtgttatttgaacaaccaatttgatggcaacttatttgacaattat 41082450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 42959455 - 42959408
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||    
T  42959455 gaggagtgttatttgaacaaccaatttagtgataacttatttgacaat 42959408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 43326230 - 43326281
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    |||||||||||||||||| || ||||||||| | ||||||||||||||||||    
T  43326230 tgaggagtgttatttgaataaacaatttggtgataacttatttgacaattat 43326281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 624203 - 624245
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  624203 agtgttatttgaacaactaatttggtgacaacttatttgacaa 624245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 6141666 - 6141716
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    ||||||||||||||||||||||||||| || || | |||||||||||||||    
T  6141666 gaggagtgttatttgaacaaccaatttagtgactatttatttgacaattat 6141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 13389342 - 13389384
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  13389342 agtgttatttgaacaatcaatttggtcacaacttatttgacaa 13389384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 31076232 - 31076190
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  31076232 agtgttatttaaacaaccaatttggtgacaacttatttgacaa 31076190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 35820354 - 35820308
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||  |||||||| | ||||||||||||||    
T  35820354 gaggagtgttatttgaacaattaatttggtgataacttatttgacaa 35820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 55601600 - 55601642
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||| |||||| || ||||||||||||||||    
T  55601600 agtgttatttgaacaatcaattttgtgacaacttatttgacaa 55601642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 40609798 - 40609769
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggt 221  Q
    ||||||||||||||||||||||||||||||    
T  40609798 gaggagtgttatttgaacaaccaatttggt 40609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 6494535 - 6494567
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaac 227  Q
    ||||||||||||||||||||||||||| |||||    
T  6494535 gagtgttatttgaacaaccaatttggtgacaac 6494567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 41389759 - 41389807
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||| ||||||||||||||||||||||| || || |||||||| ||||    
T  41389759 atgagaagtgttatttgaacaaccaatttcgtgactacttattttacaa 41389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 54195529 - 54195477
Alignment:
Q  186 ttgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54195529 ttgattgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 54195477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 36122009 - 36121958
Alignment:
Q  187 tgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36122009 tgaaagaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 36121958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 10206861 - 10206907
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  10206861 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 10206907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 39670985 - 39671031
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  39670985 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 39671031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 44677372 - 44677418
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  44677372 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 44677418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37508384 - 37508432
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  37508384 atgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 37508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 35201428 - 35201475
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  35201428 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaat 35201475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 22371377 - 22371327
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  22371377 aatgaggagtgttatttgaacaactaatttggtgacaatttatttgacaat 22371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 33376048 - 33375998
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  33376048 gaggagtgttatttgaacaatcaatttggtgacaacttatttgaaaattat 33375998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 51973253 - 51973302
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  51973253 aatgaggagtgttatttgaacaactaatttggtgacaatttatttgacaa 51973302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 26996500 - 26996452
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  26996500 atgaggagtgttatttgaacaacaaatttggtgacaatttatttgacaa 26996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 28419105 - 28419148
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  28419105 gagtgttatttgaacaaccaatttggtgacaacttacttgacaa 28419148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 32767856 - 32767813
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  32767856 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 32767813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 55013181 - 55013138
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  55013181 agtgttatttgaacaaccaatttggtgacaatttatttgacaat 55013138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 11633796 - 11633750
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | || |||||||||||    
T  11633796 gaggagtgttatttgaacaaccaatttggtgataatttatttgacaa 11633750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 43905156 - 43905110
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||| || | ||||||||||||||    
T  43905156 gaggagtgttatttgaacaaccaatttagtgaaaacttatttgacaa 43905110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 54773641 - 54773687
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||    
T  54773641 gaggagtgttatatgaataaccaatttggtgacaacttatttgacaa 54773687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 390993 - 390945
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  390993 tgaggaatgttatttgaacaaccaagttgatgacaacttatttgacaat 390945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 30909204 - 30909165
Alignment:
Q  200 ttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  30909204 ttatttgaacaactaatttggtgacaacttatttgacaat 30909165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 46982794 - 46982837
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||| |||||||| |||| |||||||||||    
T  46982794 gagtgttatttgaacaactaatttggtgacaatttatttgacaa 46982837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 21195779 - 21195825
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||| |||||||||||| ||||||| |||||| |||||||||||    
T  21195779 gaggagtattatttgaacaatcaatttgataacaatttatttgacaa 21195825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 29633960 - 29634006
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| |||||||||||||||||||||| || |||| |||||||||||    
T  29633960 gaggggtgttatttgaacaaccaatttagtgacaatttatttgacaa 29634006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 30862965 - 30863007
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||| ||||||||| |||| |||||||||||    
T  30862965 agtgttatttgaacaatcaatttggtgacaatttatttgacaa 30863007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 49417753 - 49417711
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||| || ||||||||||| ||||    
T  49417753 agtgttatttgaacaaccaattttgtgacaacttatttaacaa 49417711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 54028128 - 54028079
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| || |||||| || |||||||||| |||||    
T  54028128 aatgaggagtgttatttgaagaatcaatttagtgacaacttattggacaa 54028079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 20565004 - 20565052
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20565004 atgaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 20565052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 26837635 - 26837589
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  26837635 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 26837589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 3603297 - 3603248
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  3603297 aatgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 3603248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 26585765 - 26585813
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  26585765 atgaggagtgttatttgaacaaccaatttgatgacaacttatttgacaa 26585813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 36494630 - 36494587
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  36494630 agtgttatttgaacaaccaatttggtgacaacttatttgacaat 36494587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 51191972 - 51191925
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  51191972 tgaggggtgttatttgaacaaccaatttggtgacaacttatttgacaa 51191925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 7128301 - 7128255
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  7128301 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 7128255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 9008408 - 9008362
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9008408 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 9008362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 21340704 - 21340658
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21340704 gaggagtgttatttgaacaatcaatttggtgacaacttatttgacaa 21340658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 37178890 - 37178841
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  37178890 aatgaggagttttatttgaacaatcaatttggtgacaacttatttgacaa 37178841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 757033 - 756993
Alignment:
Q  198 tgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  757033 tgttatttgaacaaccaatttggtgacaacttatttgacaa 756993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 33024462 - 33024505
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33024462 gagtgttatttgaacaatcaatttggtgacaacttatttgacaa 33024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 38303579 - 38303622
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  38303579 gagtgttatttgaacaaccaatttggtgataacttatttgacaa 38303622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 1852839 - 1852885
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||    
T  1852839 gaggagtgttatttgaataaccaatttgatgacaacttatttgacaa 1852885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 4514342 - 4514388
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||    
T  4514342 gaggagtgttatttgaacaatcaatttagtgacaacttatttgacaa 4514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 8411606 - 8411652
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  8411606 gaggtgtgttatttgaacaaccaatttggtgacaacttatttaacaa 8411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 47214398 - 47214344
Alignment:
Q  184 aattgaatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||| |||  |||||||||||||||||||||| || ||||||||||||||||    
T  47214398 aattgaaagagtggtgttatttgaacaaccaattttgtgacaacttatttgacaa 47214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 51286260 - 51286302
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  51286260 agtgttatttgaacaaccaattttgtgacaacttatttgacaa 51286302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 3024644 - 3024685
Alignment:
Q  198 tgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  3024644 tgttatttgaacaactaatttggtgacaacttatttgacaat 3024685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 16987120 - 16987071
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaatta 241  Q
    ||||||||||||||||| ||  |||||||| |||||||||||||||||||    
T  16987120 gaggagtgttatttgaagaattaatttggtgacaacttatttgacaatta 16987071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 36779156 - 36779204
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||| ||||||||| | || ||||||||||||    
T  36779156 tgaggagtgttatttgaacaatcaatttggtgataatttatttgacaat 36779204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 902821 - 902774
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||||| | | | |||||||||||||    
T  902821 gaggagtgttatttgaacaaccaatttgatgatagcttatttgacaat 902774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 1790688 - 1790645
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||    
T  1790688 gagtgttatttgaataactaatttggtgacaacttatttgacaa 1790645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 29587017 - 29586978
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaactta 230  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  29587017 tgaggagtgctatttgaacaaccaatttggtgacaactta 29586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 34008363 - 34008316
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||||    
T  34008363 tgagtagtgttatttgaacaatcaattttgtgacaacttatttgacaa 34008316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 21486218 - 21486248
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttg 219  Q
    |||||||||||||||||||||||||||||||    
T  21486218 aatgaggagtgttatttgaacaaccaatttg 21486248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 21093243 - 21093271
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatt 217  Q
    |||||||||||||||||||||||||||||    
T  21093243 aatgaggagtgttatttgaacaaccaatt 21093271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 35098893 - 35098940
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35098893 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 35098940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 8267711 - 8267755
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  8267711 gagtgttatttgaacaaccaatttggtgacaacttatttgacaat 8267755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 16437452 - 16437499
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  16437452 gaggagtgttatttgaacaaccaatttggtgacaatttatttgacaat 16437499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 21064112 - 21064159
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgaca 237  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21064112 atgaggagtgttatttgaacaatcaatttggtgacaacttatttgaca 21064159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 4430824 - 4430870
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  4430824 gaggagtgctatttgaacaaccaatttggtgacaacttatttgacaa 4430870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 17402814 - 17402854
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgac 236  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  17402814 agtgttatttgaacaaccaatttggtgacaacttatttgac 17402854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 23126227 - 23126279
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    |||| |||||||||||||||||| |||||| | ||||||||||||||||||||    
T  23126227 atgatgagtgttatttgaacaactaatttgatgacaacttatttgacaattat 23126279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 39088756 - 39088803
Alignment:
Q  191 tgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||    
T  39088756 tgagtagtgttatttgaacaaccaatttagtgacaacttatttgacaa 39088803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 2224970 - 2224928
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  2224970 agtgttatttgaacaaccaatttgatgacaacttatttgacaa 2224928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 2688874 - 2688920
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  2688874 gaggattgttatttgaacaaccaatttggtgacaaattatttgacaa 2688920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 42267524 - 42267482
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  42267524 agtgttatttgaacaaccaatttgatgacaacttatttgacaa 42267482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 5042433 - 5042385
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||| |||||||||||||||| ||||||||| | ||||||||||||||    
T  5042433 atgagaagtgttatttgaacaatcaatttggtgataacttatttgacaa 5042385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 33620793 - 33620745
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    ||||||| ||||||||||||||||||||| || ||||||||||| ||||    
T  33620793 atgaggaatgttatttgaacaaccaatttagtgacaacttatttaacaa 33620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 39628974 - 39628925
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||  ||||| || |||| ||||||||||||    
T  39628974 atgaggagtgttatttgaacaaataattttgtgacaatttatttgacaat 39628925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 9226481 - 9226433
Alignment:
Q  195 gagtgttatttgaacaaccaatttgg-taacaacttatttgacaattat 242  Q
    |||||||||||||||||||||||||| | ||||||| | ||||||||||    
T  9226481 gagtgttatttgaacaaccaatttggttgacaacttttgtgacaattat 9226433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 190 - 144
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  190 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 5327479 - 5327525
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  5327479 gaggagtgttatttgaacaaccaatttggtgacaacttatttgacaa 5327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 14986633 - 14986679
Alignment:
Q  193 aggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  14986633 aggagtgttatttgaacaaccaatttggtgacaacttatttgacaat 14986679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 34504200 - 34504156
Alignment:
Q  195 gagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  34504200 gagtgttatttgaacaaccaatttggtgacaacttatttgacaat 34504156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 3610849 - 3610892
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttga 235  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  3610849 gaggagtgttatttgaacaaccaatttggtgacaacttatttga 3610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 2075343 - 2075385
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  2075343 agtgttatttgaacaaccaatttggtgacaacttatttgacaa 2075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 22341067 - 22341109
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  22341067 agtgttatttgaacaaccaatttggtgacaacttatttgacaa 22341109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 30036686 - 30036729
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  30036686 agtgttatttgaacaatcaatttggtgacaacttatttgacaat 30036729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 2777209 - 2777255
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaattat 242  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||    
T  2777209 agtgttatttgaacaatcaatttggtgataacttatttgacaattat 2777255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 11547417 - 11547462
Alignment:
Q  192 gaggagtgttatttgaacaaccaatttggtaacaacttatttgaca 237  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||    
T  11547417 gaggagtgttatttgaacaatcaatttggtgacaatttatttgaca 11547462  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 335239 - 335197
Alignment:
Q  197 gtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||||||||||||| |||||| || |||||||||||||||||    
T  335239 gtgttatttgaacaatcaatttagtgacaacttatttgacaat 335197  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 30152422 - 30152464
Alignment:
Q  196 agtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  30152422 agtgttatttgaacaatcaatttggtgataacttatttgacaa 30152464  T

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Target: scaffold0449 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 9388 - 9340
Alignment:
Q  190 atgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaa 238  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  9388 atgaagagtgttatttgaacaaccaatttgatcacaacttatttgacaa 9340  T

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Target: scaffold0687 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 2384 - 2334
Alignment:
Q  189 aatgaggagtgttatttgaacaaccaatttggtaacaacttatttgacaat 239  Q
    ||||| ||||||||||||||||| |||| |||| |||||||||||||||||    
T  2384 aatgatgagtgttatttgaacaatcaatatggtgacaacttatttgacaat 2334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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