View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9883_low_8 (Length: 323)

Name: NF9883_low_8
Description: NF9883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9883_low_8
NF9883_low_8
[»] chr4 (8 HSPs)
chr4 (34-307)||(49236589-49236864)
chr4 (161-214)||(20580088-20580141)
chr4 (164-222)||(13404205-13404263)
chr4 (162-222)||(51291126-51291186)
chr4 (162-221)||(48803895-48803953)
chr4 (162-208)||(949900-949946)
chr4 (162-235)||(25138920-25138993)
chr4 (161-213)||(32325285-32325337)
[»] chr7 (3 HSPs)
chr7 (162-221)||(37797976-37798035)
chr7 (163-221)||(8327836-8327894)
chr7 (163-208)||(46794953-46794998)
[»] chr1 (9 HSPs)
chr1 (166-224)||(44957040-44957098)
chr1 (165-220)||(9554085-9554140)
chr1 (162-220)||(48872202-48872260)
chr1 (163-244)||(29014515-29014595)
chr1 (172-221)||(40615971-40616020)
chr1 (169-216)||(5423758-5423805)
chr1 (171-208)||(14579451-14579488)
chr1 (161-218)||(29523567-29523624)
chr1 (167-216)||(40406247-40406295)
[»] chr3 (12 HSPs)
chr3 (168-224)||(53766697-53766753)
chr3 (161-238)||(50941718-50941795)
chr3 (161-235)||(4842635-4842708)
chr3 (161-235)||(4868331-4868404)
chr3 (161-231)||(26886053-26886123)
chr3 (161-218)||(7590728-7590785)
chr3 (162-231)||(22288471-22288540)
chr3 (162-231)||(22288757-22288826)
chr3 (161-231)||(25299034-25299104)
chr3 (163-235)||(39806802-39806872)
chr3 (172-208)||(8825242-8825278)
chr3 (172-208)||(47930131-47930167)
[»] chr2 (2 HSPs)
chr2 (161-216)||(3723400-3723455)
chr2 (162-209)||(36144078-36144125)
[»] chr8 (8 HSPs)
chr8 (162-221)||(35139030-35139089)
chr8 (167-216)||(18181238-18181287)
chr8 (161-222)||(18808772-18808833)
chr8 (166-210)||(36782781-36782825)
chr8 (169-220)||(8785291-8785342)
chr8 (169-223)||(1502675-1502729)
chr8 (162-220)||(28460000-28460058)
chr8 (161-221)||(39644140-39644200)
[»] chr5 (2 HSPs)
chr5 (163-224)||(20041620-20041681)
chr5 (168-208)||(22528751-22528791)
[»] scaffold0009 (1 HSPs)
scaffold0009 (162-221)||(168765-168824)
[»] chr6 (2 HSPs)
chr6 (162-237)||(16109366-16109440)
chr6 (162-220)||(5924769-5924827)
[»] scaffold0036 (1 HSPs)
scaffold0036 (162-220)||(88277-88335)
[»] scaffold0717 (1 HSPs)
scaffold0717 (161-214)||(4975-5028)
[»] scaffold0018 (1 HSPs)
scaffold0018 (161-214)||(67719-67772)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 49236589 - 49236864
Alignment:
Q  34 attaaaaacctggctagtagtctaaaaa---gagcattttgttaaaattaaaagtaaatgggtattgttaacgagtagcttcggtgcaatttttaggaat 130  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||| |    
T  49236589 attaaaaacctggctagtagtctaaataaacgagcattttgttaaaattaaaagtaaatgggtattgttaacgagtggcttcgatgcactctttagga-t 49236687  T
Q  131 ttttaatgaataaattattttnnnnnnnnngtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaa 230  Q
    ||||||||||||||||||| |          |||| | || |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||  ||||    
T  49236688 ttttaatgaataaattattctttaaaaaaaataaataatttaattttcaatacaataaatacacaaatttttataaaatattatcactttagatgcttaa 49236787  T
Q  231 aaaatatctcaaagcacctgttaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattat 307  Q
    | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49236788 agagtatctcaaagcacccgtcaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattat 49236864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 20580141 - 20580088
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 214  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  20580141 gtaaagacttcaatttccaatataataaatacataaactttcataaaatattac 20580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 13404205 - 13404263
Alignment:
Q  164 aagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 222  Q
    ||||||||||||| |||   |||||||||||||| ||||||||||| ||||||||||||    
T  13404205 aagacttcaatttccaacgtaataaatacataaactttcataaaatcttaccactttag 13404263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 51291126 - 51291186
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 222  Q
    ||||||||||||||| |||| |||||||| || ||| ||||||||||| |||||| |||||    
T  51291126 taaagacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttag 51291186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 48803953 - 48803895
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    ||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||| ||||    
T  48803953 taaagactttaattttcaatgcaataaata-acaaattttcataaaattttaccatttta 48803895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 949946 - 949900
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaa 208  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||    
T  949946 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaa 949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 25138993 - 25138920
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 235  Q
    |||| |||| ||||| |||| ||||||||  | |||||||||||||||  || |||||| ||||||||||||||    
T  25138993 taaaaactttaatttacaatgcaataaatgtacaaattttcataaaatcatatcacttttgatatttaaaaaat 25138920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 32325337 - 32325285
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatatta 213  Q
    |||||||||||| ||| |||||||||| ||||  ||| |||||||||||||||    
T  32325337 gtaaagacttcactttccaatacaatagatacgcaaactttcataaaatatta 32325285  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 37797976 - 37798035
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||    
T  37797976 taaagacttcaattttcaatataataaatgcataaattttcataaaatcttaccatttta 37798035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 8327894 - 8327836
Alignment:
Q  163 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    |||||||||||||| |||||||||||||||| ||| ||| ||||||| |||||| ||||    
T  8327894 aaagacttcaatttccaatacaataaatacacaaacttttataaaatcttaccatttta 8327836  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 46794998 - 46794953
Alignment:
Q  163 aaagacttcaattttcaatacaataaatacataaattttcataaaa 208  Q
    |||||||||||||||||||  ||||||| |||||||||| ||||||    
T  46794998 aaagacttcaattttcaatgtaataaatgcataaatttttataaaa 46794953  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 44957098 - 44957040
Alignment:
Q  166 gacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 224  Q
    ||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||    
T  44957098 gacttcaattttcaatacaataattgtataaattttcataaaatcttaccactttagat 44957040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 9554085 - 9554140
Alignment:
Q  165 agacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    |||||||||||||||||||| ||||| || ||| |||||||||||||||| |||||    
T  9554085 agacttcaattttcaatacattaaatgcacaaactttcataaaatattactacttt 9554140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 48872202 - 48872260
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    ||||||||||||||| ||||  ||||||| |||||| ||||||||||| ||||||||||    
T  48872202 taaagacttcaatttccaatgtaataaatgcataaactttcataaaatcttaccacttt 48872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 29014595 - 29014515
Alignment:
Q  163 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatctcaaag 244  Q
    ||||| ||||||||||||||||| ||||||||| ||||| ||||||| |||| || |||| |  |||||||||||| |||||    
T  29014595 aaagatttcaattttcaatacaa-aaatacatagattttaataaaatcttactacattaggtgcttaaaaaatatcacaaag 29014515  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 40615971 - 40616020
Alignment:
Q  172 aattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| |||||||    
T  40615971 aatttccaatacaataaatacacaaatttttataaaatattatcacttta 40616020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 5423805 - 5423758
Alignment:
Q  169 ttcaattttcaatacaataaatacataaattttcataaaatattacca 216  Q
    ||||||||||||| || ||||||||||| ||||||||||| |||||||    
T  5423805 ttcaattttcaatgcattaaatacataagttttcataaaaaattacca 5423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 14579488 - 14579451
Alignment:
Q  171 caattttcaatacaataaatacataaattttcataaaa 208  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  14579488 caatttttaatacaataaatacataacttttcataaaa 14579451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 29523624 - 29523567
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 218  Q
    ||||| |||||||||| |||| ||||||||||| ||| ||||||| ||| ||||||||    
T  29523624 gtaaaaacttcaatttccaatgcaataaatacacaaactttcatacaatcttaccact 29523567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 40406247 - 40406295
Alignment:
Q  167 acttcaattttcaatacaataaatacataaattttcataaaatattacca 216  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  40406247 acttcaattttcaatacaat-aatacacaaactttcataaaatcttacca 40406295  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 53766753 - 53766697
Alignment:
Q  168 cttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 224  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  53766753 cttcaattttcaatgcaataaatacacaaactttcataaaatattaccattttagat 53766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 50941718 - 50941795
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatc 238  Q
    ||||| |||||||||| |||| |||||||| || ||| ||||||||||| |||||||| ||| | |||||||||||||    
T  50941718 gtaaaaacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccactgtaggtctttaaaaaatatc 50941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 4842708 - 4842635
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 235  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| ||||||||||||||  |||||||||    
T  4842708 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgcttaaaaaat 4842635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 4868404 - 4868331
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 235  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| |||||||||||||| ||| ||||||    
T  4868404 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgtttgaaaaat 4868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 26886123 - 26886053
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 231  Q
    ||||| |||||||||||||||||||| ||| || ||| ||||||||||  |||||||||| ||| ||||||    
T  26886123 gtaaaaacttcaattttcaatacaatgaatgcacaaactttcataaaaacttaccactttggatgtttaaa 26886053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 7590728 - 7590785
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 218  Q
    ||||| |||| ||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  7590728 gtaaatactttaatttccaatacaataaatacacaaactttcataaaatcttaccact 7590785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 22288540 - 22288471
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 231  Q
    |||||| |||||||||||||| ||||||| || ||| ||||||||||| |||||| ||| |||| |||||    
T  22288540 taaagatttcaattttcaatataataaatgcacaaactttcataaaatcttaccattttggatacttaaa 22288471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 22288826 - 22288757
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 231  Q
    |||||| || |||||| |||| ||||||| || ||||||||||||||| |||||| ||| ||||||||||    
T  22288826 taaagattttaatttttaatataataaatgcacaaattttcataaaatcttaccattttggatatttaaa 22288757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 25299104 - 25299034
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 231  Q
    ||||||| ||||||||||||| |||||||| || ||| ||||||||||| |||  ||||||| | ||||||    
T  25299104 gtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatcttattactttaggtgtttaaa 25299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 39806802 - 39806872
Alignment:
Q  163 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 235  Q
    ||||| |||||||||||||  ||||||| || ||||||||  |||||||||||||||| |||  |||||||||    
T  39806802 aaagatttcaattttcaatgtaataaatgcacaaattttc--aaaatattaccactttggatgcttaaaaaat 39806872  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 8825278 - 8825242
Alignment:
Q  172 aattttcaatacaataaatacataaattttcataaaa 208  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  8825278 aattttcaatacactaaatacatgaattttcataaaa 8825242  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 47930131 - 47930167
Alignment:
Q  172 aattttcaatacaataaatacataaattttcataaaa 208  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  47930131 aattttcaatacattaaatacacaaattttcataaaa 47930167  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 3723400 - 3723455
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattacca 216  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  3723400 gtaaagacttcaattttcaatgcaataaatacacaaattttcgtaaaatcttacca 3723455  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 36144078 - 36144125
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaat 209  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||    
T  36144078 taaagacttcaatttccaattcaataaatacacaatttttcataaaat 36144125  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 35139089 - 35139030
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||||||  |||||||    
T  35139089 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaatattttcacttta 35139030  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 18181287 - 18181238
Alignment:
Q  167 acttcaattttcaatacaataaatacataaattttcataaaatattacca 216  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  18181287 acttcaattttcaatgcaataaatacacaaactttcataaaagattacca 18181238  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 18808833 - 18808772
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 222  Q
    ||||||||||||||||  ||| |||||||| |||||| ||||||||||| |||||| |||||    
T  18808833 gtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttag 18808772  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 36782825 - 36782781
Alignment:
Q  166 gacttcaattttcaatacaataaatacataaattttcataaaata 210  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||    
T  36782825 gacttcaattttcaatacaataaatgcacaaactttcataaaata 36782781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 8785342 - 8785291
Alignment:
Q  169 ttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    |||||||| |||| ||||||||||| ||| ||||||||||| ||||||||||    
T  8785342 ttcaatttccaatgcaataaatacacaaaatttcataaaatcttaccacttt 8785291  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 1502729 - 1502675
Alignment:
Q  169 ttcaattttcaatacaataaatacataaattttcataaaatattaccactttaga 223  Q
    ||||||||||||| || |||||||  |||||||||||||| ||||| ||||||||    
T  1502729 ttcaattttcaatgcattaaatacgcaaattttcataaaaaattactactttaga 1502675  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 28460058 - 28460000
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    ||||||||||||||| |||| |||||||| || ||| ||| ||||||| ||||||||||    
T  28460058 taaagacttcaatttccaatgcaataaatgcacaaactttaataaaatcttaccacttt 28460000  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 39644200 - 39644140
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    ||||||||| |||||| |||||||||| ||  | ||| ||| |||||||||||||||||||    
T  39644200 gtaaagactacaatttccaatacaatagatgtacaaacttttataaaatattaccacttta 39644140  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 20041681 - 20041620
Alignment:
Q  163 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 224  Q
    |||||||||||||| |||| |||||||| ||||||||||| |||||| ||| || |||||||    
T  20041681 aaagacttcaatttccaatgcaataaatgcataaattttcgtaaaattttatcattttagat 20041620  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 22528791 - 22528751
Alignment:
Q  168 cttcaattttcaatacaataaatacataaattttcataaaa 208  Q
    ||||||||| | ||||| |||||||||||||||||||||||    
T  22528791 cttcaatttccgatacattaaatacataaattttcataaaa 22528751  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 168824 - 168765
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 221  Q
    ||||||||| ||||| ||||| ||||||| || ||| ||||||||||| |||||||||||    
T  168824 taaagactttaatttccaatataataaatgcacaaactttcataaaatcttaccacttta 168765  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 16109440 - 16109366
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatat 237  Q
    ||||||||||||||  |||| ||||||||  |||||||||  |||||| |||||||||||||| |||||| |||||    
T  16109440 taaagacttcaattc-caatgcaataaatgtataaatttttttaaaatgttaccactttagatgtttaaacaatat 16109366  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 5924769 - 5924827
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    |||||| || |||||||||||||||| || || ||| ||||||||||| ||||||||||    
T  5924769 taaagattttaattttcaatacaatatatgcacaaactttcataaaattttaccacttt 5924827  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 88277 - 88335
Alignment:
Q  162 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 220  Q
    |||| |||| ||||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  88277 taaaaactttaatttccaatataataaatgcacaaactttcataaaatattaccacttt 88335  T

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Target: scaffold0717 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 5028 - 4975
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 214  Q
    |||||||||||||||| |||||||| |||| |||||| |||||| |||| ||||    
T  5028 gtaaagacttcaatttccaatacaaaaaatgcataaactttcattaaatgttac 4975  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 67719 - 67772
Alignment:
Q  161 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 214  Q
    ||||||| || ||||| ||| |||||||||||| ||| ||||||||||||||||    
T  67719 gtaaagattttaatttccaaaacaataaatacacaaactttcataaaatattac 67772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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