View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_4 (Length: 380)
Name: NF9883_low_4
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 133 - 373
Target Start/End: Complemental strand, 3438397 - 3438157
Alignment:
| Q |
133 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaagcacatataactaaa |
232 |
Q |
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| T |
3438397 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaa |
3438298 |
T |
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| Q |
233 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
332 |
Q |
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| T |
3438297 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
3438198 |
T |
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| Q |
333 |
caacaagataatcagaaagctttttgtttatctttcccctt |
373 |
Q |
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| T |
3438197 |
caacaagataatcagaaagctttttgtttatctttcccctt |
3438157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 3438512 - 3438462
Alignment:
| Q |
18 |
agatccactcctagtttaggatagaaagaggatacgataataatgacaact |
68 |
Q |
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| T |
3438512 |
agatccactcctagtttaggatagaaagaggatacaataataatgacaact |
3438462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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