View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_6 (Length: 360)

Name: NF9883_low_6
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_6
NF9883_low_6
[»] chr5 (30 HSPs)
chr5 (20-212)||(10736861-10737053)
chr5 (20-215)||(4124754-4124950)
chr5 (110-216)||(10735760-10735866)
chr5 (27-217)||(1103898-1104088)
chr5 (38-215)||(35047417-35047593)
chr5 (41-216)||(13519470-13519649)
chr5 (110-215)||(41144531-41144636)
chr5 (132-217)||(28702565-28702650)
chr5 (134-216)||(35081474-35081556)
chr5 (112-223)||(4127268-4127379)
chr5 (20-127)||(9219262-9219369)
chr5 (110-216)||(11797546-11797652)
chr5 (131-216)||(1102615-1102700)
chr5 (216-284)||(1751314-1751382)
chr5 (216-284)||(11726675-11726743)
chr5 (216-284)||(37275963-37276031)
chr5 (20-107)||(8188126-8188213)
chr5 (216-284)||(10329807-10329875)
chr5 (221-284)||(37275315-37275378)
chr5 (102-216)||(41143237-41143351)
chr5 (27-96)||(5975870-5975939)
chr5 (38-217)||(11796565-11796743)
chr5 (109-215)||(42642022-42642128)
chr5 (220-277)||(35384182-35384239)
chr5 (30-121)||(10978212-10978303)
chr5 (237-277)||(30411519-30411559)
chr5 (38-109)||(1273190-1273261)
chr5 (158-201)||(42792962-42793005)
chr5 (20-97)||(224516-224593)
chr5 (27-152)||(36897998-36898125)
[»] chr7 (33 HSPs)
chr7 (39-212)||(43442705-43442878)
chr7 (27-217)||(10955841-10956031)
chr7 (40-217)||(666722-666899)
chr7 (132-214)||(10957189-10957271)
chr7 (19-215)||(26146629-26146825)
chr7 (132-216)||(26135638-26135722)
chr7 (110-216)||(669401-669507)
chr7 (38-178)||(29589211-29589351)
chr7 (110-214)||(43441345-43441449)
chr7 (110-218)||(2414744-2414848)
chr7 (38-192)||(35296759-35296913)
chr7 (216-284)||(1827908-1827976)
chr7 (110-178)||(35295734-35295802)
chr7 (55-171)||(44376646-44376762)
chr7 (55-171)||(44385513-44385629)
chr7 (216-284)||(47645442-47645510)
chr7 (216-284)||(33118651-33118719)
chr7 (38-215)||(41329411-41329588)
chr7 (20-97)||(17288168-17288245)
chr7 (38-215)||(32653461-32653638)
chr7 (41-177)||(3330728-3330864)
chr7 (20-107)||(28326316-28326403)
chr7 (139-217)||(8426928-8427006)
chr7 (220-277)||(29008730-29008787)
chr7 (20-97)||(41515109-41515186)
chr7 (240-284)||(12314005-12314049)
chr7 (228-284)||(40461270-40461326)
chr7 (110-178)||(44372764-44372832)
chr7 (110-178)||(44381620-44381688)
chr7 (41-97)||(45721713-45721769)
chr7 (216-284)||(44119143-44119215)
chr7 (68-109)||(43931840-43931881)
chr7 (156-185)||(44554825-44554854)
[»] chr4 (37 HSPs)
chr4 (40-218)||(26631162-26631340)
chr4 (38-212)||(36846501-36846674)
chr4 (27-215)||(35348795-35348983)
chr4 (27-215)||(39056423-39056611)
chr4 (38-216)||(1521126-1521313)
chr4 (132-217)||(35350143-35350228)
chr4 (38-178)||(44499925-44500065)
chr4 (110-215)||(26629789-26629894)
chr4 (132-216)||(39057802-39057886)
chr4 (110-215)||(1519809-1519914)
chr4 (67-216)||(8363359-8363508)
chr4 (216-284)||(42739684-42739752)
chr4 (101-211)||(37106254-37106364)
chr4 (38-216)||(52137423-52137601)
chr4 (116-202)||(26425784-26425870)
chr4 (216-284)||(1921164-1921232)
chr4 (216-284)||(22443835-22443903)
chr4 (40-216)||(26495119-26495295)
chr4 (20-107)||(46795952-46796039)
chr4 (38-215)||(56156933-56157110)
chr4 (116-192)||(26491438-26491514)
chr4 (38-216)||(36244708-36244886)
chr4 (145-215)||(36845407-36845477)
chr4 (20-95)||(41348354-41348429)
chr4 (20-107)||(47667281-47667368)
chr4 (233-284)||(49284189-49284240)
chr4 (20-97)||(29665500-29665577)
chr4 (220-277)||(38024632-38024689)
chr4 (20-95)||(38554044-38554119)
chr4 (230-276)||(29190983-29191029)
chr4 (110-178)||(44498495-44498563)
chr4 (39-178)||(49895075-49895215)
chr4 (102-178)||(56085382-56085458)
chr4 (20-95)||(3528305-3528380)
chr4 (38-97)||(43418146-43418205)
chr4 (21-107)||(56001196-56001281)
chr4 (220-277)||(6885124-6885181)
[»] chr8 (39 HSPs)
chr8 (19-217)||(43203202-43203400)
chr8 (40-215)||(31844366-31844541)
chr8 (20-172)||(42793740-42793892)
chr8 (110-215)||(28291293-28291398)
chr8 (110-214)||(43202095-43202199)
chr8 (21-216)||(24306049-24306244)
chr8 (110-216)||(38697865-38697971)
chr8 (110-215)||(31845807-31845912)
chr8 (38-178)||(24191412-24191552)
chr8 (216-284)||(2955937-2956005)
chr8 (38-128)||(9853652-9853742)
chr8 (220-277)||(6610880-6610937)
chr8 (65-178)||(10668004-10668117)
chr8 (128-215)||(28291396-28291483)
chr8 (20-173)||(38697196-38697349)
chr8 (216-284)||(40977561-40977624)
chr8 (132-193)||(17455067-17455128)
chr8 (20-97)||(39516423-39516500)
chr8 (20-96)||(22621060-22621136)
chr8 (133-193)||(24305073-24305133)
chr8 (110-216)||(9854892-9854998)
chr8 (221-284)||(22976431-22976494)
chr8 (222-284)||(43047920-43047983)
chr8 (38-107)||(7770100-7770169)
chr8 (38-107)||(7777777-7777846)
chr8 (155-216)||(24853385-24853445)
chr8 (40-109)||(39323888-39323957)
chr8 (110-178)||(10669458-10669526)
chr8 (144-216)||(19793104-19793176)
chr8 (110-178)||(20180687-20180755)
chr8 (28-107)||(38088-38166)
chr8 (131-178)||(7844746-7844793)
chr8 (40-95)||(36757166-36757221)
chr8 (159-200)||(23702970-23703011)
chr8 (159-200)||(23708811-23708852)
chr8 (110-178)||(24192676-24192744)
chr8 (220-284)||(28153869-28153933)
chr8 (216-244)||(36557093-36557121)
chr8 (110-178)||(39174740-39174808)
[»] chr1 (32 HSPs)
chr1 (20-215)||(48528819-48529015)
chr1 (40-217)||(12667218-12667395)
chr1 (38-215)||(26287717-26287902)
chr1 (132-216)||(48527531-48527615)
chr1 (110-212)||(7306268-7306370)
chr1 (20-178)||(40533527-40533685)
chr1 (110-215)||(26286410-26286515)
chr1 (110-218)||(12665786-12665894)
chr1 (110-216)||(5613098-5613204)
chr1 (100-215)||(5611724-5611839)
chr1 (38-218)||(14479456-14479636)
chr1 (216-284)||(21373978-21374046)
chr1 (38-173)||(51446784-51446919)
chr1 (121-215)||(7304810-7304904)
chr1 (20-96)||(24516448-24516524)
chr1 (20-96)||(40110578-40110654)
chr1 (220-277)||(11376645-11376702)
chr1 (220-277)||(29743434-29743491)
chr1 (220-277)||(42886699-42886756)
chr1 (110-216)||(28050318-28050424)
chr1 (234-277)||(44565031-44565074)
chr1 (220-270)||(2326876-2326926)
chr1 (28-96)||(26803150-26803218)
chr1 (40-108)||(51217720-51217788)
chr1 (131-178)||(18821773-18821820)
chr1 (221-260)||(37661968-37662007)
chr1 (20-178)||(6047954-6048110)
chr1 (110-221)||(13145905-13146012)
chr1 (156-185)||(48492757-48492786)
chr1 (240-277)||(49622958-49622995)
chr1 (220-268)||(5155597-5155645)
chr1 (102-178)||(6049429-6049505)
[»] chr3 (18 HSPs)
chr3 (110-215)||(37416451-37416556)
chr3 (110-212)||(37414996-37415098)
chr3 (28-177)||(10301749-10301898)
chr3 (21-127)||(7271518-7271624)
chr3 (216-284)||(46485588-46485656)
chr3 (110-178)||(14745213-14745281)
chr3 (38-217)||(49380895-49381074)
chr3 (38-128)||(14744148-14744238)
chr3 (19-97)||(48253046-48253124)
chr3 (40-97)||(53809439-53809496)
chr3 (38-215)||(13621899-13622076)
chr3 (28-97)||(10339923-10339992)
chr3 (20-97)||(47766877-47766954)
chr3 (68-176)||(34123241-34123348)
chr3 (149-185)||(40241759-40241795)
chr3 (131-178)||(7270358-7270405)
chr3 (38-97)||(54750387-54750445)
chr3 (40-109)||(17345411-17345480)
[»] scaffold0219 (2 HSPs)
scaffold0219 (101-218)||(8194-8311)
scaffold0219 (20-216)||(6892-7087)
[»] chr6 (12 HSPs)
chr6 (106-214)||(11968486-11968594)
chr6 (20-177)||(18242233-18242390)
chr6 (38-215)||(138147-138324)
chr6 (38-215)||(146168-146345)
chr6 (132-217)||(30231474-30231559)
chr6 (38-216)||(30232847-30233025)
chr6 (132-216)||(136624-136708)
chr6 (135-212)||(11967249-11967326)
chr6 (138-216)||(35037130-35037208)
chr6 (225-284)||(11455125-11455184)
chr6 (40-82)||(11968410-11968452)
chr6 (155-215)||(7312340-7312400)
[»] chr2 (29 HSPs)
chr2 (38-215)||(1147747-1147924)
chr2 (124-215)||(1309396-1309487)
chr2 (132-217)||(1149223-1149308)
chr2 (19-178)||(19397565-19397724)
chr2 (101-216)||(25561663-25561778)
chr2 (38-170)||(4919870-4920002)
chr2 (216-284)||(16256151-16256219)
chr2 (216-284)||(43589913-43589981)
chr2 (41-216)||(28610019-28610194)
chr2 (101-215)||(25559280-25559394)
chr2 (110-215)||(1310681-1310786)
chr2 (101-215)||(40556938-40557052)
chr2 (216-284)||(34210451-34210519)
chr2 (101-217)||(40559113-40559229)
chr2 (111-178)||(19398814-19398881)
chr2 (38-173)||(45699569-45699704)
chr2 (162-216)||(8320779-8320833)
chr2 (220-277)||(7759412-7759469)
chr2 (155-218)||(102414-102477)
chr2 (110-177)||(23233709-23233776)
chr2 (39-113)||(16289877-16289951)
chr2 (220-284)||(13173378-13173442)
chr2 (38-109)||(6707027-6707098)
chr2 (238-277)||(35734641-35734680)
chr2 (29-107)||(9473984-9474062)
chr2 (110-216)||(28611265-28611371)
chr2 (240-277)||(10355650-10355687)
chr2 (240-277)||(28808704-28808741)
chr2 (40-96)||(25569883-25569939)
[»] scaffold0092 (1 HSPs)
scaffold0092 (118-212)||(39825-39919)
[»] scaffold0155 (1 HSPs)
scaffold0155 (216-284)||(28004-28072)
[»] scaffold0470 (1 HSPs)
scaffold0470 (220-277)||(168-225)
[»] scaffold0114 (1 HSPs)
scaffold0114 (38-215)||(38538-38715)
[»] scaffold0084 (1 HSPs)
scaffold0084 (41-109)||(11807-11875)
[»] scaffold0141 (1 HSPs)
scaffold0141 (139-217)||(9855-9933)
[»] scaffold0148 (1 HSPs)
scaffold0148 (155-185)||(15908-15938)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 10736861 - 10737053
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||| | ||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||  ||||| ||||||||||||||| |||||    
T  10736861 gttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggaccaaattgattaacg 10736960  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaa 212  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  10736961 gagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggaccaaaagtccaattaa 10737053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 4124950 - 4124754
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||||| ||| |||| || ||||||| |||||||||||||||||||| ||||| || ||||| |||||| | ||||||||||||| |||||||    
T  4124950 gttcactattaaatacaatggatatacaatcaaatggttaaaattaaatcaaaatttttaaacattaaacaactaatgaaggggaccaaattaactaacg 4124851  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaa-ttacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||||| |||||||||||||||||||||| || |||||| |||||||||||||||| ||| ||||||||  |||||||| ||||||||||||    
T  4124850 gagcaaaacaaaagggaccaaaacgttgattttatgaattatggaaccaaaatgaaaacaagaaatttacttagaggaccaaaagtccaattaagcc 4124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 10735866 - 10735760
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||    
T  10735866 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattacttaggggaccaaaagtccaat 10735767  T
Q  210 taagcct 216  Q
    |||||||    
T  10735766 taagcct 10735760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 1103898 - 1104088
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaa 126  Q
    |||||| ||| ||| |||| |||| | |||||||||| |||||||   |||||||  ||| |||||||||| ||||||||||| || ||||| ||| |||    
T  1103898 attaaatacaatgggcatgtaatctaatggttaaaatcaaatcaatttttttagatattataaaactaacggaggggaccaaactggctaacagagaaaa 1103997  T
Q  127 acaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||||||| ||  ||| ||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  1103998 acaagaggaactgaaatgttgattttacgagttatgggactaaaatgttaacaacaaattacttaggggaccaaaagtccaattaagcctt 1104088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 35047593 - 35047417
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    ||||||||||||| | || ||||||||| |||||||| ||||  | |||||||||||| | | || |||   ||||||||||||||||||||| ||||||    
T  35047593 tggacatgcaatcgaatgattaaaattatatcaaaaaatttaagcattaaaaaactaatggatgg-acctttttgactaacggagcaaaacaaaagggac 35047495  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
       |||||||||||||||||||||||||||||||||||||||  |||| ||||||| || ||||||||||||||||||    
T  35047494 ttgaacgttgattttacgagttatgggaccaaaatgaaaacacgaaataacttaggggatcaaaaatccaattaagcc 35047417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 13519649 - 13519470
Alignment:
Q  41 acatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaa-----cgtaggggaccaaattgactaacggagcaaaacaagaggg 135  Q
    |||||||||||| |||||||||| | ||||||| |||||||| ||||||||||||     || | |||| ||| ||||| ||||||||||||||||| ||    
T  13519649 acatgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaagg 13519550  T
Q  136 accaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||| ||||||||| ||||||||||||| |||||| |||||| |||||| ||||| || ||||| |||||||||||||    
T  13519549 accaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagttagg-gaacaaaagtccaattaagcct 13519470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 41144531 - 41144636
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||||||||  | ||||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  41144531 ttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaat 41144630  T
Q  210 taagcc 215  Q
    ||||||    
T  41144631 taagcc 41144636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 28702650 - 28702565
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  28702650 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggacaaaaagtccaattaagcctt 28702565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 35081474 - 35081556
Alignment:
Q  134 ggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||    
T  35081474 ggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggaccaaaagtccaattaagcct 35081556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 4127268 - 4127379
Alignment:
Q  112 gactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaatta 211  Q
    |||||||||||||||    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||   ||||||||    
T  4127268 gactaacggagcaaacgttgaaggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttagaggaccaagggtccaatta 4127367  T
Q  212 agcctttgatta 223  Q
    ||||||| ||||    
T  4127368 agcctttaatta 4127379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 9219369 - 9219262
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||||| ||| || ||||||||||||  ||||||||| |||| ||||||||||||| |||||||||||||| |||||| |||||||||||| |    
T  9219369 gttcactattaaatacaatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggaggggatcaaattgactaatg 9219270  T
Q  120 gagcaaaa 127  Q
    ||||||||    
T  9219269 gagcaaaa 9219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 11797546 - 11797652
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    ||||| ||||| |||||||  ||||||    
T  11797546 ttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaat 11797645  T
Q  210 taagcct 216  Q
    |||||||    
T  11797646 taagcct 11797652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 1102700 - 1102615
Alignment:
Q  131 gagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||| ||| | |||||||| |||||||||||||    
T  1102700 gagggacctaaatgttgattttacgagttatgggaccaatatgtaaacaacaaattagttatgggaccaaaagtccaattaagcct 1102615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 1751382 - 1751314
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  1751382 tttgattaaaatctctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatat 1751314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 11726675 - 11726743
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||    
T  11726675 tttgattaaaatctctcccctccctttccctcccatcatttgaaccaaacatatatttaattgaaatat 11726743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 37276031 - 37275963
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||    
T  37276031 tttgattgaaatccctcccctccccttccctcccaccatttgaaccaaacatatatttaattgaaatat 37275963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 8188126 - 8188213
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    ||||||||||||| | | ||||||||||||||| |||||||||| | |||| ||||||||||| |||||||||||||| || ||||||    
T  8188126 gttcaccattaaatataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggagaggacca 8188213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 10329807 - 10329875
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| |||||||| | |||| ||||||||||||||||||||||||| |||||| ||||||    
T  10329807 tttgattaaaatctctcccctctcattccctcccatcatttgaaccaaacatatatttaattgaaatat 10329875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 37275315 - 37275378
Alignment:
Q  221 ttaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||    
T  37275315 ttaaaatctctcccctccccttccctcccaccatttgaaccaaacatatatttaattgaaatat 37275378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 41143351 - 41143237
Alignment:
Q  102 ggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaa 201  Q
    |||||| ||||||| || ||||||||  | ||||||||||| ||||||||||  | ||||| ||||||||| |||||||||||||| ||||  || |||     
T  41143351 ggaccatattgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaataaaaacaacaaattagttagaggatcaag 41143252  T
Q  202 aatccaattaagcct 216  Q
    | |||||||||||||    
T  41143251 agtccaattaagcct 41143237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 5975939 - 5975870
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    |||||||| | ||||||||||||||| |||||||||| | |||||||| ||||||| |||||||||||||    
T  5975939 attaaacataatggacatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaac 5975870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 11796743 - 11796565
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  || ||| || | ||||||| ||||| || ||||||||||| || | |||| ||| |||||| | |||||||||| | ||||||    
T  11796743 tggacatgcaatcaaacggctaatatcatatcaaaagttttaaacattaaaaaactagcggatgggatcaatttgactgagggagcaaaacca-agggac 11796645  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||||  |   |||||| | |||||||||||||||| ||||    ||||| ||||| |||||||  ||||||||||||||    
T  11796644 caaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcctt 11796565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 42642022 - 42642128
Alignment:
Q  109 attgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaa 208  Q
    ||||||| |||| ||||||  | |||||| ||| |||||||||||  | |||||||| |||||||||||||| |||||| ||||  ||||||| ||| ||    
T  42642022 attgactgacggggcaaaagcaaagggactaaatcgttgattttagaacttatgggatcaaaatgaaaacaataaattagttagaggaccaaatatcgaa 42642121  T
Q  209 ttaagcc 215  Q
    |||||||    
T  42642122 ttaagcc 42642128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 35384239 - 35384182
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||||| ||||||    
T  35384239 attaaaatctcttcccttcccttccgtcccatcatttgaaccaaacatatatttaatt 35384182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 10978212 - 10978303
Alignment:
Q  30 aaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacgga 121  Q
    ||||||| ||| ||||||||| | |||||||||||| ||||||||| ||| || ||||||| |||||| |||||| ||  |||||| |||||    
T  10978212 aaacacaatgggcatgcaatcgaatggttaaaattatatcaaaaatattaaacattaaaaatctaacggaggggatcactttgactgacgga 10978303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 30411519 - 30411559
Alignment:
Q  237 ccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  30411519 ccccttccctcccatcatttgaaccaaacatatatttaatt 30411559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 1273261 - 1273190
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    ||||| ||||||| | ||||| |||| | ||||||||| ||| || |||||||||||||| |||||||||||    
T  1273261 tggacctgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggggaccaaa 1273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 42793005 - 42792962
Alignment:
Q  158 ttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaa 201  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||    
T  42793005 ttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaa 42792962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 224516 - 224593
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||||| ||| || || ||| ||||| |||||||| | | |||||||| ||||||| ||||||||||||||    
T  224516 gttcactattaaatacaatgaacgtgcgatcaaatggttaaagtcatatcaaaaaatttagacattaaaaaactaacg 224593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 36898125 - 36897998
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatc--aaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagca 124  Q
    |||||| ||| | ||||||||||||| | |||||||| |||||   |||||||||| | |||||||| ||| | || | |||||||||| ||||||| ||    
T  36898125 attaaatacaattgacatgcaatcaaattgttaaaatcaaatcgttaaaattttagtcattaaaaaattaaggaagagaaccaaattgaataacggatca 36898026  T
Q  125 aaacaagagggaccaaaacgttgatttt 152  Q
    |||    ||||||||| | |||||||||    
T  36898025 aaagttaagggaccaacatgttgatttt 36897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 43442705 - 43442878
Alignment:
Q  39 ggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacc 138  Q
    |||||||||||||| | |||||||| |||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43442705 ggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaacaagagggacc 43442804  T
Q  139 aaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaa 212  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||    
T  43442805 aaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggaccaaaagttcaattaa 43442878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 10956031 - 10955841
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaa 126  Q
    ||||||| || ||||||  ||||||| |||||||||| |||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||    
T  10956031 attaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaatctaacggaggggactaaattgactaacggagcaaa 10955932  T
Q  127 acaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||||| |||||||||||||||  |||||||| | ||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  10955931 acaagagggactaaaacgttgattttataagttatggaatcaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcctt 10955841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 666899 - 666722
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacca 139  Q
    |||||||||| || |||||||||| |||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  666899 gacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattgactaacggagcaaaacaagagggaccg 666800  T
Q  140 aaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||  || |||||| |||||||| || ||||||||||||    ||||| ||||| ||| |||||||||||||||||||    
T  666799 aaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggactaaaaatccaattaagcctt 666722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 10957189 - 10957271
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagc 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  10957189 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaccaaaagtccaattaagc 10957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 26146629 - 26146825
Alignment:
Q  19 agttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaac 118  Q
    ||||||| |||||  ||| |||||||||||||  ||||||||||| | |||||||| ||||||| |||||||| ||||| |||||| ||| |||||||||    
T  26146629 agttcactattaactacaatggacatgcaatcgggtggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaac 26146728  T
Q  119 ggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    || |  |      ||||||| |||| |||||||||  | |||| ||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  26146729 ggtgacatttgtaagggaccgaaacattgattttaaaatttataggatcaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcc 26146825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 26135722 - 26135638
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  26135722 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtccaattaagcct 26135638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 669401 - 669507
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||| |||| ||||||| || ||||||| ||| ||||||||||||| |||||||||||||||||||||    ||||||||||| |||||||||||||||    
T  669401 ttgacaaacgaagcaaaataaaagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaat 669500  T
Q  210 taagcct 216  Q
    |||||||    
T  669501 taagcct 669507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 29589211 - 29589351
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||| ||| |||||| |||||||||| ||||||||||||||| || |||||||||||||   || ||||||||| | |||||||||||||   ||||||     
T  29589211 tggatatgaaatcaaatggttaaaatcaaatcaaaaattttaaacattaaaaaactaactgtggcgaccaaattaaataacggagcaaaagttgagggag 29589310  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||| | |||||||| || |||| ||||||||||||||||    
T  29589311 caaaatgatgattttaagacttattggaccaaaatgaaaac 29589351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 43441449 - 43441345
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||| ||||||||||||    ||||||||||||  || |||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||     
T  43441449 ttgattaacggagcaaacgctgagggaccaaaatattaattttatgagttatgagaccaaaatgaaaacaacaatttacttaggggaccaaaaatccaac 43441350  T
Q  210 taagc 214  Q
    |||||    
T  43441349 taagc 43441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 2414848 - 2414744
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||||||||| | |||||||||||||||| ||||| ||   |||||| |||||||||||||| |||||||||  | |||||||| ||||||    
T  2414848 ttgactaacggagcaaaaccaaagggaccaaaacgttggtttta-ga---atgggagcaaaatgaaaacaagaaattacttgagggaccaaaagtccaat 2414753  T
Q  210 taagccttt 218  Q
    |||||||||    
T  2414752 taagccttt 2414744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 35296759 - 35296913
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  ||||||||| | |||||||| ||||||| |||||||| ||||| ||  || ||| ||||||||||||||||||| |  || ||    
T  35296759 tggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaaccaagggtac 35296858  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttag 192  Q
    ||||| ||   |||||| | |||| ||||||||||| |||| |||||||| ||||    
T  35296859 caaaatgtgagttttacaatttataggaccaaaatgtaaactacaaattatttag 35296913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 1827976 - 1827908
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||    
T  1827976 tttgattaaaatctctcccctccccttcccttccatcatttgaaccaaacatatatttaattgaaatat 1827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 35295802 - 35295734
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  35295802 ttgattaactgagcaaaacaagagggactaaaacgttgactttacgagttatgggaccaaaatgtaaac 35295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 44376646 - 44376762
Alignment:
Q  55 ggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttac 154  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || |||  || |||||||| |||||||||    ||||||||||| | ||||||||     
T  44376646 ggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaa 44376745  T
Q  155 gagttatgggaccaaaa 171  Q
     ||||||||||||||||    
T  44376746 aagttatgggaccaaaa 44376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 44385513 - 44385629
Alignment:
Q  55 ggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttac 154  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || |||  || |||||||| |||||||||    ||||||||||| | ||||||||     
T  44385513 ggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgattttaa 44385612  T
Q  155 gagttatgggaccaaaa 171  Q
     ||||||||||||||||    
T  44385613 aagttatgggaccaaaa 44385629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 47645510 - 47645442
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |||||| ||||||    
T  47645510 tttgattaaaatctctcccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatat 47645442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 33118719 - 33118651
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| || |||||||||||| || |||||||||||||||||||||| |||||| ||||||    
T  33118719 tttgattaaaatctcttccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatat 33118651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 41329411 - 41329588
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaa-caagaggga 136  Q
    |||||||||||||||  |||||| || | |||||||| |||| || ||||||| |||||| |||||| ||| |||||| |||||| |||| |||| ||||    
T  41329411 tggacatgcaatcaaacggttaatatcacatcaaaaaatttaaacattaaaaatctaacggaggggatcaatttgactgacggagtaaaatcaag-ggga 41329509  T
Q  137 ccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    |||||| ||   |||||| | |||| ||||||||||| ||||    ||||| ||||| |||||||  ||||||||||||    
T  41329510 ccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcc 41329588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 17288168 - 17288245
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||||| ||| ||||||||||||||| | |||||||| | |||||||| ||||||| ||||||||||||||    
T  17288168 gttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacg 17288245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 32653638 - 32653461
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  ||||||||| | |||||||||||||| | |||||||||||||| | |||||||   ||||  |||||||||||| |  |||||    
T  32653638 tggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacggatgggaccattctgaccgacggagcaaaaccaaggggac 32653539  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    | ||| ||   |||||| | ||||| |||||||||| ||||    ||||| ||| | ||| ||| |||||||||||||    
T  32653538 cgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaagggactaaatatccaattaagcc 32653461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 3330864 - 3330728
Alignment:
Q  41 acatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaa 140  Q
    ||||||||||||  ||||||||| |||||||||| ||||||| |||| |||||||   ||  ||||||||||| || |||||||||    |||||||| |    
T  3330864 acatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaattgagtagaccaaattgaatagcggagcaaatgttgagggaccga 3330765  T
Q  141 aacgttgattttacgagttatgggaccaaaatgaaaa 177  Q
    || | |||||||| || ||| | ||||||||||||||    
T  3330764 aatggtgattttaagacttaagagaccaaaatgaaaa 3330728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 28326316 - 28326403
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    |||||| |||||| | | ||||||||||||||| |||||||||| | || ||||| ||||||| |||||||||||||| || ||||||    
T  28326316 gttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggagaggacca 28326403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 8426928 - 8427006
Alignment:
Q  139 aaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||||| |||||||||||| |||  ||||||||||||||||  |||||| ||||| ||| |||| ||||||||||||||    
T  8426928 aaaacgatgattttacgagctataagaccaaaatgaaaacatgaaattaattaggggactaaaagtccaattaagcctt 8427006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 29008730 - 29008787
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||||||| || | |||||||||| |||||||||||||| |||||||||| ||||||    
T  29008730 attaaaatctcttcactccccttccctcccatcatttgaatcaaacatatatttaatt 29008787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 41515186 - 41515109
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||||| | | ||||||||||||||| |||||||||| | || ||||| ||||||| |||||||| |||||    
T  41515186 gttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacg 41515109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 12314005 - 12314049
Alignment:
Q  240 cttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||    
T  12314005 cttccctcccatcatttgaaccaaacatatatttaattgaaatat 12314049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 40461270 - 40461326
Alignment:
Q  228 ccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||| |||| || |||| ||||||||||||||||||||||||| |||||| ||||||    
T  40461270 cccttcccttcctttccctcccatcatttgaaccaaacatatatttaattgaaatat 40461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 44372832 - 44372764
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||||||||||||   |||||||||||| | | |||||| |||||||| |||||||||||||||    
T  44372832 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44372764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 44381688 - 44381620
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||||||||||||   |||||||||||| | | |||||| |||||||| |||||||||||||||    
T  44381688 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44381620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 45721713 - 45721769
Alignment:
Q  41 acatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||||||||| |||||||||| | || ||||| ||||||| ||||||||||||||    
T  45721713 acatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 45721769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 44119143 - 44119215
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttccca----tcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||| |||||| ||| ||| |||||    |||||||||||||||||||| |||||| ||||||    
T  44119143 tttgattaaaatccatccccttcccatccctcccacccatcatttgaaccaaacatatatttaattgaaatat 44119215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 43931840 - 43931881
Alignment:
Q  68 tcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    |||||||| |||||| |||||||||||||| |||||||||||    
T  43931840 tcaaaaatgttagacattaaaaaactaacggaggggaccaaa 43931881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 44554825 - 44554854
Alignment:
Q  156 agttatgggaccaaaatgaaaacaacaaat 185  Q
    ||||||||||||||||||||||||||||||    
T  44554825 agttatgggaccaaaatgaaaacaacaaat 44554854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 26631162 - 26631340
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacca 139  Q
    |||||||||||||||||||||||| |||||||||| ||||||| |||||  || |||| |||||||||||||||||||||||||||||||||||| ||||    
T  26631162 gacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagaggaacca 26631261  T
Q  140 aaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagccttt 218  Q
    ||| ||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| |||||||||||||||    
T  26631262 aaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttgggggaccaaaagtccaattaagccttt 26631340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 36846501 - 36846674
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||| |||||| ||||||| | |||||||||||||| ||||||||||||||||||||||    
T  36846501 tggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaa-actaacggaagggaccaaattgacgaacggagcaaaacaagagggac 36846599  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaa 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  36846600 caaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggggccaaaagtccaattaa 36846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 35348983 - 35348795
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaa 126  Q
    ||||||| || ||||||  ||||||| |||||||||| |||||||||||||||||| ||||||| |||||| ||||||| ||||||||| ||| ||||||    
T  35348983 attaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaa 35348884  T
Q  127 acaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  35348883 acaagagggactaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcc 35348795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 39056611 - 39056423
Alignment:
Q  27 attaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaa 126  Q
    ||||||| || ||||||  ||||||| |||||||||| |||||||||||||||||| ||||||| ||||||  ||| || ||||||||||||||||||||    
T  39056611 attaaacgcaatggacactcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggtgggaactaaattgactaacggagcaaa 39056512  T
Q  127 acaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  39056511 acaagagggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattacttaagggaccaaaagtccaattaagcc 39056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 1521126 - 1521313
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtag----------gggaccaaattgactaacggagcaaaa 127  Q
    ||||||| ||||||| |||||||||| |||| |||||||| |||| |||||||| ||||| ||          |||||||||||||||||||||| ||||    
T  1521126 tggacatacaatcaaatggttaaaataaaataaaaaattt-agacattaaaaaattaacgaagtaaaagttgagggaccaaattgactaacggagtaaaa 1521224  T
Q  128 caagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
       |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||  |||||||| |||||||||||||    
T  1521225 gttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaattagttagaggaccaaaagtccaattaagcct 1521313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 35350143 - 35350228
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  35350143 agggaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggaccaaaagtccaattaagcctt 35350228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 44499925 - 44500065
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  ||||||||| |||||||||| | ||||| |||| ||||||||| || ||| ||| ||||||||||||||||||    ||||||    
T  44499925 tggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtggatcaatttgactaacggagcaaaagttaagggac 44500024  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||| | |||||||| ||||||||||||||||| ||||||    
T  44500025 caaaatgatgattttaagagttatgggaccaaaacgaaaac 44500065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 26629894 - 26629789
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||| ||||||||||||    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26629894 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaagtccaat 26629795  T
Q  210 taagcc 215  Q
    ||||||    
T  26629794 taagcc 26629789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 39057802 - 39057886
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  39057802 agggaccaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattacttaggggaccaaaagtccaattaagcct 39057886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 1519914 - 1519809
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||| |||||||    |||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| ||||||    
T  1519914 ttgactaacagagcaaatgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaat 1519815  T
Q  210 taagcc 215  Q
    ||||||    
T  1519814 taagcc 1519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 8363359 - 8363508
Alignment:
Q  67 atcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggac 166  Q
    ||||||||||||| || |||||||||||||| |||||| ||| ||||||||||||||||||| | ||||||||||| ||   |||||| | |||| ||||    
T  8363359 atcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggac 8363458  T
Q  167 caaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||| ||||    ||||| ||||| |||||||  |||||||||||||    
T  8363459 caaaatgtaaactcataattatttaggggaccaaatgtccaattaagcct 8363508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 42739684 - 42739752
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  42739684 tttgattaaaatccctcccctccccttccgtcccatcatttgaaccaaacatatatttaattgaaatat 42739752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 37106254 - 37106364
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||| ||||||| |||||||||||  | |||||||||| |||||||||||  | ||||||||||||||| |||||||||||||| ||||| ||||||    
T  37106254 gggaccatattgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaa 37106353  T
Q  201 aaatccaatta 211  Q
    | ||| |||||    
T  37106354 atatcgaatta 37106364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 52137601 - 52137423
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaac-aagaggga 136  Q
    |||||||||||||||  ||||||||| | |||||||| ||||||| || ||||||||||| ||  ||  || |||||  |||||| ||||| |||||| |    
T  52137601 tggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggagatgatgaatttgaccgacggagtaaaaccaagagg-a 52137503  T
Q  137 ccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||| |||| |||||| | |||||||||||||||| |||||   ||||| ||||  ||||||| ||||||||||||||    
T  52137502 ccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatatccaattaagcct 52137423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 26425784 - 26425870
Alignment:
Q  116 aacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaa 202  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||| | ||||||||||||||   |||||||||||| ||||||||    
T  26425784 aacggagcaaaacaagagagaccaaaatattgattttacgagttattgtaccaaaatgaaaactgaaaattacttaggggaccaaaa 26425870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 1921232 - 1921164
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||| ||||||    
T  1921232 tttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatat 1921164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 22443835 - 22443903
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||| ||||||    
T  22443835 tttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatat 22443903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 26495295 - 26495119
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacca 139  Q
    |||||||||||||  || ||| || | ||||||||||||| || |||||||||||||| |||||| ||| |||||| |||||||||||| |  |||||||    
T  26495295 gacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggacca 26495196  T
Q  140 aaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||| ||   |||||| | |||| ||| ||||||| ||||    ||||| ||||| ||||||| || |||||||||||    
T  26495195 aaatgtgagttttacaatttataggagcaaaatgtaaactcataattatttaggggaccaaatattcaattaagcct 26495119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 46795952 - 46796039
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    |||||| |||||| ||| ||||||||||||||| |||||||||| | |||||||| ||||||| |||||||||||||| || ||||||    
T  46795952 gttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 46796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 56157110 - 56156933
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    ||||||||||| |||  || ||| || | ||||||||||||| || |||||||||||||| |||||  ||| |||| | |||||||||||| |  | |||    
T  56157110 tggacatgcaaccaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggggtcaatttgattgacggagcaaaaccaaggagac 56157011  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||| ||   |||||| | |||||||||||||||| ||||    ||||| ||||| ||||||| |||||||||||||    
T  56157010 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaagcc 56156933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 26491514 - 26491438
Alignment:
Q  116 aacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttag 192  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||  ||||   |||||||||||    
T  26491514 aacggagcaaaataagagggaccaaaatgttgattttacgagttatgagaccaaaatataaactgaaaattacttag 26491438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 36244708 - 36244886
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaa-caagaggga 136  Q
    |||||||||||||||  || ||| || | |||||| |||||| || |||||||||||||| |||||| ||| |||||| ||||||||||| |||| ||||    
T  36244708 tggacatgcaatcaaacggctaatatcatatcaaacattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaatcaag-ggga 36244806  T
Q  137 ccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    | |||| ||   |||||| | |||||||| ||||||| ||||    ||||| || || ||||||| ||||||||||||||    
T  36244807 caaaaatgtgagttttacaatttatgggatcaaaatgtaaactcataattattttggggaccaaatatccaattaagcct 36244886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 36845477 - 36845407
Alignment:
Q  145 ttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||| ||||||||| || |||||||||||||||| |||| |||| |||||||| ||||||||||||    
T  36845477 ttgattttatgagttatggaactaaaatgaaaacaacaatttacctaggtgaccaaaagtccaattaagcc 36845407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 41348429 - 41348354
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaa 95  Q
    ||||||| ||||| ||| ||||||||||||||| || ||||||| | ||||||||||||| || ||||||||||||    
T  41348429 gttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaa 41348354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 47667368 - 47667281
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    |||||| |||| | ||| ||||||||||||||| |||||||||| | || ||||| ||||||| |||||||||||||| || ||||||    
T  47667368 gttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagaggacca 47667281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 49284189 - 49284240
Alignment:
Q  233 ccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  49284189 ccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatat 49284240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 29665500 - 29665577
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||| | ||| ||||||||||||||| |||||||||| | |||||||| ||||||| |||||||| |||||    
T  29665500 gttcacaattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacg 29665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 38024632 - 38024689
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||| | | |||||||||||| ||||||||||||||||||||||||| ||||||    
T  38024632 attaaaattcattccctccccttccctcccatcatttgaaccaaacatatatttaatt 38024689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 38554119 - 38554044
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaa 95  Q
    |||||| |||||| ||| ||||| ||| ||||| |||||||||| | |||||||| ||||||| ||||||||||||    
T  38554119 gttcactattaaatacaatggacgtgcgatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 38554044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 29191029 - 29190983
Alignment:
Q  230 ctcccctccccttccttcccatcatttgaaccaaacatatacttaat 276  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  29191029 ctccccttcccttccctcccatcatttgaaccaaacatatatttaat 29190983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 44498563 - 44498495
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||| ||||||||   |||||||||||| | |||||||| ||||||||||||||||| ||||||    
T  44498563 ttgaataacagagcaaaagttgagggaccaaaatgatgattttaagagttatgggaccaaaacgaaaac 44498495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 49895215 - 49895075
Alignment:
Q  39 ggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaaga-gggac 137  Q
    |||| ||||||||| |||||| ||| ||||||||||  |||| | |||| |||||||||   | ||||||||||| | |||||||||||   || |||||    
T  49895215 ggacctgcaatcaaatggttagaatcaaatcaaaaaaattaggcattaagaaactaacggtagagaccaaattgaatgacggagcaaaagttgaggggac 49895116  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||| | | ||| ||  | |||||||||||||||||||||    
T  49895115 caaaatgataattatagaacttatgggaccaaaatgaaaac 49895075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 56085458 - 56085382
Alignment:
Q  102 ggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||||| ||||| ||||||    |||||||||||| | |||||||| || ||||| |||||||||||||||    
T  56085458 ggaccaaattgaataacgaagcaaacattgagggaccaaaatgatgattttaagacttatgagaccaaaatgaaaac 56085382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 3528380 - 3528305
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaa 95  Q
    |||||| |||| | ||| ||||||||||||||| |||||||||| | || |||||  |||||| ||||||||||||    
T  3528380 gttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaaattagacattaaaaaactaa 3528305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 43418205 - 43418146
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    ||||| ||||||||| ||||| |||| ||||||||||| |||||| |||||| |||||||    
T  43418205 tggacttgcaatcaaatggttgaaatcaaatcaaaaatattagacattaaaatactaacg 43418146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 56001196 - 56001281
Alignment:
Q  21 ttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    ||||| |||| | ||| ||||||||||||||| |||||||||| | || |||||  |||||| |||||||||||||| || ||||||    
T  56001196 ttcactattagatacaatggacatgcaatcaaatggttaaaatcacat-aaaaaaattagacattaaaaaactaacgaagaggacca 56001281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 6885124 - 6885181
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||| | |||||| | | ||||||||||||||||||| ||||| ||||||    
T  6885124 attaaaatcccttctctccccctacctcccatcatttgaaccaaatatatatttaatt 6885181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 43203202 - 43203400
Alignment:
Q  19 agttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaac 118  Q
    |||||||  ||||| ||| ||||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||    
T  43203202 agttcacttttaaatacaatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgac 43203301  T
Q  119 ggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||| |||   |||||||| ||||||||||||||    
T  43203302 ggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatgaaaataacaaattatttaatggaccaaaagtccaattaagcctt 43203400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 31844541 - 31844366
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacca 139  Q
    |||||||||||||||||||||||| |||||||||||||||||  |||||  || |||| |||||||||||||||||||||||||||||||||||||||||    
T  31844541 gacatgcaatcaagtggttaaaatcaaatcaaaaattttagaaattaaaggacaaacggaggggaccaaattgactaacggagcaaaacaagagggacca 31844442  T
Q  140 aaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||| ||| ||||||||||||| ||||| |||||||||||||||||||||||  | |||||||| ||||||||||||    
T  31844441 aaatgttaattttacgagttacgggactaaaatgaaaacaacaaattactttagggaccaaaagtccaattaagcc 31844366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 42793892 - 42793740
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||||  ||| ||||||||||||| | |||||||||| | ||||||| |||||||| |||||||| ||||  ||||||||   ||||||||||    
T  42793892 gttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacg 42793793  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaat 172  Q
    ||||||||||||||||||||||| ||| ||||||| | |||||||||||||||    
T  42793792 gagcaaaacaagagggaccaaaatgttaattttacaatttatgggaccaaaat 42793740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 28291398 - 28291293
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||| ||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||    ||||||||||| |||||||||||||||    
T  28291398 ttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaat 28291299  T
Q  210 taagcc 215  Q
    ||||||    
T  28291298 taagcc 28291293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 43202199 - 43202095
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||| |||||    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||    
T  43202199 ttgactaacggtgcaaacgttgagggaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattacttaggggatcaaaagtccaat 43202100  T
Q  210 taagc 214  Q
    |||||    
T  43202099 taagc 43202095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 24306049 - 24306244
Alignment:
Q  21 ttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacgg 120  Q
    ||||| |||||| ||| |||| || |||| || ||||||||||||||||||||  ||||| | ||||||||||||||    |||||   || ||||||||    
T  24306049 ttcactattaaatacaatggagatccaattaaatggttaaaattaaatcaaaatatttaggcattaaaaaactaacggcatggacctttttaactaacgg 24306148  T
Q  121 agcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
     |||||     | |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||    
T  24306149 ggcaaacgttaaaggaccaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattacttagggaaccaaaagtcctattaagcct 24306244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 38697971 - 38697865
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||| |  |||||||||||| ||||||||   ||||    
T  38697971 ttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattacttaggggaccaaaagatcaat 38697872  T
Q  210 taagcct 216  Q
    |||||||    
T  38697871 taagcct 38697865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 31845807 - 31845912
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||| ||||||||||||    |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  31845807 ttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttacttaagggaccaaaactccaat 31845906  T
Q  210 taagcc 215  Q
    ||||||    
T  31845907 taagcc 31845912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 178
Target Start/End: Complemental strand, 24191552 - 24191412
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||| |||| ||||||||| || ||| ||| |||| |||| ||||||||    || |||    
T  24191552 tggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggagtggatcaatttgagtaacagagcaaaagttaagagac 24191453  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||| | |||||||| ||||||||||||||||| ||||||    
T  24191452 caaaatgatgattttaagagttatgggaccaaaacgaaaac 24191412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 2956005 - 2955937
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  2956005 tttgattaaaatctctccccttcccttccctcccatcatttgaaccaaacatatatttaattgaaatat 2955937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 9853742 - 9853652
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaac 128  Q
    |||| ||||||||||  ||||||||||| |||||||| ||||||  |||||||||||||| |||||| ||| |||||| ||||||||||||    
T  9853742 tggatatgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaac 9853652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 6610880 - 6610937
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  6610880 attaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaatt 6610937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 10668117 - 10668004
Alignment:
Q  65 aaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatggg 164  Q
    |||| ||||| ||||||| ||||||||| |||| | | |||||||||||||||| |||||||    |||||||||||| | ||||||||  | |||||||    
T  10668117 aaataaaaaaatttagacattaaaaaaccaacggatgtgaccaaattgactaacagagcaaatgttgagggaccaaaatgctgattttaaaatttatggg 10668018  T
Q  165 accaaaatgaaaac 178  Q
    ||||||||||||||    
T  10668017 accaaaatgaaaac 10668004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 28291396 - 28291483
Alignment:
Q  128 caagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||| |||||||    ||||| ||||| ||| |||||||||||||||||    
T  28291396 caagagggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttaggggactaaaaatccaattaagcc 28291483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 38697349 - 38697196
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    ||||||||||| | ||| |||||||  |||| | |||||||| | | ||||||| |||||||| |||||| | ||||| ||||||||   |||||| | |    
T  38697349 gttcaccattacaaacaatggacatataatctaatggttaaattcatatcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagg 38697250  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatg 173  Q
    |||||||| || ||||||||||| |||| |||||  | ||||| ||||||||||    
T  38697249 gagcaaaataaaagggaccaaaatgttggttttataatttatgagaccaaaatg 38697196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 40977624 - 40977561
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||| |||||| ||||||    
T  40977624 tttgattaaaatccctcccctccccttcc-----atcatttgaaccaaacatatatttaattgaaatat 40977561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 17455128 - 17455067
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagg 193  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||||| |||||| |||||    
T  17455128 agggaccaaaaagttgattttacaaattatgtgaccaaaatgaaaacaaaaaattagttagg 17455067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 39516423 - 39516500
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||| | ||| ||||||||||||||| |||||||||| | || ||||| ||||||| ||||||||||||||    
T  39516423 gttcactattagatacaatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacg 39516500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 22621060 - 22621136
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    ||||||| ||||| ||| ||||||||||||||| || ||||||| | ||||| ||||||| || |||||||||||||    
T  22621060 gttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaac 22621136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 24305133 - 24305073
Alignment:
Q  133 gggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagg 193  Q
    |||||||||| ||||||||||| |||||| | ||||||||||||||||  |||||||||||    
T  24305133 gggaccaaaatgttgattttactagttatagaaccaaaatgaaaacaaggaattacttagg 24305073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 9854892 - 9854998
Alignment:
Q  110 ttgactaacggagcaaaa-caagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaa 208  Q
    |||||| ||||||||||| ||||||| ||||||| || |||||||| | |||||||||||||||| |||||   ||||| ||||  |||||||  |||||    
T  9854892 ttgactgacggagcaaaatcaagagg-accaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  209 ttaagcct 216  Q
    ||||||||    
T  9854991 ttaagcct 9854998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 22976494 - 22976431
Alignment:
Q  221 ttaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||| ||||||||||| |||| || | ||||||||||||||||||||||| |||||| ||||||    
T  22976494 ttaatatccctccccttccctccccttccatcatttgaaccaaacatatatttaattgaaatat 22976431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 43047983 - 43047920
Alignment:
Q  222 taaaatccctcccctccccttcct-tcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||||||| ||||  ||| ||||||||||||||||||||| |||||| ||||||    
T  43047983 taaaatccctcccctccctttcccctcctatcatttgaaccaaacatatatttaattgaaatat 43047920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 7770169 - 7770100
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    ||||||| ||||||| |||||||||| | || ||||| ||||||| |||||||||||||| || ||||||    
T  7770169 tggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggacca 7770100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 7777846 - 7777777
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    ||||||| ||||||| |||||||||| | || ||||| ||||||| |||||||||||||| || ||||||    
T  7777846 tggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggacca 7777777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 24853385 - 24853445
Alignment:
Q  155 gagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||||||||||||| |||||||||||||| | ||||| ||||||| || |||||||||||    
T  24853385 gagttatgggaccaaattgaaaacaacaaataagttagg-gaccaaagattcaattaagcct 24853445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 39323957 - 39323888
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    ||||||||||| | |||||||||||| ||||||||| |||||  || ||||||||||| || ||||||||    
T  39323957 gacatgcaatctaatggttaaaattatatcaaaaatattagatcttgaaaaactaacggagaggaccaaa 39323888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 10669458 - 10669526
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| ||||||||||||    |||| ||||||| |||||||||| || |||||||||||||||||||||    
T  10669458 ttgaataacggagcaaacgttgaggtaccaaaatgttgattttaagatttatgggaccaaaatgaaaac 10669526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 19793104 - 19793176
Alignment:
Q  144 gttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||||||| |||||||| |||||||||||     ||||||||| | ||||||||||| ||||||||||    
T  19793104 gttgattttacgaattatgggatcaaaatgaaaattgataattacttaagagaccaaaaatctaattaagcct 19793176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 20180687 - 20180755
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||||||||||||   |||||||||||| | | |||||| |||||||| |||||||||||||||    
T  20180687 ttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 38166 - 38088
Alignment:
Q  28 ttaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    ||||| ||| |||||||||||| || |||||||||| | |||||||| ||||||| || ||||||||||| || ||||||    
T  38166 ttaaatacaatggacatgcaattaaatggttaaaatcatatcaaaaaatttagacatt-aaaaactaacggagaggacca 38088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 7844793 - 7844746
Alignment:
Q  131 gagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||||| | |||||||| || |||||||||||||||||||||    
T  7844793 gagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaac 7844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 36757166 - 36757221
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaa 95  Q
    |||||||||| || |||||||||| | |||||||| ||||||| ||||||||||||    
T  36757166 gacatgcaattaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 36757221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 23703011 - 23702970
Alignment:
Q  159 tatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  23703011 tatgggaccaaaatgaaaataacaaattagttaggggaccaa 23702970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 23708811 - 23708852
Alignment:
Q  159 tatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||    
T  23708811 tatgggaccaaaatgaaaataacaaattagttaggggaccaa 23708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 24192676 - 24192744
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||||||| ||||   ||| |||||||| | |||||||| ||||||||||||||||| ||||||    
T  24192676 ttgattaacggagtaaaagttgagagaccaaaatgatgattttaagagttatgggaccaaaacgaaaac 24192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 28153933 - 28153869
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||| || |||||| ||||| | || || ||||||||||||||||  |||||||||||||    
T  28153933 attaaaatctcttccctcctcttcccttccctcctttgaaccaaacatatgtttaattaaaatat 28153869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 36557121 - 36557093
Alignment:
Q  216 tttgattaaaatccctcccctccccttcc 244  Q
    |||||||||||||||||||||||||||||    
T  36557121 tttgattaaaatccctcccctccccttcc 36557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 39174740 - 39174808
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||| |||||||||||||   |||||||||||| | ||||||||  | |||| ||||||||||||||||    
T  39174740 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaaaacttataggaccaaaatgaaaac 39174808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 48528819 - 48529015
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggtt-aaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaac 118  Q
    |||||| |||||| ||| ||||||||||||| | ||||| ||||| ||||||||| |||||||  |||||||||||||| | ||||||||||||||||||    
T  48528819 gttcactattaaatacaatggacatgcaatctaatggtttaaaatcaaatcaaaagttttagatattaaaaaactaacggatgggaccaaattgactaac 48528918  T
Q  119 ggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    |||| |||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  48528919 ggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattacttgggggaccaaaagtccaattaagcc 48529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 12667218 - 12667395
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggacca 139  Q
    ||||||||||||| || ||||||| |||||||||| ||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  12667218 gacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttgactaacggagcaaaacaagagggaccg 12667317  T
Q  140 aaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||| ||| ||||||||| || | ||||||||||||||||    ||||| ||||  ||| |||||||||||||||||||    
T  12667318 aaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggactaaaaatccaattaagcctt 12667395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 26287717 - 26287902
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtagg---------ggaccaaattgactaacggagcaaaac 128  Q
    ||||||| ||||||| |||||||||| |||| |||||||| |||| |||||||| ||||| ||          ||||||||||||||||||||| ||||     
T  26287717 tggacatacaatcaaatggttaaaatcaaataaaaaattt-agacattaaaaaattaacggagtaaaagttgaggaccaaattgactaacggagtaaaag 26287815  T
Q  129 aagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
      |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||    
T  26287816 ttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagtccaattaagcc 26287902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 48527615 - 48527531
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48527615 agggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaaatccaattaagcct 48527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 7306268 - 7306370
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |  ||||||| ||||||    
T  7306268 ttgactaacagaggaaaacaagagggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattacttaaggaaccaaaagtccaat 7306367  T
Q  210 taa 212  Q
    |||    
T  7306368 taa 7306370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 40533527 - 40533685
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||||  ||| ||||||||||||| | |||||||||| | ||||||| |||||||| |||||||| ||||| ||||||||   ||||||||||    
T  40533527 gttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacg 40533626  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||||| | ||||||||||||| |||| |||||| | |||||| ||||||||| ||||    
T  40533627 gagcaaagcgagagggaccaaaatgttggttttacaatttatggaaccaaaatgtaaac 40533685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 26286515 - 26286410
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||||||||||    |||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| ||||||    
T  26286515 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggaccaaaagtccaat 26286416  T
Q  210 taagcc 215  Q
    ||||||    
T  26286415 taagcc 26286410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 12665894 - 12665786
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||||||||||| |||||    ||||||||||| ||||||||||| |||    
T  12665894 ttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaataaaaactgataattacttaggggaccaaaaatcaaat 12665795  T
Q  210 taagccttt 218  Q
    |||||||||    
T  12665794 taagccttt 12665786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 5613098 - 5613204
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||||||||||    |||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||| ||||||    
T  5613098 ttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttaggggatcaaaagtccaat 5613197  T
Q  210 taagcct 216  Q
    |||||||    
T  5613198 taagcct 5613204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 5611839 - 5611724
Alignment:
Q  100 ggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgacca 199  Q
    |||||||||||| |||||| ||| ||||   |||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||   |||||    
T  5611839 ggggaccaaatttactaacagagtaaaagttgaggcaccaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaattagttaaaggacca 5611740  T
Q  200 aaaatccaattaagcc 215  Q
    ||| ||||||||||||    
T  5611739 aaagtccaattaagcc 5611724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 14479456 - 14479636
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  || ||| || | |||||||||||||  | |||||||||||||| |||||| ||| |||||| | |||||||||| |  |||||    
T  14479456 tggacatgcaatcaaacggctaatataatatcaaaaattttaatcattaaaaaactaacggaggggatcaatttgactgatggagcaaaaccaaggggac 14479555  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagccttt 218  Q
    ||||| ||   |||||| | |||||||||||||||| ||||    ||||| ||||| |||||||  |||||||||||||||    
T  14479556 caaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagccttt 14479636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 21373978 - 21374046
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  21373978 tttgattaaaatccctctcctccccttccctcccatcatttgaaccaaacatatatttaattgaaatat 21374046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 51446784 - 51446919
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||   |||||||| | |||||||| ||||||  |||||||||||||| |||||| ||| |||||| |||||||||||| |  |||||    
T  51446784 tggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaaggggac 51446883  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatg 173  Q
    ||||| || | |||||| | ||||| ||||||||||    
T  51446884 caaaatgtgggttttacaatttatgtgaccaaaatg 51446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 7304904 - 7304810
Alignment:
Q  121 agcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||| || |||||||||||||||||| || ||  ||||| | ||||||||||||    
T  7304904 agcaaaataagagggaccaaaatattgattttacgagttatgggatcacaatgaaaacaacaaattatttcgggaaccaagagtccaattaagcc 7304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 24516524 - 24516448
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||| ||||||| || |||||||||||||    
T  24516524 gttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 40110578 - 40110654
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||| ||||||| || |||||||||||||    
T  40110578 gttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaac 40110654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 11376702 - 11376645
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||||||| || ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  11376702 attaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaatt 11376645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 29743491 - 29743434
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||| |||| ||||||  ||||||||||||||||||||||||| ||||||    
T  29743491 attaaaatcccttcccttcccttctctcccatcatttgaaccaaacatatatttaatt 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 42886756 - 42886699
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||| || ||||||||| | ||||||||||||||||||||||| ||||||    
T  42886756 attaaaatcccttccatccccttcccttccatcatttgaaccaaacatatatttaatt 42886699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 28050424 - 28050318
Alignment:
Q  110 ttgactaacggagcaaaa-caagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaa 208  Q
    |||||||||||||||||| |||| |||||||||| || |||||||| | |||||||||||||||| |||||   ||||| ||| | |||||||  || ||    
T  28050424 ttgactaacggagcaaaatcaag-gggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaa 28050326  T
Q  209 ttaagcct 216  Q
    ||||||||    
T  28050325 ttaagcct 28050318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 44565074 - 44565031
Alignment:
Q  234 cctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  44565074 cctccccttccttcccatcatttgaaccaaacatgtatttaatt 44565031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 2326876 - 2326926
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatata 270  Q
    |||||||| ||| | |||||||||| |||||||||||||||||||||||||    
T  2326876 attaaaataccttcactccccttccctcccatcatttgaaccaaacatata 2326926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 26803150 - 26803218
Alignment:
Q  28 ttaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    ||||| ||| ||||||||||||||| |||||||||| | ||||| ||||||| || |||||| ||||||    
T  26803150 ttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaatactaac 26803218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 51217788 - 51217720
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaa 108  Q
    ||||||||||| | ||||| |||||| ||||||||| |||| | |||||||||||||| || |||||||    
T  51217788 gacatgcaatctaatggttgaaattatatcaaaaatattagtcattaaaaaactaacggagaggaccaa 51217720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 18821773 - 18821820
Alignment:
Q  131 gagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||| |||||||||||||||||||| || || ||||||||||||    
T  18821773 gagggaccgaaacgttgattttacgagttgtgagatcaaaatgaaaac 18821820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 37661968 - 37662007
Alignment:
Q  221 ttaaaatccctcccctccccttccttcccatcatttgaac 260  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  37661968 ttaaaatccctcccctccccttctctcccatcatttgaac 37662007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 6048110 - 6047954
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||| | ||| ||||| | ||||||| |||||| ||| |||||||||| ||||| | ||||||| |||  |||| | |||||||||| | |||    
T  6048110 gttcactattagatacaatggacctccaatcaaatggttagaatcaaatcaaaaaatttaggcattaaaaacctacggtagag-accaaattgaatgacg 6048012  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||||||   |||| ||||||| | | ||| || || ||||||||||||||| |||||    
T  6048011 gagcaaaagttgagg-accaaaatgataattataggacttatgggaccaaaattaaaac 6047954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 13146012 - 13145905
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||| ||||||||||||   || ||||| ||||||||||||| | ||| |||||||||| |||    ||||||||||||  | |||||||||||     
T  13146012 ttgactaaccgagcaaaacaag---gatcaaaatgttgattttacgattgatgcgaccaaaatgtaaattgaaaattacttagggaatcaaaaatccaa- 13145917  T
Q  210 taagcctttgat 221  Q
     |||||||||||    
T  13145916 caagcctttgat 13145905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 48492786 - 48492757
Alignment:
Q  156 agttatgggaccaaaatgaaaacaacaaat 185  Q
    ||||||||||||||||||||||||||||||    
T  48492786 agttatgggaccaaaatgaaaacaacaaat 48492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 49622958 - 49622995
Alignment:
Q  240 cttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  49622958 cttccctcccatcatttgaaccaaacatatatttaatt 49622995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 5155597 - 5155645
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacata 268  Q
    ||||||||||||||||| | ||||||| || || |||||||||||||||    
T  5155597 attaaaatccctccccttctcttcctttccctcctttgaaccaaacata 5155645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 6049429 - 6049505
Alignment:
Q  102 ggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||||| ||||| ||||||    |||||||||||| | |||||||| || ||||| ||||||||| |||||    
T  6049429 ggaccaaattgaataacgtagcaaacgttgagggaccaaaatgatgattttaggacttatgagaccaaaataaaaac 6049505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 37416451 - 37416556
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||    
T  37416451 ttgactaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggaccaaaaggccaat 37416550  T
Q  210 taagcc 215  Q
    ||||||    
T  37416551 taagcc 37416556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 37415098 - 37414996
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||||| || |||    
T  37415098 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattacttaagggaccaaaagtctaat 37414999  T
Q  210 taa 212  Q
    |||    
T  37414998 taa 37414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 10301749 - 10301898
Alignment:
Q  28 ttaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaa 127  Q
    ||||| ||| ||||||| ||||||| |||||||||| |||||||||| ||||||| |||||||||||||  |||  ||||||||||||||||||||||||    
T  10301749 ttaaatacaatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaacagaggacaccaaattgactaacggagcaaaa 10301848  T
Q  128 caagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaa 177  Q
       || |||||| |  | |||||||| || ||||||||||||||||||||    
T  10301849 gttgaaggaccatattgatgattttaagacttatgggaccaaaatgaaaa 10301898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 7271518 - 7271624
Alignment:
Q  21 ttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacgg 120  Q
    ||||| || ||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||  |||||| ||||||    
T  7271518 ttcactataaaatacaatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggaggggacggaattgaataacgg 7271617  T
Q  121 agcaaaa 127  Q
    |||||||    
T  7271618 agcaaaa 7271624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 46485588 - 46485656
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  46485588 tttgattaaaatccctcccttccccttccctcccatcatttgaaccaaacatatatttaattaaaatat 46485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 14745213 - 14745281
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  14745213 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggaccaagatgtaaac 14745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 49380895 - 49381074
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  || ||| || | ||||||||||||| || |||||||||||||| |||||| ||| |||||| |||||||||||| |  || ||    
T  49380895 tggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggagcaaaaccaagggtac 49380994  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||||  |   |||||| | |||| ||||||||||| ||||    ||||| ||||| ||||||| |||||||||||||||    
T  49380995 caaaatatgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaagcctt 49381074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 14744238 - 14744148
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaac 128  Q
    |||||||||||||||  ||||||||| | |||||||| ||||||| |||||||| ||||| ||  || ||| |||||||||||||||||||    
T  14744238 tggacatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaaac 14744148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 48253124 - 48253046
Alignment:
Q  19 agttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    ||||||| |||| | ||| ||||||||||||||| |||||||||| | |||||||| ||||||| ||||||||||||||    
T  48253124 agttcactattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacg 48253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 53809439 - 53809496
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    ||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||    
T  53809439 gacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacg 53809496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 13621899 - 13622076
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaa-caagaggga 136  Q
    |||||||||||||||  || ||| || | ||||||||||||| |  |||||||||||||  |||||| ||| |||||| ||| ||||||| |||| ||||    
T  13621899 tggacatgcaatcaaacggctaatatcatatcaaaaattttaaatattaaaaaactaactgaggggatcaatttgactgacgaagcaaaatcaag-ggga 13621997  T
Q  137 ccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    |||||| ||   |||||| | |||| ||||||||||| ||||    ||||| ||||| |||||||  ||||||||||||    
T  13621998 ccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcc 13622076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 10339923 - 10339992
Alignment:
Q  28 ttaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    ||||| ||| ||||||| ||||||| ||||| |||| |||||||||| ||||||| ||||||||||||||    
T  10339923 ttaaatacaatggacattcaatcaaatggttcaaatcaaatcaaaaaatttagacattaaaaaactaacg 10339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 47766877 - 47766954
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    |||||| |||| | ||| ||||||||||||||| |||||||||| | || ||||| ||||||| ||||||||||||||    
T  47766877 gttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacg 47766954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 34123348 - 34123241
Alignment:
Q  68 tcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggacc 167  Q
    ||||||| ||||||| || ||||||||||| |||||||||| |||| |||||||| ||||   || ||||||||  |||||||||  |||||||| |||     
T  34123348 tcaaaaaatttagacattgaaaaactaacggaggggaccaagttgaataacggagaaaaagttga-ggaccaaagtgttgattttttgagttatgagact 34123250  T
Q  168 aaaatgaaa 176  Q
    |||||||||    
T  34123249 aaaatgaaa 34123241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 40241759 - 40241795
Alignment:
Q  149 ttttacgagttatgggaccaaaatgaaaacaacaaat 185  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40241759 ttttaagagttatgggaccaaaatgaaaacaacaaat 40241795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 7270405 - 7270358
Alignment:
Q  131 gagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||||| |||||||||| || ||||||||| |||||||||||    
T  7270405 gagggaccaaaatgttgattttaagacttatgggacaaaaatgaaaac 7270358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 54750387 - 54750445
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacg 97  Q
    ||||||| ||||||| |||||||||| |||||||||| ||||||| |||||||| |||||    
T  54750387 tggacatacaatcaaatggttaaaatcaaatcaaaaa-tttagacattaaaaaattaacg 54750445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 17345480 - 17345411
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    ||||||||||| | ||||| |||| | || |||||| |||||| |||||||||||||| || ||||||||    
T  17345480 gacatgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggaccaaa 17345411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 8194 - 8311
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||||    
T  8194 gggatcaaattgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggaccaa 8293  T
Q  201 aaatccaattaagccttt 218  Q
    || | |||||||||||||    
T  8294 aagttcaattaagccttt 8311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 7087 - 6892
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| |||||| | | |||||||||||||||  ||||||||||| |||||||| ||||||  || ||||||||||| |||| | ||| |||||  |||    
T  7087 gttcactattaaatataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggaggg-atcaatttgaccgacg 6989  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||| | ||| ||||||| |||| |||||| | |||||||||||||||| |||||   ||||| ||||  |||||||  |||||||||||||    
T  6988 gagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagcct 6892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 11968486 - 11968594
Alignment:
Q  106 caaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatc 205  Q
    |||||||||||||  |||||||||| ||||||||||||||| |||||||  |||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  11968486 caaattgactaacaaagcaaaacaaaagggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggaccaaaaatc 11968585  T
Q  206 caattaagc 214  Q
    |||||||||    
T  11968586 caattaagc 11968594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 18242233 - 18242390
Alignment:
Q  20 gttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacg 119  Q
    |||||| || ||| ||| ||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| ||||||| ||||||| ||| |    
T  18242233 gttcactataaaatacaatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggaggggacgaaattgaataatg 18242332  T
Q  120 gagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaa 177  Q
    ||||||||   |||||||||||  | |||||||| || ||||||||||| ||| ||||    
T  18242333 gagcaaaagttgagggaccaaattgatgattttaagacttatgggaccagaataaaaa 18242390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 138147 - 138324
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||   |||||||||||| |||||||| ||||||| |||||||| ||||| |||||| ||| ||||| ||||| |  |      ||||||    
T  138147 tggacatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgaccaacggtgacatttgtaagggac 138246  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    | ||||||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||    
T  138247 cgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaattaagcc 138324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 146168 - 146345
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||   |||||||||||| |||||||| ||||||| |||||||| ||||| |||||| ||| ||||| ||||| |  |      ||||||    
T  146168 tggacatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgaccaacggtgacatttgtaagggac 146267  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    | ||||||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||    
T  146268 cgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtcaaattaagcc 146345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 30231559 - 30231474
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||    
T  30231559 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaagggaccaaaagtccaattaagcctt 30231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 30232847 - 30233025
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||   |||||||||||| || ||||| ||||||| |||||||| |||| ||||| | ||| |||||| || | |  |      ||||||    
T  30232847 tggacatgcaatcggatggttaaaattatataaaaaagtttagacattaaaaaaataacatagggaatcaatttgacttacagtgacatttgtaagggac 30232946  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    | ||||||||||||||  ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  30232947 cgaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaactagttaggggaccaaaagtccaattaagcct 30233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 136708 - 136624
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    ||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||| ||||| ||| |||| |||||||||||||    
T  136708 agggaccaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaattagttaggggacgaaaagtccaattaagcct 136624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 11967326 - 11967249
Alignment:
Q  135 gaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaa 212  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||||||| ||||| |||||||| | |||||||    
T  11967326 gaccaaaacattgattttatgagttatgaaaccaaaatgaaaacaacaaattaattaggggaccaaaagtacaattaa 11967249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 35037208 - 35037130
Alignment:
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||||||||||||| |||||||| |||||||||||||||   |||||| ||||  ||||||||| ||||||||||||    
T  35037208 caaaacgttgattttatgagttatgagaccaaaatgaaaactgaaaattaattagaggaccaaaaaaccaattaagcct 35037130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 11455184 - 11455125
Alignment:
Q  225 aatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||| |||||| ||||||    
T  11455184 aatccctcccgtccccttccctcctatcatttgaaccaaacatatatttaattgaaatat 11455125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 11968410 - 11968452
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagac 82  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  11968410 gacatgcaatcaaatggttaaaatcaaatcaaaaattttagac 11968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 7312340 - 7312400
Alignment:
Q  155 gagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    |||||||| ||||||||| |||||||||||| | ||||  ||||||| || ||||||||||    
T  7312340 gagttatgagaccaaaataaaaacaacaaataagttagaagaccaaatattcaattaagcc 7312400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 1147924 - 1147747
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||   |||||||||| | |||||||| ||||||| |||||||| ||||| |||||| ||| ||||||||||| |  |      ||||||    
T  1147924 tggacatgcaatcggatggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgactaacggtgatatttgtaagggac 1147825  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    | ||||||||||||||  ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  1147824 cgaaacgttgattttagaagttatgggactaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcc 1147747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 1309487 - 1309396
Alignment:
Q  124 aaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||||||||||||||||| ||| ||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  1309487 aaaacaagagggaccaaaatgttaattttacgagttatatgactaaaatgaaaacaacaaattacttaggggaccaaaaatccaattaagcc 1309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 1149223 - 1149308
Alignment:
Q  132 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  1149223 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggaccaaaagtccaattaagcctt 1149308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 19397724 - 19397565
Alignment:
Q  19 agttcaccattaaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaac 118  Q
    ||||||| |||||  ||| ||||||||||||| | |||||||||||| ||||||| |||||||| |||||||| ||||| | ||||||    ||||||||    
T  19397724 agttcactattaattacaatggacatgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacggaagggacctttatgactaac 19397625  T
Q  119 ggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||| ||||||||||||| |||  |||||  | |||||||||||||||| ||||    
T  19397624 ggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaac 19397565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 25561663 - 25561778
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||| ||||||| | |||||||||  | |||||||||| |||||||||||  | |||||||||||||||||||||||||||||| ||||||||||||    
T  25561663 gggaccatattgactgatggagcaaaagcaaagggaccaaatcgttgattttagaatttatgggaccaaaatgaaaacaacaaattagttaggcgaccaa 25561762  T
Q  201 aaatccaattaagcct 216  Q
    | ||| ||||| ||||    
T  25561763 atatcgaattacgcct 25561778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 4920002 - 4919870
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  ||||||||| | |||||||| |||||| ||||||||||||| | |||||| ||| |||||| |||||||||||| |  |||||    
T  4920002 tggacatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggaggggatcaatttgactgacggagcaaaaccaaggggac 4919903  T
Q  138 caaaacgttgattttacgagttatgggaccaaa 170  Q
    ||||| || |||||||  | |||||||||||||    
T  4919902 caaaatgtggattttataatttatgggaccaaa 4919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 16256219 - 16256151
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  16256219 tttgattaaaatccctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatat 16256151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 43589913 - 43589981
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  43589913 tttgattaaaattcctcccctccccttccctcccatcatttgaaccaaacatatatttaattaaaatat 43589981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 28610194 - 28610019
Alignment:
Q  41 acatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggaccaa 140  Q
    ||||||||||||  || ||| || | ||||||||||||| || |||||||||||||| | |||| ||| |||||| |||||||||||| |  ||||||||    
T  28610194 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggatgggatcaatttgactgacggagcaaaaccaaggggaccaa 28610095  T
Q  141 aacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    || ||  ||||||| | |||||||||||||||| ||||    ||||| ||||| |||||||  |||||||||||||    
T  28610094 aatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggtgaccaaatgtccaattaagcct 28610019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 25559394 - 25559280
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    |||||||  |||||| |||||||||||  | |||||||||| |||||||||||  | ||||||||||||||| |||||||||||||| ||||| ||||||    
T  25559394 gggaccatcttgactgacggagcaaaagcaaagggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaattagttaggggaccaa 25559295  T
Q  201 aaatccaattaagcc 215  Q
    | ||| |||||||||    
T  25559294 atatcgaattaagcc 25559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 1310681 - 1310786
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||||||| | |||||| ||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||| || ||||   | ||||||    
T  1310681 ttgactaacgaaacaaaacgagagggaccaaaatgttgattttacgagttatgagattaaaatgaaaacaacaaattacttcggggaccttgagtccaat 1310780  T
Q  210 taagcc 215  Q
    ||||||    
T  1310781 taagcc 1310786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 40557052 - 40556938
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||| ||||||| |||| ||||||  | |||||||||| |||||||||||  | ||||| |||||||||||||||||||||||| ||||  ||||||    
T  40557052 gggaccatattgactgacggggcaaaagcaaagggaccaaatcgttgattttagaacttatgagaccaaaatgaaaacaacaaattaattagaggaccaa 40556953  T
Q  201 aaatccaattaagcc 215  Q
    | ||| |||||||||    
T  40556952 atatcaaattaagcc 40556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 34210451 - 34210519
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||| ||||||    
T  34210451 tttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatat 34210519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 40559113 - 40559229
Alignment:
Q  101 gggaccaaattgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaa 200  Q
    ||||||| ||||||| |||  ||||||  | ||||||||||   |||||||||  | |||||||||||||||||||||||||||||| ||||  ||||||    
T  40559113 gggaccatattgactgacgaggcaaaagcaaagggaccaaattattgattttagaacttatgggaccaaaatgaaaacaacaaattagttagaggaccaa 40559212  T
Q  201 aaatccaattaagcctt 217  Q
    | ||| |||||||||||    
T  40559213 atatcgaattaagcctt 40559229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 19398814 - 19398881
Alignment:
Q  111 tgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 178  Q
    |||||||||||||||||||||||||||||||| || | |||||| | |||||||||||||||| ||||    
T  19398814 tgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaac 19398881  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 173
Target Start/End: Complemental strand, 45699704 - 45699569
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||   |||||||| | |||||||| ||||||  |||||||||||| | |||||  ||| |||||| |||||||||||| | ||||||    
T  45699704 tggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggagggggtcaatttgactgacggagcaaaaccaaagggac 45699605  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatg 173  Q
     |||| ||   |||||| | |||||| |||||||||    
T  45699604 taaaatgtgagttttacaatttatggaaccaaaatg 45699569  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 8320833 - 8320779
Alignment:
Q  162 gggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcct 216  Q
    |||||||||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  8320833 gggaccaaaatgtaaacaagaaattacttaggggaccaaaagtccaattaagcct 8320779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 7759412 - 7759469
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||||||| || ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  7759412 attaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaatt 7759469  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 102414 - 102477
Alignment:
Q  155 gagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagccttt 218  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||    |||||||||||||    
T  102414 gagttatgggaccaaaatgaaaacaagaaattagttaggggaccaaatgatcaattaagccttt 102477  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 23233709 - 23233776
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaa 177  Q
    |||| |||||||||||||   |||||||||||| | |||||||| || ||||||||||||||||||||    
T  23233709 ttgaataacggagcaaaagttgagggaccaaaatgatgattttaagacttatgggaccaaaatgaaaa 23233776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 16289951 - 16289877
Alignment:
Q  39 ggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattga 113  Q
    |||||||| ||||| ||  |||||| |||| ||||||||||||| |||||||||||| | ||||| |||||||||    
T  16289951 ggacatgcgatcaaatgagtaaaatcaaataaaaaattttagacattaaaaaactaatggaggggtccaaattga 16289877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 13173442 - 13173378
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||||| |||||| || | |  || ||||||||||||||||| |||||||||||||    
T  13173442 attaaaatccctcccttcccctccccttctctcttttgaaccaaacatatatttaattaaaatat 13173378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 6707098 - 6707027
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    ||||| ||||||| | ||||| |||||| |||| |||| || ||| |||||||||||||| |||||||||||    
T  6707098 tggacctgcaatctaatggttgaaattatatcataaatatttgacattaaaaaactaacggaggggaccaaa 6707027  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 35734641 - 35734680
Alignment:
Q  238 cccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  35734641 cccttccctcccatcatttgaaccaaacatatatttaatt 35734680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 9473984 - 9474062
Alignment:
Q  29 taaacacagtggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggacca 107  Q
    |||||||| ||||||||||||| | | |||||||||| ||||||||| ||| || |||||||  ||| | |||||||||    
T  9473984 taaacacaatggacatgcaatcgaatagttaaaattatatcaaaaatattaaacattaaaaatttaatggaggggacca 9474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 28611265 - 28611371
Alignment:
Q  110 ttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaat 209  Q
    |||||| |||||||||||| | | |||||||||  |  ||||||| | |||||||||||||||| ||||    ||||| ||||  ||||||| |||||||    
T  28611265 ttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaat 28611364  T
Q  210 taagcct 216  Q
    |||||||    
T  28611365 taagcct 28611371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 10355687 - 10355650
Alignment:
Q  240 cttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  10355687 cttccctcccatcatttgaaccaaacatatatttaatt 10355650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28808741 - 28808704
Alignment:
Q  240 cttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  28808741 cttccctcccatcatttgaaccaaacatatatttaatt 28808704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 25569939 - 25569883
Alignment:
Q  40 gacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaac 96  Q
    |||||||||||||||||||||||| | ||||| |||  || || |||||||||||||    
T  25569939 gacatgcaatcaagtggttaaaatgatatcaagaataatatacattaaaaaactaac 25569883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 39919 - 39825
Alignment:
Q  118 cggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaa 212  Q
    |||||||||||| ||| |||   |||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||| |||||||||    
T  39919 cggagcaaaacaggagagactggaacgttgattttacaagttatgggaccaaaatgaaaataataaattacttaggggaccaaaagtccaattaa 39825  T

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Target: scaffold0155 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 28072 - 28004
Alignment:
Q  216 tttgattaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaattaaaatat 284  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  28072 tttgattaaaatctctcccgtccccttccctcccatcatttgaaccaaacatatatttaattgaaatat 28004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 168 - 225
Alignment:
Q  220 attaaaatccctcccctccccttccttcccatcatttgaaccaaacatatacttaatt 277  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  168 attaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaatt 225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 38715 - 38538
Alignment:
Q  38 tggacatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaattgactaacggagcaaaacaagagggac 137  Q
    |||||||||||||||  || ||| || | || ||||||||||  | |||||||||||||| |||||| ||| |||||| |||||| ||||| |  |||||    
T  38715 tggacatgcaatcaaacggctaatatcatataaaaaattttaatcattaaaaaactaacggaggggatcaatttgactgacggaggaaaaccaaggggac 38616  T
Q  138 caaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcc 215  Q
    ||||| ||   |||||| | |||||||||||||||| ||||    ||||| ||||| |||||||  ||||||||||||    
T  38615 caaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaagcc 38538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 11875 - 11807
Alignment:
Q  41 acatgcaatcaagtggttaaaattaaatcaaaaattttagacgttaaaaaactaacgtaggggaccaaa 109  Q
    |||||||||| | |||||||||| | ||||||||| |||||| |||||||||||||| || ||||||||    
T  11875 acatgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggagaggaccaaa 11807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 9933 - 9855
Alignment:
Q  139 aaaacgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttaggcgaccaaaaatccaattaagcctt 217  Q
    |||||| |||||||||||| |||| ||||||||||||||||  ||||||  |||| || ||||| ||||||||| ||||    
T  9933 aaaacgatgattttacgagctatgagaccaaaatgaaaacacgaaattaaataggggatcaaaagtccaattaaacctt 9855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 15908 - 15938
Alignment:
Q  155 gagttatgggaccaaaatgaaaacaacaaat 185  Q
    |||||||||||||||||||||||||||||||    
T  15908 gagttatgggaccaaaatgaaaacaacaaat 15938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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