View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_20 (Length: 229)

Name: NF9883_low_20
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_20
NF9883_low_20
[»] chr7 (1 HSPs)
chr7 (14-210)||(23205739-23205935)
[»] chr3 (3 HSPs)
chr3 (27-210)||(14031490-14031673)
chr3 (31-210)||(23426582-23426761)
chr3 (26-189)||(11587245-11587408)
[»] chr6 (2 HSPs)
chr6 (27-195)||(24891725-24891893)
chr6 (26-189)||(24988559-24988722)
[»] chr4 (2 HSPs)
chr4 (33-185)||(14193383-14193535)
chr4 (27-95)||(37972978-37973046)
[»] chr8 (2 HSPs)
chr8 (33-185)||(40730840-40730992)
chr8 (120-184)||(43234440-43234504)
[»] chr1 (1 HSPs)
chr1 (26-190)||(46055685-46055849)
[»] chr2 (1 HSPs)
chr2 (120-183)||(576525-576588)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 23205739 - 23205935
Alignment:
Q  14 caaaggctaaatgaaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtga 113  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23205739 caaaggctaaaagaaaattaagctcttaggaagcaggttaccatagcatcaattctaagcttgtctatgagatcaagaggaggagtttggtgctccgtga 23205838  T
Q  114 gggctgcattagacgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagatttcaaaatgatgggaagctat 210  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  23205839 gggttgcatttgacgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtatgaaagatttcaaagtggtgggaagctat 23205935  T

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Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 14031490 - 14031673
Alignment:
Q  27 aaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattaga 126  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  14031490 aaaattaagctcttaggaaataggttcccatagcatcaattctaagcttgtcaatgagatcaagaggaggggtttggtgctccgtgagggctgcatttga 14031589  T
Q  127 cgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagatttcaaaatgatgggaagctat 210  Q
    | ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||    
T  14031590 caaggctccaagcttggctaaaaaatctgcgcagtgatttccttctctaagagtgtgaaagatttcaaagtggtgtgaagctat 14031673  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 23426761 - 23426582
Alignment:
Q  31 ttaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattagacgag 130  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23426761 ttaagctcttaggaaataggttcccatagcgtcaattctaagcttgtcaatgagatcaagaggaggggtttggtgctccgtgagggctgcatttgacgag 23426662  T
Q  131 gctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagatttcaaaatgatgggaagctat 210  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||| || || ||||||||    
T  23426661 gctccaagcttggctaaaaaatctgcgcattggtttccttctctaagagtgtgagagattttaaagtggtgtgaagctat 23426582  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 11587245 - 11587408
Alignment:
Q  26 gaaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattag 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||   || ||||||||||||||||  | |||||||  ||| |||||||| |    
T  11587245 gaaaattaagctcttaggaagcaggttcccatagcatcaattttaagcttgcggatcagatcaagaggaggggcctcgtgctccaagagagctgcatttg 11587344  T
Q  126 acgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagat 189  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11587345 acgaggctccaagcttggctaaaaaatctgcgcaatggtttccttctctaagagtgtgaaagat 11587408  T

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Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 24891725 - 24891893
Alignment:
Q  27 aaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattaga 126  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||    
T  24891725 aaaattaagctcttaggaaataggttcccatagcatccattctaagcttgtccatgagatcaagaggaggggtttggtgctccgtaatggctgcatttga 24891824  T
Q  127 cgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagatttcaaa 195  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24891825 cgaggctccaagcttggctaaaaaatctgcgcagtggtttccttctctaagagtgtgaaagatttcaaa 24891893  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 24988559 - 24988722
Alignment:
Q  26 gaaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattag 125  Q
    |||||||||| ||| || || |||||||||  |||||||||| ||||| || | |||||||||||||||||||  ||||| |||  || || |||| | |    
T  24988559 gaaaattaagttctcagaaaacaggttcccgaagcatcaattttaagcatgccgatgagatcaagaggaggggactggtgttccaagaagggtgcagttg 24988658  T
Q  126 acgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagat 189  Q
    | | |||||||| ||||||||| || |||||||   | ||||||||||||||||||||||||||    
T  24988659 atgtggctccgatcttggctaagaagtctgcgccgcggtttccttctctaagagtgtgaaagat 24988722  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 14193535 - 14193383
Alignment:
Q  33 aagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattagacgaggc 132  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||  |  ||||||  ||  ||| |||| ||||| ||    
T  14193535 aagctcttaggaagcaagttcccatagcatcaattttaagcttgtcaatgagatcatgaggaggggactcatgctccaagaaagctacatttgacgaagc 14193436  T
Q  133 tccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaa 185  Q
    ||| |||||||| |  ||||  ||||| |||||||||||||| ||||||||||    
T  14193435 tccaagcttggccatgaaattggcgcagtgatttccttctcttagagtgtgaa 14193383  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 37972978 - 37973046
Alignment:
Q  27 aaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggag 95  Q
    ||||| |||||||||||||||| |||| |||||||||||||  || |||||| ||||||||| ||||||    
T  37972978 aaaatcaagctcttaggaagcaagttctcatagcatcaatttgaatcttgtcgatgagatcatgaggag 37973046  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 40730992 - 40730840
Alignment:
Q  33 aagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattagacgaggc 132  Q
    |||||||| |||| || ||||||||||||||| | ||||||  ||||||||||||| ||||||||| |   || |||  ||   |  |||||||||| |     
T  40730992 aagctcttgggaaacaagttcccatagcatcattcctaagcaagtctatgagatcatgaggaggggataaatgttccaagaaaccaacattagacgaagt 40730893  T
Q  133 tccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaa 185  Q
    ||| |||||||| || ||||| ||||| |||||||||||||||||||||||||    
T  40730892 tcctagcttggcgaagaaatcggcgcattgatttccttctctaagagtgtgaa 40730840  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 43234504 - 43234440
Alignment:
Q  120 cattagacgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtga 184  Q
    |||||||||| ||||| |||||| | || ||||| ||||  || |||||||||||||||||||||    
T  43234504 cattagacgaagctcctagcttgaccaagaaatcggcgctttgttttccttctctaagagtgtga 43234440  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 46055685 - 46055849
Alignment:
Q  26 gaaaattaagctcttaggaagcaggttcccatagcatcaattctaagcttgtctatgagatcaagaggaggggtttggtgctccgtgagggctgcattag 125  Q
    |||| ||||| ||| ||||| ||||||||   |||||||||| | ||| ||   ||||||||||||||||||   ||||| |||  || || |||| | |    
T  46055685 gaaacttaagttctcaggaaacaggttcctgaagcatcaatttttagcatgctgatgagatcaagaggagggtactggtgttccaagaagggtgcagttg 46055784  T
Q  126 acgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtgaaagatt 190  Q
    | | ||||||||| |||||| | || |||||||| || |||||||||||||||||||||||||||    
T  46055785 aagtggctccgagtttggctgagaagtctgcgcagtggtttccttctctaagagtgtgaaagatt 46055849  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 576588 - 576525
Alignment:
Q  120 cattagacgaggctccgagcttggctaaaaaatctgcgcaatgatttccttctctaagagtgtg 183  Q
    |||||||||| ||||  |||||||| || ||||| ||||| |||||||||||||| ||||||||    
T  576588 cattagacgaagctcatagcttggcgaagaaatcggcgcattgatttccttctcttagagtgtg 576525  T

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