View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_17 (Length: 351)
Name: NF9884_high_17
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 190122 - 189790
Alignment:
| Q |
1 |
catataagaattagtatattcactatcttaccaagagtgagctaagaattcttaagctcgatttatctctatgttttttaaatgatttttgctcattttt |
100 |
Q |
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| T |
190122 |
catataagaattagtatattcactatcttaccaagggtgagctaagaattcttaagctcgttttatctctatgttttttaaatgatttttgctcattttt |
190023 |
T |
|
| Q |
101 |
caggtttaaaaattagtctttccaagtccataacatatgcttctggcgatttgagtagtaccgtcaaaggggagcttaagatagcaaacattaagttcac |
200 |
Q |
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| T |
190022 |
caggtttaaaaattagtctttccaagtccataacatatgcttctggcgatttgagtagtaccgtcaaaggggagcttgagatagcaaacattaagttcac |
189923 |
T |
|
| Q |
201 |
taataaacttgaatagtatttgggatttcaaaatgcactatagaatgactattagagaggtaattcatggaggtttgtgataaagtggcgtctaagctcg |
300 |
Q |
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| T |
189922 |
taataaacttgaatagtatttgggatttcaaaatgcactatagaatgactattagagaggtaatccatggaggtttgtgataaagtggtgtctaagctcg |
189823 |
T |
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| Q |
301 |
cttcatagaaaggtaaactccttaataaattgg |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
189822 |
cttcatagaaaggtaaactccttaataaattgg |
189790 |
T |
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