View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9883_low_7 (Length: 342)
Name: NF9883_low_7
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9883_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 182 - 330
Target Start/End: Complemental strand, 4234556 - 4234409
Alignment:
| Q |
182 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcctttttc |
281 |
Q |
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| T |
4234556 |
ttaatacaatttttccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccc-atcaggcatagtcaccactctcattaggcctttttc |
4234458 |
T |
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| Q |
282 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtc |
330 |
Q |
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| T |
4234457 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtc |
4234409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 4234732 - 4234624
Alignment:
| Q |
8 |
aaggttccaaactcagaaaggtaaattaagttagatcaaaagaaaatggccacaaaaaataatgtttcacattgcaataaagcatagtaaaactgagttc |
107 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
4234732 |
aaggttccaaacttagaaaggtaaattaagtcaaatcaaaagaaaatggtcacaaaaaataatgtttcacatcgcaataaagcatagtaaaactcagttc |
4234633 |
T |
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| Q |
108 |
aatacgaca |
116 |
Q |
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| T |
4234632 |
aatacgaca |
4234624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 36513282 - 36513434
Alignment:
| Q |
182 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcctttttc |
281 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
36513282 |
ttaatccaatttttccatactggcaagcttctgaattttatttgttgcagacaaaccaccccc-atcag-catagtcaccactctcattaggcctttttc |
36513379 |
T |
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| Q |
282 |
ccaaagtcttgcttgtgg------gagtatccaccgagtcattagcattgatgtc |
330 |
Q |
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| T |
36513380 |
ccaaagtcttgcttgtgggagtatgagtatccaccgagtcattagcattgatgtc |
36513434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 36513045 - 36513116
Alignment:
| Q |
8 |
aaggttccaaactcagaaaggtaaattaagttagatcaaaagaaaatggccacaaaaaataatgtttcacat |
79 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
36513045 |
aaggttccaaactcagaaaggtaaattaattcagatcaaaagaaaatggccacaacaaataatgtttcacat |
36513116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 36513123 - 36513163
Alignment:
| Q |
63 |
aaaataatgtttcacattgcaataaagcatagtaaaactga |
103 |
Q |
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| T |
36513123 |
aaaataatgtttcacatcgcaataaagcatagtaaaactga |
36513163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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