View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_high_1 (Length: 854)
Name: NF9884_high_1
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 256 - 812
Target Start/End: Original strand, 20433845 - 20434401
Alignment:
| Q |
256 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20433845 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcactgtttccacaatccaa |
20433944 |
T |
|
| Q |
356 |
aaatccccttcaacccaatccctagcttcatctgaatcaaccctaggcagccacttagctcggcgactagtggaagtcggtatcaccgacatcttcaccg |
455 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20433945 |
aaatccccctcaacccaatccctagcttcatctgaatcaaccctaggcagccacttagctcggcgactagtggaagtcggtatcaccgacatcttcaccg |
20434044 |
T |
|
| Q |
456 |
tccctggtgacttcaacttgacgttgctcgaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgc |
555 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434045 |
tccctggtgacttcaacctgacgttgctcgaccacttgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgc |
20434144 |
T |
|
| Q |
556 |
tgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgag |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434145 |
tgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgag |
20434244 |
T |
|
| Q |
656 |
aatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccagg |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20434245 |
aatttgccagtgatttgtattgttggtggaccaaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccagg |
20434344 |
T |
|
| Q |
756 |
aacttaggtgtttccagactgttacttgctatcaggtccaaatctcaactcaatctc |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20434345 |
aacttaggtgtttccagactgttacttgctaccaggtccaaatctcaactcaatctc |
20434401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 20433604 - 20433753
Alignment:
| Q |
19 |
caataataattagcaaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatg---tttcctctctcccaagttaa-nnnnnnnaac |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
20433604 |
caataataattagcaaaaacagaaaacagcacctagtaatatgacccacaatatctcatattaatgtaatttcctctctcccaagttaattttttttaac |
20433703 |
T |
|
| Q |
115 |
ctctctgccaagtaaacaataaatctccctactataaattctctccatct |
164 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20433704 |
ctctctcccaagtaaacaataaatctccctactataaattctctccatct |
20433753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 256 - 812
Target Start/End: Original strand, 5329735 - 5330291
Alignment:
| Q |
256 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacaccttcatcaaacggcaatgtttccacaatccaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5329735 |
caacatggacacaaacctaggatccctcgaagcatgcaaatcaccatgcaacgacataataacaacacctacatcaaacggcactgtttccacaatccaa |
5329834 |
T |
|
| Q |
356 |
aaatccccttcaacccaatccctagcttcatctgaatcaaccctaggcagccacttagctcggcgactagtggaagtcggtatcaccgacatcttcaccg |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329835 |
aaatccccttcaacccaatccctagcttcatctgaatcaaccctaggcagccacttagctcggcgactagtggaagtcggtatcaccgacatcttcaccg |
5329934 |
T |
|
| Q |
456 |
tccctggtgacttcaacttgacgttgctcgaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgc |
555 |
Q |
| |
|
||||||||||||||||| | || |||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5329935 |
tccctggtgacttcaaccttacattgctcgatcacctcatcgctgaaccgaagttgaaaaacatcggttgctgtaatgaactgaatgctggatatgctgc |
5330034 |
T |
|
| Q |
556 |
tgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgag |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330035 |
tgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgag |
5330134 |
T |
|
| Q |
656 |
aatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccagg |
755 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330135 |
aatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgattttagccagg |
5330234 |
T |
|
| Q |
756 |
aacttaggtgtttccagactgttacttgctatcaggtccaaatctcaactcaatctc |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5330235 |
aacttaggtgtttccagactgttacttgctatcaggtccaaatctcaactcaatctc |
5330291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 5329496 - 5329641
Alignment:
| Q |
19 |
caataataattagcaaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaannnnnnnaacctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5329496 |
caataataattagcaaaaacagaaaaccgcacctagtaatatgacccacaatatctcatattaatgtttcctctctcccaagttaatttttttaacctct |
5329595 |
T |
|
| Q |
119 |
ctgccaagtaaacaataaatctccctactataaattctctccatct |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5329596 |
ctgccaagtaaacaataaatctccctactataaattctctcaatct |
5329641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 499 - 792
Target Start/End: Original strand, 25603853 - 25604146
Alignment:
| Q |
499 |
tgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgtt |
598 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| || |||||||| ||||| |||||||| ||||| |||| | || || || |||||||||||| |
|
|
| T |
25603853 |
tgaaccggagctgaacctcatcggttgctgtaacgagctaaatgctggttatgcggctgatggttatgctcggtcacgtggcgtcggtgcttgtgttgtt |
25603952 |
T |
|
| Q |
599 |
acatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatg |
698 |
Q |
| |
|
|| || |||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
25603953 |
actttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgtattgttggtggacccaattctaatg |
25604052 |
T |
|
| Q |
699 |
attttgggactaatagaattcttcatcatactattggtttgcctgattttagccaggaacttaggtgtttccagactgttacttgctatcaggt |
792 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||||||| | ||||||||||| ||||| | |||||||| || ||||||||||||| |||||| |
|
|
| T |
25604053 |
attatgggactagtaggattcttcatcatactattggtgttcctgattttagtcaggagttgaggtgttttcaaactgttacttgctttcaggt |
25604146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 398 - 735
Target Start/End: Original strand, 25622965 - 25623302
Alignment:
| Q |
398 |
ctaggcagccacttagctcggcgactagtggaagtcggtatcaccgacatcttcaccgtccctggtgacttcaacttgacgttgctcgaccacctgatcg |
497 |
Q |
| |
|
|||||| ||||| |||| ||| | ||||| ||||||| |||| ||||| ||| |||| ||||||||||||||| | ||| | |||||| |||| |||| |
|
|
| T |
25622965 |
ctaggccgccacctagcacggaggctagttcaagtcggcgtcacggacattttctccgttcctggtgacttcaacctcacgctactcgactacctcatcg |
25623064 |
T |
|
| Q |
498 |
ctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgt |
597 |
Q |
| |
|
|||||| || || || |||||||| |||||||| || ||||| || || || || ||||| ||||| |||| | || || ||||||||||| || |
|
|
| T |
25623065 |
atgaaccaaaacttaatgtaatcggttgttgtaacgagctcaatgcaggttacgcagccgatggttatgctcggtcatgtggcgtcggagcttgtgtggt |
25623164 |
T |
|
| Q |
598 |
tacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaat |
697 |
Q |
| |
|
|| || |||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||| | ||||| || |||||||||||||| || ||| |
|
|
| T |
25623165 |
aactttcactgttggtgggttgagtgttcttaatgctatagctggtgcttatagtgagaatttgccgcttatttgcatcgttggtggacctaactccaat |
25623264 |
T |
|
| Q |
698 |
gattttgggactaatagaattcttcatcatactattgg |
735 |
Q |
| |
|
|||| ||| | ||| || |||||||||||||||||||| |
|
|
| T |
25623265 |
gattatggaagtaacaggattcttcatcatactattgg |
25623302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 485 - 748
Target Start/End: Original strand, 4624678 - 4624941
Alignment:
| Q |
485 |
gaccacctgatcgctgaaccgaagctgaaaaacatcggttgctgtaacgaacttaatgctggatatgctgctgatggatatgcaaggtctagaggtgtgg |
584 |
Q |
| |
|
||||||||||||||||| ||| |||| || |||||||||||||||| || |||||||||||||||||||| || || ||| | | | || || | |
|
|
| T |
4624678 |
gaccacctgatcgctgagccggagcttaaccttgtcggttgctgtaacgagctgaatgctggatatgctgctgacggttacgcacgtgccaagggagttg |
4624777 |
T |
|
| Q |
585 |
gagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattgctggtgcttatagtgagaatttgccagtgatttgtattgttggtgg |
684 |
Q |
| |
|
| || |||||||| || ||||| || ||||| | ||| | | || || ||||| || ||||| ||||| || ||||| ||||||||||||||||| || |
|
|
| T |
4624778 |
gcgcgtgtgttgtgacttttacagtcggtggacttagtatcctcaacgccattgccggagcttacagtgaaaacttgccggtgatttgtattgttggagg |
4624877 |
T |
|
| Q |
685 |
acctaattctaatgattttgggactaatagaattcttcatcatactattggtttgcctgatttt |
748 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4624878 |
acctaattctaatgactatggtactaacagaattcttcatcatactattggtttacctgatttt |
4624941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 760
Target Start/End: Original strand, 1877568 - 1877789
Alignment:
| Q |
539 |
aatgctggatatgctgctgatggatatgcaaggtctagaggtgtgggagcttgtgttgttacatttactgttggtgggttaagtgtgattaatgcaattg |
638 |
Q |
| |
|
|||||||| ||||| ||||||||||||| || | ||||||||| || || ||||||||||| |||| |||||| || | || | ||||||| |||| |
|
|
| T |
1877568 |
aatgctggttatgccactgatggatatgctagatgtagaggtgttggtgcatgtgttgttacttttaatgttggcggacttagcattcttaatgctattg |
1877667 |
T |
|
| Q |
639 |
ctggtgcttatagtgagaatttgccagtgatttgtattgttggtggacctaattctaatgattttgggactaatagaattcttcatcatactattggttt |
738 |
Q |
| |
|
||||| |||||||||| || | ||| | || || |||||||||| || ||||| ||||||||||| | ||| | ||||| |||||||| |||||||| |
|
|
| T |
1877668 |
ctggttcttatagtgaagatcttccaattatatgcattgttggtgccccaaattccaatgattttggaagtaacaagattctccatcataccattggttt |
1877767 |
T |
|
| Q |
739 |
gcctgattttagccaggaactt |
760 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
1877768 |
acctgattttagtcaggaactt |
1877789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University