View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_5 (Length: 373)

Name: NF9883_low_5
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_5
NF9883_low_5
[»] chr4 (9 HSPs)
chr4 (68-366)||(39870008-39870304)
chr4 (68-366)||(36013696-36013991)
chr4 (68-366)||(47326540-47326828)
chr4 (68-366)||(47341336-47341624)
chr4 (81-142)||(55514149-55514210)
chr4 (215-296)||(55514254-55514335)
chr4 (5-51)||(55513878-55513924)
chr4 (95-142)||(39112499-39112546)
chr4 (332-366)||(55514359-55514393)
[»] chr3 (1 HSPs)
chr3 (74-366)||(31598544-31598833)
[»] chr6 (2 HSPs)
chr6 (68-268)||(16765351-16765550)
chr6 (260-366)||(16764934-16765040)
[»] chr5 (3 HSPs)
chr5 (231-302)||(9142120-9142191)
chr5 (81-166)||(9142226-9142307)
chr5 (1-39)||(9142573-9142611)
[»] chr8 (1 HSPs)
chr8 (328-366)||(35943085-35943123)
[»] chr2 (1 HSPs)
chr2 (332-366)||(15602825-15602859)
[»] chr7 (1 HSPs)
chr7 (329-366)||(6730159-6730196)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 39870008 - 39870304
Alignment:
Q  68 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  39870008 aactagatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtgaatttatgttgttt 39870106  T
Q  168 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 267  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  39870107 ctatgactgtgagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgtaaaaaagat 39870206  T
Q  268 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||       |||| |||||||||||||||||||| |||||| ||||||    
T  39870207 atggtatgtgtggtctattattaaatcagtgttcctctttaatctaactgttc-aaaaaacttctccatggtgggaaacaacttttctttcccatgcta 39870304  T

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Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 36013696 - 36013991
Alignment:
Q  68 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  36013696 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtgaatttgtgttgttt 36013794  T
Q  168 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 267  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  | ||||||||||||    
T  36013795 ctatgactgtgagcagtgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaag--actgtaaaaaagat 36013892  T
Q  268 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||       ||| |||||||||| ||||||||||| ||||| ||||||    
T  36013893 atggtatgtgtggtctatgattaaatcagtgttccactttaatctaactgttcaaaaaaactttcccatggtggtaaacaactttcatttcccatgcta 36013991  T

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Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 47326540 - 47326828
Alignment:
Q  68 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  47326540 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaatttgtgttgttt 47326638  T
Q  168 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 267  Q
    ||||||||||| || |||||||||||||||       ||| ||||||||||| |||||||| ||||||||||  ||| ||||||| | ||||||||||||    
T  47326639 ctatgactgtgggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagat 47326729  T
Q  268 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||| |||||||||||||||||||||||||||| ||||||    
T  47326730 atggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47326828  T

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Target: chr4; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 68 - 366
Target Start/End: Original strand, 47341336 - 47341624
Alignment:
Q  68 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  47341336 aactggatgttagtaaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagagg-aaaaatacttggtgtgaatttgtgttgttt 47341434  T
Q  168 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 267  Q
    ||||||||||| || |||||||||||||||       ||| ||||||||||| |||||||| ||||||||||  ||| ||||||| | ||||||||||||    
T  47341435 ctatgactgtgggcagtgaagaaaatggga-------ttcggtgatagtggatgtgggtgaaattcaatctc--gagattgaagacagtgtaaaaaagat 47341525  T
Q  268 atggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||| |||||||||||||||||||||||||||| ||||||    
T  47341526 atggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttcctttcccatgcta 47341624  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 55514149 - 55514210
Alignment:
Q  81 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 142  Q
    ||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  55514149 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 55514210  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 55514254 - 55514335
Alignment:
Q  215 gtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagatatggtatgtgtggtctatgattaaatcag 296  Q
    |||||||||||| || ||||||| |||||||||||||| || ||||| |||||||||| || || |||||||||||||||||    
T  55514254 gtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagtagtctatgattaaatcag 55514335  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 55513878 - 55513924
Alignment:
Q  5 tgtatcaataatatagatgaatcaaactccaataaatttccccaaat 51  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  55513878 tgtaccaataatatagatgaatcaaactccaataaatctccacaaat 55513924  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 39112546 - 39112499
Alignment:
Q  95 attagtttgaataggtcttattttaggaacaattgggagaggaaaaaa 142  Q
    ||||||||||||| || ||||||||| |||| ||||||||||||||||    
T  39112546 attagtttgaataagttttattttagaaacagttgggagaggaaaaaa 39112499  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 55514359 - 55514393
Alignment:
Q  332 cccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||||||| ||||||    
T  55514359 cccatggtgggaaacaactttcctttcccatgcta 55514393  T

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Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 74 - 366
Target Start/End: Original strand, 31598544 - 31598833
Alignment:
Q  74 atgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgtttctatga 173  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  31598544 atgttaataaataagtaagtaattattttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgtttctatga 31598642  T
Q  174 ctgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagatatggta 273  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||  |||||||||||||    
T  31598643 ctgtgagcaatgaagaaaatgggattcatccttccgtgatagtggatgtgggtgaaattcaatctcatgaggttgaagacagtgt--aaaagatatggta 31598740  T
Q  274 tgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||       ||| ||||||||||||||||||||| |||| | ||||||    
T  31598741 tgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaacttttcttttccatgcta 31598833  T

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Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 16765550 - 16765351
Alignment:
Q  68 aactagatgttagtaaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgttt 167  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  16765550 aactggatgttagtaaatcagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa-tacttggtgtcaatttgtgttgttt 16765452  T
Q  168 ctatgactgtgagcggtgaagaaaatgggattcatccttccgtgatagtggacgtgggtgagattcaatctcatgaggttgaagataatgtaaaaaagat 267  Q
    |||||| ||||||  |||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||    
T  16765451 ctatgattgtgagtagtgaagaaaatgggattcatcctttcatgatagtggatgtgggtgaaattcaatctcatgaggttgaagaaagtgtaaaaaagat 16765352  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 16765040 - 16764934
Alignment:
Q  260 aaaaagatatggtatgtgtggtctatgattaaatcagtgttcctttttaatctaactgttcnnnnnnncttccccatggtgggaaacaactttcctttcc 359  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||       ||||||||||||||||||||||||||||||||    
T  16765040 aaaaacatatggtatgtgtggtctatgattaaataagtgttcctctttaatctaattgttcaaaaaaacttccccatggtgggaaacaactttcctttcc 16764941  T
Q  360 tatgcta 366  Q
     ||||||    
T  16764940 catgcta 16764934  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 9142191 - 9142120
Alignment:
Q  231 ttcaatctcatgaggttgaagataatgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcc 302  Q
    ||||||| |||||||||||||| || ||||| |||||||||| || || |||||||||||||||||||||||    
T  9142191 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgggtagtctatgattaaatcagtgttcc 9142120  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 9142307 - 9142226
Alignment:
Q  81 taaataagtaagtaattagtttgaataggtcttattttaggaacaattgggagaggaaaaaataattggtgtgaatttgtgttgtt 166  Q
    ||||||| ||| ||||||||||||||| ||||| ||| |  ||||||||||||||||||||  |||| || |||||||||||||||    
T  9142307 taaataaataaataattagtttgaataagtcttttttga--aacaattgggagaggaaaaa--aattagtatgaatttgtgttgtt 9142226  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9142611 - 9142573
Alignment:
Q  1 catttgtatcaataatatagatgaatcaaactccaataa 39  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  9142611 catttgtaccaataatatagatgaatcaaactccaataa 9142573  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 366
Target Start/End: Complemental strand, 35943123 - 35943085
Alignment:
Q  328 cttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  35943123 cttccccatggtgggaaacaacttccctttcccatgcta 35943085  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 15602825 - 15602859
Alignment:
Q  332 cccatggtgggaaacaactttcctttcctatgcta 366  Q
    |||||||||||||||||||| ||||||||||||||    
T  15602825 cccatggtgggaaacaacttccctttcctatgcta 15602859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 6730159 - 6730196
Alignment:
Q  329 ttccccatggtgggaaacaactttcctttcctatgcta 366  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6730159 ttccccatggtgggaaacaacttccctttcccatgcta 6730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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