View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_high_18 (Length: 340)

Name: NF9884_high_18
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_high_18
NF9884_high_18
[»] chr2 (40 HSPs)
chr2 (161-277)||(9169408-9169525)
chr2 (118-277)||(4778540-4778702)
chr2 (179-277)||(12648075-12648174)
chr2 (182-277)||(43397271-43397366)
chr2 (119-204)||(28871988-28872072)
chr2 (240-277)||(29279721-29279758)
chr2 (240-277)||(31128930-31128967)
chr2 (161-277)||(4098934-4099052)
chr2 (178-277)||(24461287-24461385)
chr2 (161-277)||(36943274-36943392)
chr2 (161-270)||(7646303-7646415)
chr2 (161-220)||(37994106-37994165)
chr2 (185-277)||(38445022-38445115)
chr2 (243-277)||(4904296-4904330)
chr2 (179-277)||(7448097-7448196)
chr2 (200-277)||(10237364-10237441)
chr2 (240-277)||(1421587-1421624)
chr2 (240-277)||(4041745-4041782)
chr2 (240-277)||(11985381-11985418)
chr2 (179-270)||(18763317-18763409)
chr2 (240-277)||(19062503-19062540)
chr2 (240-275)||(11833396-11833431)
chr2 (240-270)||(7678029-7678059)
chr2 (118-218)||(20145914-20146016)
chr2 (118-219)||(29574842-29574943)
chr2 (240-277)||(4264384-4264421)
chr2 (240-277)||(14423234-14423271)
chr2 (240-277)||(19596027-19596064)
chr2 (240-277)||(28227836-28227873)
chr2 (240-277)||(29574784-29574821)
chr2 (240-277)||(30400188-30400225)
chr2 (240-277)||(31788368-31788405)
chr2 (161-218)||(36175652-36175709)
chr2 (240-277)||(36691786-36691822)
chr2 (240-277)||(37876748-37876785)
chr2 (179-219)||(37876807-37876848)
chr2 (181-220)||(7678086-7678126)
chr2 (240-272)||(16261275-16261307)
chr2 (243-271)||(26025528-26025556)
chr2 (240-272)||(29173875-29173907)
[»] chr4 (31 HSPs)
chr4 (168-277)||(19853662-19853772)
chr4 (179-277)||(22611043-22611142)
chr4 (161-277)||(5119179-5119298)
chr4 (179-277)||(21686391-21686490)
chr4 (161-277)||(2520618-2520736)
chr4 (161-273)||(9178198-9178312)
chr4 (179-277)||(26633821-26633920)
chr4 (179-277)||(4142905-4143004)
chr4 (179-277)||(56040794-56040896)
chr4 (179-277)||(22558614-22558715)
chr4 (180-277)||(35348166-35348264)
chr4 (240-275)||(43095552-43095587)
chr4 (240-275)||(54021783-54021818)
chr4 (179-277)||(13633973-13634074)
chr4 (241-273)||(9165196-9165228)
chr4 (179-277)||(24099220-24099321)
chr4 (200-277)||(26091064-26091141)
chr4 (243-275)||(29120515-29120547)
chr4 (161-220)||(36204589-36204648)
chr4 (232-275)||(43444324-43444367)
chr4 (243-277)||(52978749-52978783)
chr4 (240-277)||(9713829-9713866)
chr4 (240-277)||(27651869-27651906)
chr4 (240-277)||(36161633-36161670)
chr4 (240-277)||(43510121-43510158)
chr4 (240-273)||(52944233-52944266)
chr4 (161-217)||(2437493-2437549)
chr4 (240-276)||(9634596-9634632)
chr4 (240-276)||(9643302-9643338)
chr4 (243-275)||(37188707-37188739)
chr4 (240-272)||(40066210-40066242)
[»] chr6 (20 HSPs)
chr6 (161-277)||(12170317-12170435)
chr6 (160-277)||(30608664-30608781)
chr6 (161-277)||(33053318-33053436)
chr6 (161-277)||(68151-68268)
chr6 (160-274)||(30894457-30894573)
chr6 (161-277)||(606026-606144)
chr6 (240-274)||(11321622-11321656)
chr6 (118-204)||(32191957-32192043)
chr6 (240-277)||(34018463-34018500)
chr6 (241-277)||(3913724-3913760)
chr6 (240-277)||(7515351-7515388)
chr6 (184-217)||(7976376-7976409)
chr6 (240-277)||(23128521-23128558)
chr6 (240-277)||(24227861-24227898)
chr6 (240-277)||(26588618-26588655)
chr6 (240-277)||(28981079-28981116)
chr6 (240-277)||(32059810-32059847)
chr6 (240-277)||(32327367-32327404)
chr6 (109-219)||(1523177-1523289)
chr6 (161-220)||(32328791-32328851)
[»] chr3 (41 HSPs)
chr3 (161-277)||(10232891-10233009)
chr3 (161-277)||(21431446-21431563)
chr3 (161-277)||(47895972-47896090)
chr3 (161-277)||(9998287-9998406)
chr3 (179-277)||(10108077-10108175)
chr3 (183-277)||(43488740-43488835)
chr3 (179-277)||(52923267-52923365)
chr3 (179-277)||(6954846-6954946)
chr3 (179-277)||(54148827-54148927)
chr3 (240-277)||(1649321-1649358)
chr3 (161-277)||(10229295-10229415)
chr3 (161-277)||(21533959-21534076)
chr3 (161-220)||(40556532-40556592)
chr3 (185-277)||(9797679-9797774)
chr3 (161-220)||(20465176-20465235)
chr3 (232-274)||(40957007-40957049)
chr3 (240-277)||(20609040-20609077)
chr3 (240-277)||(23800059-23800096)
chr3 (240-277)||(35865084-35865121)
chr3 (240-277)||(36910791-36910828)
chr3 (109-204)||(953632-953728)
chr3 (119-217)||(38142349-38142449)
chr3 (238-277)||(7546511-7546550)
chr3 (240-275)||(33579769-33579804)
chr3 (240-271)||(37040673-37040704)
chr3 (232-277)||(629056-629101)
chr3 (240-277)||(7449052-7449089)
chr3 (240-277)||(7457194-7457231)
chr3 (240-277)||(18010920-18010957)
chr3 (240-277)||(24176251-24176288)
chr3 (240-277)||(29921954-29921991)
chr3 (240-277)||(29971107-29971144)
chr3 (240-277)||(36461581-36461618)
chr3 (240-277)||(45568594-45568631)
chr3 (179-276)||(47042203-47042302)
chr3 (240-277)||(53508122-53508159)
chr3 (243-275)||(2342419-2342451)
chr3 (231-271)||(32607383-32607423)
chr3 (240-268)||(40487226-40487254)
chr3 (184-216)||(42456264-42456296)
chr3 (241-277)||(50194434-50194470)
[»] chr7 (22 HSPs)
chr7 (174-277)||(28476059-28476161)
chr7 (161-277)||(47590137-47590252)
chr7 (161-277)||(48316962-48317080)
chr7 (179-274)||(37837612-37837708)
chr7 (182-277)||(19404905-19405001)
chr7 (161-276)||(30756970-30757087)
chr7 (240-277)||(24770158-24770195)
chr7 (179-277)||(35132792-35132891)
chr7 (179-277)||(48061263-48061364)
chr7 (186-277)||(34899757-34899850)
chr7 (240-277)||(40993086-40993123)
chr7 (161-274)||(42978431-42978547)
chr7 (232-273)||(44311951-44311992)
chr7 (179-277)||(1749294-1749391)
chr7 (109-275)||(9450289-9450458)
chr7 (168-277)||(22742768-22742878)
chr7 (240-275)||(49148244-49148279)
chr7 (243-277)||(12141457-12141491)
chr7 (179-220)||(19296719-19296761)
chr7 (240-277)||(24350994-24351031)
chr7 (240-277)||(39328943-39328980)
chr7 (240-277)||(48930683-48930720)
[»] chr5 (27 HSPs)
chr5 (187-277)||(8096648-8096738)
chr5 (161-219)||(35850605-35850663)
chr5 (161-277)||(7036048-7036166)
chr5 (161-277)||(26878229-26878346)
chr5 (240-277)||(6216800-6216837)
chr5 (240-277)||(11977087-11977124)
chr5 (240-277)||(15571387-15571424)
chr5 (161-277)||(38007178-38007294)
chr5 (240-276)||(4771041-4771077)
chr5 (161-277)||(13007049-13007167)
chr5 (161-277)||(26825249-26825369)
chr5 (179-277)||(31391906-31392007)
chr5 (187-277)||(34945268-34945360)
chr5 (161-277)||(38597618-38597735)
chr5 (179-277)||(2979463-2979562)
chr5 (161-277)||(9113875-9113993)
chr5 (175-220)||(7930029-7930075)
chr5 (243-277)||(14082520-14082554)
chr5 (184-277)||(14211076-14211168)
chr5 (232-277)||(8088363-8088408)
chr5 (240-277)||(14726612-14726649)
chr5 (240-277)||(24229935-24229972)
chr5 (240-277)||(28541063-28541100)
chr5 (240-277)||(39567196-39567233)
chr5 (240-277)||(41749223-41749260)
chr5 (237-277)||(9267778-9267818)
chr5 (185-217)||(41630350-41630382)
[»] chr8 (21 HSPs)
chr8 (109-275)||(31013721-31013890)
chr8 (179-277)||(29937956-29938055)
chr8 (240-277)||(14545050-14545087)
chr8 (179-219)||(14916344-14916384)
chr8 (119-277)||(40211453-40211615)
chr8 (240-277)||(7883388-7883425)
chr8 (232-273)||(20227438-20227479)
chr8 (179-270)||(20553401-20553493)
chr8 (240-277)||(27110612-27110649)
chr8 (240-277)||(36948586-36948623)
chr8 (179-277)||(7677429-7677528)
chr8 (181-273)||(3673289-3673381)
chr8 (191-277)||(40619221-40619307)
chr8 (119-216)||(17693824-17693922)
chr8 (243-277)||(26469345-26469379)
chr8 (240-277)||(14585603-14585640)
chr8 (240-277)||(20559894-20559931)
chr8 (240-277)||(20571456-20571493)
chr8 (240-277)||(23230548-23230585)
chr8 (240-277)||(28897615-28897652)
chr8 (184-220)||(24099468-24099504)
[»] chr1 (31 HSPs)
chr1 (119-277)||(1742062-1742222)
chr1 (172-277)||(45415394-45415501)
chr1 (200-277)||(23291793-23291870)
chr1 (161-277)||(29738786-29738904)
chr1 (118-273)||(10776612-10776772)
chr1 (114-277)||(15435023-15435188)
chr1 (161-277)||(15836017-15836134)
chr1 (150-277)||(8212060-8212189)
chr1 (118-277)||(34878422-34878583)
chr1 (240-274)||(26535299-26535333)
chr1 (175-277)||(31984018-31984122)
chr1 (240-277)||(7337813-7337850)
chr1 (240-277)||(13144962-13144999)
chr1 (240-277)||(21947768-21947805)
chr1 (240-277)||(31918894-31918931)
chr1 (240-277)||(35484541-35484578)
chr1 (161-204)||(3228094-3228137)
chr1 (240-274)||(27456446-27456480)
chr1 (240-274)||(50377230-50377264)
chr1 (240-277)||(940269-940306)
chr1 (240-277)||(11462597-11462634)
chr1 (240-277)||(15492195-15492232)
chr1 (244-277)||(27580277-27580310)
chr1 (240-277)||(31317655-31317692)
chr1 (240-277)||(32394903-32394940)
chr1 (240-277)||(35462187-35462224)
chr1 (240-277)||(48750093-48750130)
chr1 (240-277)||(51916802-51916839)
chr1 (243-271)||(11453870-11453898)
chr1 (245-277)||(12635076-12635108)
chr1 (232-275)||(39888088-39888132)
[»] scaffold0049 (1 HSPs)
scaffold0049 (182-277)||(71435-71529)
[»] scaffold0445 (1 HSPs)
scaffold0445 (161-277)||(1165-1282)
[»] scaffold0088 (1 HSPs)
scaffold0088 (179-277)||(50625-50725)
[»] scaffold0017 (1 HSPs)
scaffold0017 (172-277)||(32898-33005)
[»] scaffold0492 (1 HSPs)
scaffold0492 (161-277)||(12737-12854)
[»] scaffold0127 (1 HSPs)
scaffold0127 (179-267)||(15331-15420)
[»] scaffold0064 (1 HSPs)
scaffold0064 (161-220)||(19245-19304)
[»] scaffold0603 (1 HSPs)
scaffold0603 (240-277)||(7617-7654)
[»] scaffold0136 (2 HSPs)
scaffold0136 (240-277)||(10191-10228)
scaffold0136 (240-277)||(37948-37985)
[»] scaffold0888 (1 HSPs)
scaffold0888 (168-277)||(1825-1935)
[»] scaffold0026 (2 HSPs)
scaffold0026 (161-218)||(72074-72132)
scaffold0026 (240-277)||(72014-72051)
[»] scaffold0009 (1 HSPs)
scaffold0009 (179-277)||(58230-58329)
[»] scaffold0554 (1 HSPs)
scaffold0554 (240-277)||(10778-10815)
[»] scaffold0262 (1 HSPs)
scaffold0262 (240-277)||(1968-2005)
[»] scaffold0121 (1 HSPs)
scaffold0121 (240-277)||(31420-31457)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 9169525 - 9169408
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataag 258  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| | || ||   ||||  ||  |||||||||||||||||||    
T  9169525 tttctcattcgtttatcgaggaggggtggttttaggtcatttttgacctagaatcacccctc-tacatttttttttcccttttctttcaatctaaataag 9169427  T
Q  259 tggttttcacatatatcaa 277  Q
    |||||||||||| ||||||    
T  9169426 tggttttcacatctatcaa 9169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 277
Target Start/End: Original strand, 4778540 - 4778702
Alignment:
Q  118 ctagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatc 215  Q
    |||||||||||| | |||||||||||  |||||| |||  ||  |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||    
T  4778540 ctagttttttagtgggagaaactccaacttctttctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatc 4778639  T
Q  216 accccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| | || |||  ||||  ||  |||||||||| |||||||||||||||||||| ||||||    
T  4778640 acccctc-tacatctttttttcccttttctttcaatttaaataagtggttttcacatctatcaa 4778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 12648174 - 12648075
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctc-cttctttcaatctaaataagtggttttcacatatatca 276  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |  | |||  |||||||  ||||||||||||||||||||| ||| |||||||||||    
T  12648174 aggaggggtggttttaggtcattttttgacctagaatcacccctc-cacatcttttttctcttttctttcaatctaaataagtgatttccacatatatca 12648076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 43397366 - 43397271
Alignment:
Q  182 aggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||| ||||| |||||||||||||| | | || |||  ||| |   ||||||||||||||||||||||||||||||||||||||    
T  43397366 aggggtggttttaggtcattttttgacctagaatcacctctc-tacatctttttcccttttctttcaatctaaataagtggttttcacatatatcaa 43397271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 28872072 - 28871988
Alignment:
Q  119 tagttttttagcgagagaaactccacattcttttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt 204  Q
    ||||||||||| ||||||||||||||||||| |  | ||| |||||||||||||| ||| |||| | ||||||||||||| |||||    
T  28872072 tagttttttagtgagagaaactccacattctctcta-atttttttctcattcattcatcgaggatgagtggttttaggtctttttt 28871988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 29279758 - 29279721
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29279758 ttctttcaatctaaataagtggttttcacatatatcaa 29279721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 31128967 - 31128930
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31128967 ttctttcaatctaaataagtggttttcacatatatcaa 31128930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 4098934 - 4099052
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||| |||||| |||||||| ||||| |||||||||||||||  | || |||  ||||| ||||  ||||||||||||||||    
T  4098934 tttctctttccttcatcgaggaagggtggctttaggtcattttttgacctagaatcacccatc-tacatcttttttccccttttctttcaatctaaataa 4099032  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  4099033 gtggttttcacatctatcaa 4099052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 24461287 - 24461385
Alignment:
Q  178 aaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||||||||||||||  |||||||||||||||||| || | |  |||  |||||| ||| |||||||||||||||||| ||| |||||||||||    
T  24461287 aaggaggggtggttttaggtcattttttgacctagaatcactcctc-tgcatccgttttct-cttttttcaatctaaataagtgatttccacatatatca 24461384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 36943392 - 36943274
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | | || |||  |||||  |  ||||||||||||||||||    
T  36943392 tttctccttcgttgatcgaggaggggtggttttaggtcattttttgacctagaatcaccactc-tacatcttttttcctcttttctttcaatctaaataa 36943294  T
Q  258 gtggttttcacatatatcaa 277  Q
    || |||||||||| ||||||    
T  36943293 gtagttttcacatctatcaa 36943274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 7646303 - 7646415
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc---ttctttcaatctaaata 256  Q
    |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||  ||   ||||||| |||||||||    
T  7646303 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatctttttttccccttttctttcgatctaaata 7646401  T
Q  257 agtggttttcacat 270  Q
    ||||||||||||||    
T  7646402 agtggttttcacat 7646415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 37994106 - 37994165
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcacccc 220  Q
    |||||| |||| | ||| |||| ||||||||||||||| |||||||||||||||||||||    
T  37994106 tttctctttcaatcatcgaggaagggtggttttaggtcatttttgacctagaatcacccc 37994165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 38445022 - 38445115
Alignment:
Q  185 ggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||| ||||||| ||||||||||||| | || |||  ||||| | ||  |||||||| |||||||||||||||||||| ||||||    
T  38445022 ggtggttttaggtcatttttgatctagaatcacccctc-tacatcttttttccctttttctttcaatataaataagtggttttcacatctatcaa 38445115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 4904330 - 4904296
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||||||||||    
T  4904330 tttcaatctaaataagtggttttcacatatatcaa 4904296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 7448097 - 7448196
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||||| ||||| | |||||||||||||| | || |||  ||||| ||||  |||||||||||||||| |||||||||||| ||||    
T  7448097 aggaggggtggttttaggtcattttttgtcctagaatcacccctc-tacatct-ttttccccttttctttcaatctaaataaatggttttcacatctatc 7448194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 10237441 - 10237364
Alignment:
Q  200 tttttgacctagaatcaccccacatatatcaattttctcc-ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| | || |||  ||||| || ||||||||||||||||||||| |||||||||| |||||    
T  10237441 tttttgacctagaatcacccctc-tacatcttttttcccctttctttcaatctaaataagtgattttcacatacatcaa 10237364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 1421587 - 1421624
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1421587 ttctttcaatctaaataagtggttttcacatctatcaa 1421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 4041782 - 4041745
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4041782 ttctttcaatctaaataagtggttttcacatctatcaa 4041745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 11985418 - 11985381
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11985418 ttctttcaatttaaataagtggttttcacatatatcaa 11985381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 18763317 - 18763409
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacat 270  Q
    ||||| |||||||||| ||| ||||| |||||||||||||||| | || |||  ||||| | || |||||||||||||||||||||||||||||    
T  18763317 aggagaggtggttttatgtcattttttgacctagaatcacccctc-tacatcttttttcccttttctttcaatctaaataagtggttttcacat 18763409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 19062540 - 19062503
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  19062540 ttctttcaatctaaataagtggttttcacatctatcaa 19062503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 11833396 - 11833431
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||| |||||||||||||||||||||||||    
T  11833396 ttctttcaatttaaataagtggttttcacatatatc 11833431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 7678059 - 7678029
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacat 270  Q
    |||||||||||||||||||||||||||||||    
T  7678059 ttctttcaatctaaataagtggttttcacat 7678029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 20146016 - 20145914
Alignment:
Q  118 ctagttttttagcgagagaaactccacattct-tttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttt-ttgacctagaatc 215  Q
    |||||||||||| |||||||||| |||||||| |||||| |   |||||  |||| | ||||||||||||  |||||||||| ||| ||||| |||||||    
T  20146016 ctagttttttagtgagagaaacttcacattctctttaagttatctttcttcttcactcatcaaggaggggcagttttaggtcatttattgacatagaatc 20145917  T
Q  216 acc 218  Q
    |||    
T  20145916 acc 20145914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 29574943 - 29574842
Alignment:
Q  118 ctagttttttagcgagagaaactccacattcttttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatca 216  Q
    |||||||||||| ||||||||||| |  |||||| ||| ||  |||||| |||| |  || ||||||||||||||||| || ||||| ||||||||||||    
T  29574943 ctagttttttagtgagagaaactctaacttcttt-aagttttatttctctttcactcgtcgaggaggggtggttttagatcattttttgacctagaatca 29574845  T
Q  217 ccc 219  Q
    |||    
T  29574844 ccc 29574842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 4264384 - 4264421
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  4264384 ttcttttaatttaaataagtggttttcacatatatcaa 4264421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 14423234 - 14423271
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||| || ||||||||||||    
T  14423234 ttctttcaatctaaataagtgggttccacatatatcaa 14423271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 19596064 - 19596027
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  19596064 ttctttcaatgtaaataagtgattttcacatatatcaa 19596027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28227873 - 28227836
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  28227873 ttctttcaatctaaataagtgattttcacaaatatcaa 28227836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 29574821 - 29574784
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  29574821 ttctttcaatctaaataagtgatttccacatatatcaa 29574784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 30400225 - 30400188
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  30400225 ttcttttaatctaaataagtgtttttcacatatatcaa 30400188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 31788368 - 31788405
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  31788368 ttctttcaatctaaataagtgattttcacatctatcaa 31788405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 36175709 - 36175652
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcacc 218  Q
    |||||| |||||| |||||| || |||||||||||||| ||||||||| | |||||||    
T  36175709 tttctccttcattcatcaagaagaggtggttttaggtcatttttgaccgataatcacc 36175652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 36691786 - 36691822
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36691786 ttctttcaatctaaataagtgg-tttcacatatatcaa 36691822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 37876785 - 37876748
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  37876785 ttcttttaatctaaataagtggttttcacatctatcaa 37876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 37876848 - 37876807
Alignment:
Q  179 aggaggggtggttttaggtcg-tttttgacctagaatcaccc 219  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  37876848 aggaggggtggttttaggtcaatttttgacctagaatcaccc 37876807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 7678126 - 7678086
Alignment:
Q  181 gaggggtggttttaggtcgttttt-gacctagaatcacccc 220  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  7678126 gaggggtggttttaggtcattttttgacctagaatcacccc 7678086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 16261275 - 16261307
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatat 272  Q
    ||||||||||||||||||||||||| |||||||    
T  16261275 ttctttcaatctaaataagtggtttccacatat 16261307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 26025556 - 26025528
Alignment:
Q  243 tttcaatctaaataagtggttttcacata 271  Q
    |||||||||||||||||||||||||||||    
T  26025556 tttcaatctaaataagtggttttcacata 26025528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 29173907 - 29173875
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatat 272  Q
    ||||||||||| |||||||||||||||||||||    
T  29173907 ttctttcaatccaaataagtggttttcacatat 29173875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 19853772 - 19853662
Alignment:
Q  168 ttcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggtttt 265  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||||||| | || |||  ||||| ||  ||||| ||||||||||||||||||||    
T  19853772 ttcattcatcgaggaggggtggttttaggtcatttttgacctagaatcacccctc-tacatcttttttccccttttcttccaatctaaataagtggtttt 19853674  T
Q  266 cacatatatcaa 277  Q
    ||||| ||||||    
T  19853673 cacatctatcaa 19853662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 22611043 - 22611142
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  || |||  ||||| ||  ||||||||||||||||||||||||||||||| |||||    
T  22611043 aggaggggtggttttaggtcatttttgacctagaatca-cccatctacatcttttttccccttttctttcaatctaaataagtggttttcacatctatca 22611141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 5119179 - 5119298
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttg--acctagaatcaccccacatatatcaattttctcct--tctttcaatctaaata 256  Q
    |||||| |||||| |||||||||||||||||||| ||| |||||   ||||||||||||||| | || |||  ||| | |||  ||||||||||||||||    
T  5119179 tttctccttcattcatcaaggaggggtggttttatgtcattttttttacctagaatcacccctc-tacatctttttccccctcttctttcaatctaaata 5119277  T
Q  257 agtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||    
T  5119278 agtggttttcacatatatcaa 5119298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 21686490 - 21686391
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||||||| ||||| ||||||||||| ||||||||| | || |||  ||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  21686490 aggaggggtggtttgaggtcttttttgacctaaaatcacccctc-tacatcttttttccccttttctttcaatctaaataagtggttttcacatctatca 21686392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 2520618 - 2520736
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||| ||  ||| ||||||||||||||    
T  2520618 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatcttttttccccttttcgttcaatctaaataa 2520716  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  2520717 gtggttttcacatctatcaa 2520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 9178198 - 9178312
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc---ttctttcaatctaaata 256  Q
    |||||| |||||| |||||||||||||||| |||||||  ||||||||||||||||||||  | || |||  ||||||||   |||||||||||||||||    
T  9178198 tttctccttcattcatcaaggaggggtggtcttaggtcattttttgacctagaatcacccttc-tacatc-tttttctcccttttctttcaatctaaata 9178295  T
Q  257 agtggttttcacatata 273  Q
    | |||||||||||||||    
T  9178296 aatggttttcacatata 9178312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 26633920 - 26633821
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||  ||| |||  ||| ||| || ||||||||||||||||||||||||||||| |||||    
T  26633920 aggaggggtggtcttaggtcattttttgacctagaatcacccct-atacatctttttcctcttttctttcaatctaaataagtggttttcacatctatca 26633822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 4143004 - 4142905
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  4143004 aggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataagt-gttttcacatctatc 4142907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 56040896 - 56040794
Alignment:
Q  179 aggaggggtggttttaggtcgttttt--gacctagaatcaccccacatatatcaatttt---ctccttctttcaatctaaataagtggttttcacatata 273  Q
    ||||| |||||||||||||| |||||  |||||||||||||||| | || |||  ||||   || |||||||||||||||||||||||||||||||| ||    
T  56040896 aggagaggtggttttaggtcatttttttgacctagaatcacccctc-tacatcttttttccccttcttctttcaatctaaataagtggttttcacatcta 56040798  T
Q  274 tcaa 277  Q
    ||||    
T  56040797 tcaa 56040794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 22558715 - 22558614
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt---ctttcaatctaaataagtggttttcacatatat 274  Q
    |||||||||||||||||||| ||||| ||| |||||||||| | | || |||  ||||| ||||   ||||||||||||||||||||||||||||| |||    
T  22558715 aggaggggtggttttaggtcattttttgacatagaatcacctctc-tacatcttttttcccctttttctttcaatctaaataagtggttttcacatctat 22558617  T
Q  275 caa 277  Q
    |||    
T  22558616 caa 22558614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 35348166 - 35348264
Alignment:
Q  180 ggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||| ||||||||| ||||| |||||||||||||| | | || |||  ||||| | || |||||||||||||||||||||||||||| |||||||    
T  35348166 ggaggggtgattttaggtcattttttgacctagaatcacctctc-tacatcttttttcccttttctttcaatctaaataagtggttttcacaaatatcaa 35348264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 43095552 - 43095587
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  43095552 ttctttcaatctaaataagtggttttcacatatatc 43095587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 54021783 - 54021818
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  54021783 ttctttcaatctaaataagtggttttcacatatatc 54021818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 13633973 - 13634074
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc------ttctttcaatctaaataagtggttttcacatat 272  Q
    ||||| |||||||||||||| |||||||| |||||||||||| | || |||  ||||| ||      ||||||||||||||||||||||||||||||| |    
T  13633973 aggagtggtggttttaggtcatttttgacatagaatcacccctc-tacatc--ttttccccccccttttctttcaatctaaataagtggttttcacatct 13634069  T
Q  273 atcaa 277  Q
    |||||    
T  13634070 atcaa 13634074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 9165228 - 9165196
Alignment:
Q  241 tctttcaatctaaataagtggttttcacatata 273  Q
    |||||||||||||||||||||||||||||||||    
T  9165228 tctttcaatctaaataagtggttttcacatata 9165196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 24099321 - 24099220
Alignment:
Q  179 aggaggggtggttttaggtcgttttt--gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatat 274  Q
    ||||| |||||||||||||| |||||  |||||||||||| ||| | || |||  ||||| ||||  ||||||||||||||||||| ||||||||| |||    
T  24099321 aggagaggtggttttaggtcatttttttgacctagaatcatccctc-tacatcttttttccccttttctttcaatctaaataagtgattttcacatctat 24099223  T
Q  275 caa 277  Q
    |||    
T  24099222 caa 24099220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 26091141 - 26091064
Alignment:
Q  200 tttttgacctagaatcaccccacatatatcaattttctccttct--ttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| | || |||  |||||||||| |  |||||||||||||||||||||||||||| |||||    
T  26091141 tttttgacctagaatcacccctc-ta-atcttttttctccttttatttcaatctaaataagtggttttcacataaatcaa 26091064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 29120547 - 29120515
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||||||||||||||||||    
T  29120547 tttcaatctaaataagtggttttcacatatatc 29120515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 36204648 - 36204589
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcacccc 220  Q
    |||||| |||| | |||||||| || |||||||||||| ||||| |||||||||||||||    
T  36204648 tttctctttcaatcatcaaggatggatggttttaggtcattttttacctagaatcacccc 36204589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 43444324 - 43444367
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||| || |||||||||||||||||| ||||||||||||||    
T  43444324 ttttctctttatttcaatctaaataagtgattttcacatatatc 43444367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 52978749 - 52978783
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||| ||||||||||||||||    
T  52978749 tttcaatctaaataagtgattttcacatatatcaa 52978783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 9713829 - 9713866
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  9713829 ttctttcaatctaaataagtgatttccacatatatcaa 9713866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 27651869 - 27651906
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  27651869 ttctttcaatctaaataagtgattttcacatacatcaa 27651906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 36161633 - 36161670
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  36161633 ttctttcaatctaaataagtgatttttacatatatcaa 36161670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 43510121 - 43510158
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  43510121 ttctttcaatctaaataagtggctttcacatttatcaa 43510158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 52944233 - 52944266
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatata 273  Q
    ||||||||||||||||||||| ||||||||||||    
T  52944233 ttctttcaatctaaataagtgattttcacatata 52944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 2437549 - 2437493
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcac 217  Q
    |||||| ||||||||||||  | | ||||||||||||| ||||||||||| ||||||    
T  2437549 tttctccttcatttatcaaatatgagtggttttaggtcatttttgacctataatcac 2437493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 9634596 - 9634632
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatca 276  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  9634596 ttctttcgatctaaataagtgattttcacatatatca 9634632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 9643302 - 9643338
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatca 276  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  9643302 ttctttcgatctaaataagtgattttcacatatatca 9643338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 37188739 - 37188707
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||| ||||||||||||||    
T  37188739 tttcaatctaaataagtgattttcacatatatc 37188707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 40066242 - 40066210
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatat 272  Q
    |||||||||| ||||||||||||||||||||||    
T  40066242 ttctttcaatataaataagtggttttcacatat 40066210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 12170317 - 12170435
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||||||||||||||||||| ||||| |||||||||||||||| | || |||  ||||| ||||  ||||||||||||||||    
T  12170317 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataa 12170415  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  12170416 gtggttttcacatctatcaa 12170435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 30608781 - 30608664
Alignment:
Q  160 ttttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    ||||||| |||||  || ||||| || |||||||||||| ||||||||||||||||||||| | || || | ||||||||||  |||||||||||||| |    
T  30608781 ttttctccttcatccattaaggatggatggttttaggtcatttttgacctagaatcacccctc-tacat-atttttctccttttctttcaatctaaatta 30608684  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||    
T  30608683 gtggttttcacatatatcaa 30608664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 33053436 - 33053318
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||||||||||||||||||| ||||| |||||||||||| ||| | || |||  ||||| ||||  ||||||||||||||||    
T  33053436 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcatccctc-tacatcttttttccccttttctttcaatctaaataa 33053338  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  33053337 gtggttttcacatctatcaa 33053318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 68268 - 68151
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataag 258  Q
    |||||| ||| || ||| ||||||| |||||||||||  |||||||||||||||||||||   || |||  ||||| ||  |||||| ||||||||||||    
T  68268 tttctccttcgttcatcgaggagggatggttttaggtaatttttgacctagaatcaccccctctacatc-tttttccccttttcttttaatctaaataag 68170  T
Q  259 tggttttcacatatatcaa 277  Q
    |||||||||||| ||||||    
T  68169 tggttttcacatctatcaa 68151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 30894457 - 30894573
Alignment:
Q  160 ttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaata 256  Q
    ||||||| ||| || ||| ||||||||||||||||| || ||||| |||||||||||||||| | || |||  ||||  ||||  |||||||||||||||    
T  30894457 ttttctccttcgttaatcgaggaggggtggttttagatcattttttgacctagaatcacccctc-tacatctgtttttcccttttctttcaatctaaata 30894555  T
Q  257 agtggttttcacatatat 274  Q
    | ||||||||||||||||    
T  30894556 actggttttcacatatat 30894573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 606026 - 606144
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||||||||| ||||| ||| ||||| ||||||| |||||||| | || |||  ||||| ||||  ||||||||||||||||    
T  606026 tttctccttcgttcatcgaggaggggtgattttatgtcattttttgacctaggatcacccctc-tacatcttttttccccttttctttcaatctaaataa 606124  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  606125 gtggttttcacatctatcaa 606144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 11321656 - 11321622
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatat 274  Q
    |||||||||||||||||||||||||||||||||||    
T  11321656 ttctttcaatctaaataagtggttttcacatatat 11321622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 32192043 - 32191957
Alignment:
Q  118 ctagttttttagcgagagaaactccacattcttttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt 204  Q
    |||||||||||| ||||||||||| |  ||  | |||| ||  |||||| |||||| |||||||||||||||||||||||| |||||    
T  32192043 ctagttttttagagagagaaactctaattttgtctaagttttctttctctttcattcatcaaggaggggtggttttaggtccttttt 32191957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 34018463 - 34018500
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34018463 ttctttcaatttaaataagtggttttcacatatatcaa 34018500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 3913760 - 3913724
Alignment:
Q  241 tctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||||| ||||||    
T  3913760 tctttcaatctaaataagtggttttcacatctatcaa 3913724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 7515388 - 7515351
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  7515388 ttcttccaatctaaataagtggttttcacatctatcaa 7515351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 7976409 - 7976376
Alignment:
Q  184 gggtggttttaggtcgtttttgacctagaatcac 217  Q
    ||||||||||||||| ||||||||||||||||||    
T  7976409 gggtggttttaggtcatttttgacctagaatcac 7976376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 23128521 - 23128558
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  23128521 ttctttcattctaaataagtggttttcacatctatcaa 23128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 24227898 - 24227861
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||  |||||||||||||||||||||||||||    
T  24227898 ttctttcaacttaaataagtggttttcacatatatcaa 24227861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 26588655 - 26588618
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26588655 ttcttttaatctaaataagtggtttccacatatatcaa 26588618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 28981079 - 28981116
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  28981079 ttctttcaatctaaataagtgatttccacatatatcaa 28981116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 32059810 - 32059847
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  32059810 ttctttcaatctaaataagtagttttcacatgtatcaa 32059847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 32327404 - 32327367
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  32327404 ttctttcaatataaataagtggttttcacatctatcaa 32327367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 1523177 - 1523289
Alignment:
Q  109 tagtgggctctagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtcg-tttttga 206  Q
    |||| ||| ||| |||| ||| ||||||||||| ||||||| | |||| ||  |||||| ||||   || ||||||||||| |||||||||  |||||||    
T  1523177 tagtcggccctaattttatagtgagagaaactctacattctctctaagttttatttctctttcacacatgaaggaggggtgattttaggtcaatttttga 1523276  T
Q  207 cctagaatcaccc 219  Q
    |||||||||||||    
T  1523277 cctagaatcaccc 1523289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 32328851 - 32328791
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcacccc 220  Q
    |||||| ||| || ||| |||||||||||||||| ||| |||||||||||| |||||||||    
T  32328851 tttctccttcgttcatcgaggaggggtggttttaagtcagtttttgacctataatcacccc 32328791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 10232891 - 10233009
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| ||| || ||||||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||| ||  ||||||||||||||||||    
T  10232891 tttctccttcgttcatcaaggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataa 10232989  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||| | ||||||    
T  10232990 gtggttttcacgtctatcaa 10233009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 21431446 - 21431563
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctc--cttctttcaatctaaataag 258  Q
    |||||| ||| || ||| |||||||||||||||||||| ||||||||||| ||||||||| | || |||  ||||| |   |||||||||||||||||||    
T  21431446 tttctccttcgttcatcgaggaggggtggttttaggtcatttttgacctaaaatcacccctc-tacatcttttttcccattttctttcaatctaaataag 21431544  T
Q  259 tggttttcacatatatcaa 277  Q
    |||||||||||| ||||||    
T  21431545 tggttttcacatctatcaa 21431563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 47895972 - 47896090
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| ||||||||||||| ||| || ||||| |||||||||||||||| | || |||  ||||||| ||  ||||||||||||||||    
T  47895972 tttctccttcgttcatcgaggaggggtggttatagatcattttttgacctagaatcacccctc-tacatcttttttctctttttctttcaatctaaataa 47896070  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||    
T  47896071 gtggttttcacatatatcaa 47896090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 9998287 - 9998406
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc--gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaata 256  Q
    |||||| ||| || ||| ||||||||||||||||||||   ||||||||||||||||||||| | || |||  ||||| ||  |||||||||||||||||    
T  9998287 tttctccttcgttcatcgaggaggggtggttttaggtcatttttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaata 9998385  T
Q  257 agtggttttcacatatatcaa 277  Q
    |||||||||||| | ||||||    
T  9998386 agtggttttcacgtctatcaa 9998406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 10108077 - 10108175
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatca 276  Q
    ||||||||||||||||||||  |||||||||||||||||||| | || |||  ||||| ||  ||||||||||||||||||||||||||||| | |||||    
T  10108077 aggaggggtggttttaggtc-attttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataagtggttttcacgtctatca 10108174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 43488835 - 43488740
Alignment:
Q  183 ggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||| |||||||| ||||||||||||||||||||| | || |||  ||||| | ||  ||||||||||||||||||||||||||||| ||||||    
T  43488835 ggggtgggtttaggtcttttttgacctagaatcacccctc-tacatcttttttccctttttctttcaatctaaataagtggttttcacatctatcaa 43488740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 52923365 - 52923267
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| ||| |||||| ||| ||||||||||||||||||||| | || |||  ||||| | || ||||||||||||||||||||||||||||| ||||||    
T  52923365 aggagaggtagttttaagtcatttttgacctagaatcacccctc-tacatcttttttcccttttctttcaatctaaataagtggttttcacatctatcaa 52923267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 6954946 - 6954846
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| | || |||  ||||| ||||  |||||||||||||||||||| |||||||| ||||    
T  6954946 aggaggggtgattttaggtcattttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataagtgggtttcacatctatc 6954848  T
Q  276 aa 277  Q
    ||    
T  6954847 aa 6954846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 54148827 - 54148927
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||||| ||||| |||||| ||||||||| | || |||  |||||  |||  ||||||||||||||||||||||||||||| ||||    
T  54148827 aggaggggtggttttaggtcattttttgacctacaatcacccctc-tacatcttttttcctcttttctttcaatctaaataagtggttttcacatctatc 54148925  T
Q  276 aa 277  Q
    ||    
T  54148926 aa 54148927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 1649321 - 1649358
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1649321 ttctttcaatctaaataagtggttttcacatatatcaa 1649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 10229295 - 10229415
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt---gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaat 255  Q
    |||||| ||| || ||| |||||||||||||||||||| |||||   |||||||||||||| | | || |||  ||||| ||||  ||||||||||||||    
T  10229295 tttctccttctttcatcgaggaggggtggttttaggtcttttttttggacctagaatcaccactc-tacatcttttttccccttttctttcaatctaaat 10229393  T
Q  256 aagtggttttcacatatatcaa 277  Q
    ||||||||||||| | ||||||    
T  10229394 aagtggttttcacgtctatcaa 10229415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 21534076 - 21533959
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaatttt--ctc-cttctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||| ||||||||||||||| ||||||||||||||||||||| | || |||  ||||  |||  ||||| ||||||||||||    
T  21534076 tttctccttcgttaatcgaggatgggtggttttaggtc-tttttgacctagaatcacccctc-tacatctttttttcctcttttcttccaatctaaataa 21533979  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  21533978 gtggttttcacatctatcaa 21533959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 40556532 - 40556592
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcacccc 220  Q
    |||||||||| || ||| ||||||||||||||||||||  |||||||||||||||||||||    
T  40556532 tttctcattcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccc 40556592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 9797774 - 9797679
Alignment:
Q  185 ggtggttttaggtcgttttt-gacctagaatcaccccac-atatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||| ||||| |||||||||||||||| | | || |   ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  9797774 ggtggttttaggtcattttttgacctagaatcacccctctacatcttttttttctcttttctttcaatctaaataagtggttttcacatctatcaa 9797679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 20465235 - 20465176
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcacccc 220  Q
    |||||| |||||| |||||| ||||||||||||| ||| |||||||| ||||||||||||    
T  20465235 tttctccttcattcatcaagtaggggtggttttatgtcatttttgacatagaatcacccc 20465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 40957049 - 40957007
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatatat 274  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  40957049 ttttctctttctttcaatctaaataagtggtttttacatatat 40957007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 20609077 - 20609040
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20609077 ttctttcaatctaaataagtggttttaacatatatcaa 20609040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 23800096 - 23800059
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23800096 ttctttcaatctaaataagtggtttttacatatatcaa 23800059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 35865121 - 35865084
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35865121 ttctttcaatctaaataagtagttttcacatatatcaa 35865084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 36910828 - 36910791
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  36910828 ttctttcaatctaaataagtggttttcacatctatcaa 36910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 953728 - 953632
Alignment:
Q  109 tagtgggctctagttttttagcgagagaaactccacattct-tttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt 204  Q
    |||| |||||||||||| ||| ||||||||||||||||||| | |||| ||  |||||| |||||| ||  |||||  ||||||||||||| |||||    
T  953728 tagtcggctctagttttatagtgagagaaactccacattctctctaagttttctttctccttcattcattgaggagaagtggttttaggtctttttt 953632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 38142349 - 38142449
Alignment:
Q  119 tagttttttagcgagagaaactccacattc-ttttaagattcttttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatca 216  Q
    ||||||||||| |||||||||||||||||| ||||||| ||  |||||| |||||| |||||| | | ||| |||||| ||  ||||||||||| |||||    
T  38142349 tagttttttagtgagagaaactccacattctttttaagttttctttctctttcattcatcaagaatgagtgattttagttcattttttgacctaaaatca 38142448  T
Q  217 c 217  Q
    |    
T  38142449 c 38142449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 7546511 - 7546550
Alignment:
Q  238 ccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  7546511 ccttctttcaatctaaataagtgattttcacatacatcaa 7546550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 33579769 - 33579804
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33579769 ttctttcaatctaaataagtgattttcacatatatc 33579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Original strand, 37040673 - 37040704
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacata 271  Q
    ||||||||||||||||||||||||||||||||    
T  37040673 ttctttcaatctaaataagtggttttcacata 37040704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 629101 - 629056
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| ||||||||| ||||||||||||| |||||||| |||||||    
T  629101 ttttccccttctttcgatctaaataagtgattttcacaaatatcaa 629056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 7449089 - 7449052
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  7449089 ttctttcaatctaaataagtggttttcgcatctatcaa 7449052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 7457231 - 7457194
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  7457231 ttctttcaatctaaataagtggttttcgcatctatcaa 7457194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 18010920 - 18010957
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  18010920 ttctttcgatctaaaaaagtggttttcacatatatcaa 18010957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 24176288 - 24176251
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  24176288 ttctttcaatctaaataattgggtttcacatatatcaa 24176251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 29921954 - 29921991
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  29921954 ttctttcaatctaaataagtgatttccacatatatcaa 29921991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 29971107 - 29971144
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  29971107 ttctttcaatctaaataagtgatttccacatatatcaa 29971144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 36461618 - 36461581
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  36461618 ttctttcaatctaaataagtgattttcacatctatcaa 36461581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 45568631 - 45568594
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  45568631 ttctttcaatctaaataagttgttttcacatctatcaa 45568594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 47042302 - 47042203
Alignment:
Q  179 aggaggggtggttttaggtcgtttttga-cctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||||| ||||| | |||| ||||||||| | || |||  ||||  ||||  |||||||| |||||||||| ||||||||||||||    
T  47042302 aggaggggtggttttaggtcattttttaacctataatcacccctc-tacatctttttttcccttttctttcaatttaaataagtgattttcacatatatc 47042204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 53508122 - 53508159
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  53508122 ttctttcaatataaataagtgattttcacatatatcaa 53508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 2342419 - 2342451
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||| ||||||||||||||    
T  2342419 tttcaatctaaataagtgattttcacatatatc 2342451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 32607383 - 32607423
Alignment:
Q  231 attttctccttctttcaatctaaataagtggttttcacata 271  Q
    |||||||| || |||||||||||||||||| ||||||||||    
T  32607383 attttctctttatttcaatctaaataagtgattttcacata 32607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 40487226 - 40487254
Alignment:
Q  240 ttctttcaatctaaataagtggttttcac 268  Q
    |||||||||||||||||||||||||||||    
T  40487226 ttctttcaatctaaataagtggttttcac 40487254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 42456296 - 42456264
Alignment:
Q  184 gggtggttttaggtcgtttttgacctagaatca 216  Q
    ||||||||||||||| |||||||||||||||||    
T  42456296 gggtggttttaggtcttttttgacctagaatca 42456264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 50194470 - 50194434
Alignment:
Q  241 tctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  50194470 tctttcaatctaaataagtgatttccacatatatcaa 50194434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 28476059 - 28476161
Alignment:
Q  174 tatcaaggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacata 271  Q
    |||| |||||||||| |||||||||  ||||||||||||||||||||| ||||| |   |||||||||| ||||||||||||||||||| ||||||||||    
T  28476059 tatcgaggaggggtgattttaggtcaatttttgacctagaatcaccccgcatattt---ttttctcctttctttcaatctaaataagtgattttcacata 28476155  T
Q  272 tatcaa 277  Q
     |||||    
T  28476156 catcaa 28476161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 47590137 - 47590252
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagtg 260  Q
    |||||||||| || ||  |||||||||| ||||||||| ||||||| ||||||||||||| | || ||   ||| |   |||||||||||||||||||||    
T  47590137 tttctcattcgttcatagaggaggggtgattttaggtcatttttgaactagaatcacccctc-tacatttttttccctattctttcaatctaaataagtg 47590235  T
Q  261 gttttcacatatatcaa 277  Q
    |||||||||||||||||    
T  47590236 gttttcacatatatcaa 47590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 48317080 - 48316962
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| ||| || |||||||||||||||||||||||| ||||| |||||||||||||||| | || |||  ||| | ||  |||||||||| |||||||    
T  48317080 tttctccttcgttcatcaaggaggggtggttttaggtcatttttggacctagaatcacccctc-tacatctttttcccccttttctttcaatttaaataa 48316982  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  48316981 gtggttttcacatctatcaa 48316962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 37837708 - 37837612
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatat 274  Q
    |||||||||||||||||||| ||||| |||||||||||||||| | || |||  ||||| | || ||||||||||||||||||||||| |||||||||    
T  37837708 aggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatcttttttcccttttctttcaatctaaataagtggtttacacatatat 37837612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 19405001 - 19404905
Alignment:
Q  182 aggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||| ||||| |||||||||||||||| | || |||  |||| |||||  |||||||||||||||||||||||||||||| |||||    
T  19405001 aggggtggttttaggtcattttttgacctagaatcacccctc-tacatctttttt-tccttttctttcaatctaaataagtggttttcacataaatcaa 19404905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 30757087 - 30756970
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||||||||||||||||||  ||||| |||||||||||||||| | || |||  ||||| ||||  ||||||||||||||||    
T  30757087 tttctctttcgttcatcgaggaggggtggttttaggtaattttttgacctagaatcacccctc-tacatcttttttccccttttctttcaatctaaataa 30756989  T
Q  258 gtggttttcacatatatca 276  Q
    ||| ||||||||| |||||    
T  30756988 gtgattttcacatctatca 30756970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 24770158 - 24770195
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24770158 ttctttcaatctaaataagtggttttcacatatatcaa 24770195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 35132792 - 35132891
Alignment:
Q  179 aggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcc-ttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||| |||||||||  ||||||||||||||||||||| | || |||  ||||| || |||||| |||||||||||||| |||||||||| ||||    
T  35132792 aggaggggtgattttaggtcaatttttgacctagaatcacccctc-tacatcttttttcccctttcttttaatctaaataagtgattttcacatacatca 35132890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 48061263 - 48061364
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt---ctttcaatctaaataagtggttttcacatatat 274  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||| || ||   ||||| ||||   ||||||||||||||||||||||||||||| |||    
T  48061263 aggagaggtggttttaggtcattttttgacttagaatcaccccac-tacatattttttcccctttttctttcaatctaaataagtggttttcacatctat 48061361  T
Q  275 caa 277  Q
    |||    
T  48061362 caa 48061364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 34899850 - 34899757
Alignment:
Q  186 gtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||| |||||||||||||||| | || |||  ||||  ||||  ||||||||||||||||||||||||||||| ||||||    
T  34899850 gtggttttaggtcattttttgacctagaatcacccctc-tacatctttttttcccttttctttcaatctaaataagtggttttcacatctatcaa 34899757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 40993086 - 40993123
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  40993086 ttctttcaatctaaataagtggttttcacatctatcaa 40993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 42978431 - 42978547
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc----ttctttcaatctaaat 255  Q
    |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||||| | | || |||  ||||||||    |||  |||||||||||    
T  42978431 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcaccactc-tacatc-tttttctccccttttcgatcaatctaaat 42978528  T
Q  256 aagtggttttcacatatat 274  Q
    |||||||||||||||||||    
T  42978529 aagtggttttcacatatat 42978547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 44311992 - 44311951
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatata 273  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  44311992 ttttctctttctttcaatctaaataagtggtttccacatata 44311951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 1749391 - 1749294
Alignment:
Q  179 aggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||  ||||||||||||||||||||    |  |||  ||||| | ||||||||||||||||||||| |||||||||| |||||    
T  1749391 aggaggggtgattttaggtcaatttttgacctagaatcacccgc--ttcatcttttttccctttctttcaatctaaataagtgattttcacatacatcaa 1749294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 275
Target Start/End: Complemental strand, 9450458 - 9450289
Alignment:
Q  109 tagtgggctctagttttttagcgagagaaactccacattcttttaagattct-tttctcattcatttatcaaggaggggtggttttaggtcgttttt-ga 206  Q
    |||| ||| ||| |||| ||| |||||||||||||  ||||||| | | | | |||||| ||| || ||| ||||||| |||||||||||| ||||| ||    
T  9450458 tagtcggccctaattttctagtgagagaaactccaacttctttttaaactttctttctccttcgttcatcgaggagggatggttttaggtcattttttga 9450359  T
Q  207 cctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||| ||||  || |||   |||| ||  ||||||||||||||||||||| ||||||||| ||||    
T  9450358 cctagaatca-cccatctacatcttgtttccccttttctttcaatctaaataagtgattttcacatctatc 9450289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 22742768 - 22742878
Alignment:
Q  168 ttcatttatcaaggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggtttt 265  Q
    |||||| ||| |||||||||| |||||||||  ||||| | ||||||||||||| | |  |||  ||||| |||| ||||||||||||||||||| ||||    
T  22742768 ttcattcatcgaggaggggtgattttaggtcaatttttaatctagaatcacccctc-tgcatcttttttcccctttctttcaatctaaataagtgatttt 22742866  T
Q  266 cacatatatcaa 277  Q
    |||||| |||||    
T  22742867 cacatacatcaa 22742878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 49148279 - 49148244
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatc 275  Q
    ||||||||| ||||||||||||||||||||||||||    
T  49148279 ttctttcaaactaaataagtggttttcacatatatc 49148244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 12141491 - 12141457
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||| ||||||    
T  12141491 tttcaatctaaataagtggttttcacatctatcaa 12141457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 19296719 - 19296761
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcacccc 220  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  19296719 aggaggggtggttttaggtcattttttgacctagaatcacccc 19296761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 24351031 - 24350994
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  24351031 ttctttcaatctaaataagtgattttcacatacatcaa 24350994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 39328980 - 39328943
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  39328980 ttctttcaatttaaataagtggttttcacacatatcaa 39328943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 48930683 - 48930720
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  48930683 ttctttcaatctaaataagtgattttcacatacatcaa 48930720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 8096738 - 8096648
Alignment:
Q  187 tggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||| ||||||||||||||||||||| | ||| ||  ||||| | || ||||||||||||||||||||||||||||||||||||    
T  8096738 tggttttaggtcatttttgacctagaatcacccctc-tatttcttttttcccttttctttcaatctaaataagtggttttcacatatatcaa 8096648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 35850605 - 35850663
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccc 219  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  35850605 tttctcattcgtttatcgaggaggggtggttttaggtcttttttgacctagaatcaccc 35850663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 7036048 - 7036166
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| |||||| ||||||| |||||||||||||||| ||||| |||||| |||||| |  | || |||  |||||  |||  ||||||||||||||||    
T  7036048 tttctccttcattcatcaaggtggggtggttttaggtcattttttgacctaaaatcactcatc-tacatcttttttcctcttttctttcaatctaaataa 7036146  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||    
T  7036147 gtggttttcacatatatcaa 7036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 26878346 - 26878229
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataag 258  Q
    |||||| |||||| ||| ||||| |||||||||| ||| ||||||| ||||||||||| | | || |||  ||| | ||||  |||||||||||||||||    
T  26878346 tttctccttcattcatcgaggagaggtggttttatgtcatttttgatctagaatcacctctc-tacatctttttcccccttttctttcaatctaaataag 26878248  T
Q  259 tggttttcacatatatcaa 277  Q
    ||||||||||||| |||||    
T  26878247 tggttttcacataaatcaa 26878229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 6216800 - 6216837
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6216800 ttctttcaatctaaataagtggttttcacatatatcaa 6216837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 11977124 - 11977087
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11977124 ttctttcaatctaaataagtggttttcacatatatcaa 11977087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 15571387 - 15571424
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15571387 ttctttcaatctaaataagtggttttcacatatatcaa 15571424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 38007178 - 38007294
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagt 259  Q
    |||||| ||| || ||| |||||||||||||||||||| ||||| ||||| |||||||||| | || |||  ||| |   |||||||||| |||||||||    
T  38007178 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctcgaatcacccctc-tacatctttttcccttttctttcaatttaaataagt 38007276  T
Q  260 ggttttcacatatatcaa 277  Q
    |||||||||| |||||||    
T  38007277 ggttttcacacatatcaa 38007294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 4771041 - 4771077
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||||||||||||||||||||||||||||||    
T  4771041 ttctttcaatctaaataagtggttttcacatatatca 4771077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 13007049 - 13007167
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| ||||| |||||||||||||| ||||| |||||||||||||||| | || | |  ||||| | ||  ||||||||||||||||    
T  13007049 tttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaatcacccctc-tacaccttttttcccattttctttcaatctaaataa 13007147  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  13007148 gtggttttcacatctatcaa 13007167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 26825249 - 26825369
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt---gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaat 255  Q
    |||||| ||| || ||| |||||||||||||||||||| |||||   |||||||||||||| | | || |||  ||||| ||||  ||||||||||||||    
T  26825249 tttctccttctttcatcgaggaggggtggttttaggtcttttttttggacctagaatcaccactc-tacatcttttttccccttttctttcaatctaaat 26825347  T
Q  256 aagtggttttcacatatatcaa 277  Q
    ||||||||||||| | ||||||    
T  26825348 aagtggttttcacgtctatcaa 26825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 31392007 - 31391906
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc----ttctttcaatctaaataagtggttttcacatata 273  Q
    ||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||||||    |||  |||||||||||||||||||||||||| ||    
T  31392007 aggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatc-tttttctccccttttcgatcaatctaaataagtggttttcacattta 31391910  T
Q  274 tcaa 277  Q
    ||||    
T  31391909 tcaa 31391906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 34945268 - 34945360
Alignment:
Q  187 tggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||| ||||| |||||||||||||||  | || |||  ||||| ||||  ||||||||||||||||||||||||||||| ||||||    
T  34945268 tggttttaggtcattttttgacctagaatcacccttc-tacatcttttttccccttttctttcaatctaaataagtggttttcacatctatcaa 34945360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 38597618 - 38597735
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttagg-tcgtttttgacctagaatcaccccacatatatcaattttctc-cttctttcaatctaaataag 258  Q
    |||||| ||| || ||| |||||||||||||||||| |  ||||||||||||||||||||| | || |||  ||||| |  |||||||||| ||||||||    
T  38597618 tttctccttcgttcatcgaggaggggtggttttaggttattttttgacctagaatcacccctc-tacatcttttttccctattctttcaatttaaataag 38597716  T
Q  259 tggttttcacatatatcaa 277  Q
    || ||||||||| ||||||    
T  38597717 tgattttcacatctatcaa 38597735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 2979562 - 2979463
Alignment:
Q  179 aggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttc-tccttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||||||||| |||||||||  ||||||||||| ||||||||| | |  |||  ||||| || ||||||||||||||||||||| |||||||||| ||||    
T  2979562 aggaggggtgattttaggtcaatttttgacctataatcacccctc-tgcatcttttttcctctttctttcaatctaaataagtgattttcacatacatca 2979464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 9113993 - 9113875
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttga-cctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataa 257  Q
    |||||| ||| || ||| |||||||||| ||||||||| ||||| | |||||||||||||| | || |||  ||||| | ||  |||| |||||||||||    
T  9113993 tttctctttcgttcatcgaggaggggtgattttaggtcattttttaacctagaatcacccctc-tacatcttttttcccattttcttttaatctaaataa 9113895  T
Q  258 gtggttttcacatatatcaa 277  Q
    ||||||||||||| ||||||    
T  9113894 gtggttttcacatctatcaa 9113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 7930029 - 7930075
Alignment:
Q  175 atcaaggaggggtggttttaggtcg-tttttgacctagaatcacccc 220  Q
    |||||||||||||| |||||||||  |||||||||||||||||||||    
T  7930029 atcaaggaggggtgattttaggtcaatttttgacctagaatcacccc 7930075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 14082554 - 14082520
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||| |||||||||||||||    
T  14082554 tttcaatctaaataagtggctttcacatatatcaa 14082520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 14211076 - 14211168
Alignment:
Q  184 gggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| |||||||||  ||||||||||||||||||||| | |  |||  ||||| | ||||||||||||||||||||| |||||||||| |||||    
T  14211076 gggtgattttaggtcaatttttgacctagaatcacccctc-tgcatct-ttttccctttctttcaatctaaataagtgattttcacatacatcaa 14211168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 8088408 - 8088363
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||| ||||||| ||||||||||||| |||||||| |||||||    
T  8088408 ttttctctttctttcgatctaaataagtgattttcacaaatatcaa 8088363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 14726649 - 14726612
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  14726649 ttctttcaatctaactaagtggttttcatatatatcaa 14726612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 24229972 - 24229935
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  24229972 ttctttcaatctaaataagtgattttcacatctatcaa 24229935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28541100 - 28541063
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  28541100 ttctttcaatctaaataagtgattttcacatacatcaa 28541063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 39567196 - 39567233
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  39567196 ttctttcaatctaaataagtgattttcacatacatcaa 39567233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 41749223 - 41749260
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  41749223 ttcttttaatctaaataagttgttttcacatatatcaa 41749260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 9267818 - 9267778
Alignment:
Q  237 tccttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||| |||||||||||||||||| |||||| |||||    
T  9267818 tccttcttttaatctaaataagtggtttccacataaatcaa 9267778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 41630350 - 41630382
Alignment:
Q  185 ggtggttttaggtcgtttttgacctagaatcac 217  Q
    |||||||||||||| ||||||||||||||||||    
T  41630350 ggtggttttaggtcatttttgacctagaatcac 41630382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 275
Target Start/End: Complemental strand, 31013890 - 31013721
Alignment:
Q  109 tagtgggctctagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtc-gtttttga 206  Q
    |||| ||| |||||||| ||| |||||||||||||  |||| | |||  ||  |||||| ||| || ||| ||||||||||||||||||||  |||||||    
T  31013890 tagtcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttga 31013791  T
Q  207 cctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||| | || |||  ||| | ||  ||||||||||||||||||||||||||||||| ||||    
T  31013790 cctagaatcacccctc-tacatctttttcccccttttctttcaatctaaataagtggttttcacatctatc 31013721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 29937956 - 29938055
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcacatatatca 276  Q
    |||| |||||||||||| || ||||||||||||||||||||| | || |||  ||||| ||  ||||||||| |||||||||||||||||| ||||||||    
T  29937956 aggatgggtggttttagatcatttttgacctagaatcacccctc-tacatcttttttcgccttttctttcaacctaaataagtggttttcatatatatca 29938054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 14545087 - 14545050
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14545087 ttctttcaatctaaataagtggttttcacatatatcaa 14545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 14916384 - 14916344
Alignment:
Q  179 aggaggggtggttttaggtcgtttttgacctagaatcaccc 219  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  14916384 aggaggggtggttttaggtcatttttgacctagaatcaccc 14916344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 40211615 - 40211453
Alignment:
Q  119 tagttttttagcgagagaaactccacattct-tttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt--gacctagaatc 215  Q
    ||||||| ||| |||||||||||||  |||| ||||| |||  |||||| ||| || ||| ||||||||||| |||||||  |||||  |||||||||||    
T  40211615 tagttttctagtgagagaaactccaatttctctttaaaatttctttctccttcgttaatcgaggaggggtggctttaggtaatttttttgacctagaatc 40211516  T
Q  216 accccacatatatcaatttt-ctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||| | || |||  |||| ||| || ||||||||||||||||| ||||||||||| ||||||    
T  40211515 acccctc-tacatcttttttactcttttctttcaatctaaataagcggttttcacatctatcaa 40211453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 7883425 - 7883388
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7883425 ttctttcaatctaaataagtggttttcacatctatcaa 7883388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 20227479 - 20227438
Alignment:
Q  232 ttttctccttctttcaatctaaataagtggttttcacatata 273  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  20227479 ttttctctttctttcaatctaaataagtggtttccacatata 20227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 20553493 - 20553401
Alignment:
Q  179 aggaggggtggttttaggtcgtttttg-acctagaatcaccccacatatatcaattttctc-cttctttcaatctaaataagtggttttcacat 270  Q
    ||||||||||||||||| || |||||| |||||||||||||||||| | ||   ||||| |  ||||||||||||||||||||| |||||||||    
T  20553493 aggaggggtggttttagatcatttttggacctagaatcaccccaca-acattttttttcccttttctttcaatctaaataagtgattttcacat 20553401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 27110649 - 27110612
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27110649 ttctttcaatctaaataagtggtcttcacatatatcaa 27110612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 36948623 - 36948586
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||| |||||||||    
T  36948623 ttctttcaatctaaataagtggttttcatatatatcaa 36948586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 7677528 - 7677429
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatc-aattttctccttctttcaatctaaataagtggttttcacatatatca 276  Q
    ||||||||||||||||||||  ||||||||||||||||||||| | || |||  |||  ||  ||||||| |||||||||| | ||||||||||||||||    
T  7677528 aggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatctcattcactttttctttcgatctaaataaattgttttcacatatatca 7677430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 3673289 - 3673381
Alignment:
Q  181 gaggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatata 273  Q
    ||||| |||||||||||| ||||||||||||||||| ||| | || |||  ||| | ||||  |||||||||||||||||||||| |||||||||    
T  3673289 gagggttggttttaggtcatttttgacctagaatcatccctc-tacatct-tttgccccttttctttcaatctaaataagtggttatcacatata 3673381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 40619307 - 40619221
Alignment:
Q  191 tttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||| ||||||||||||||||| ||| | || ||   ||||||| || || |||||||||||||||| ||||||||||||||||    
T  40619307 tttaggtcatttttgacctagaatcatccctc-tacatattttttctcttttctatcaatctaaataagtgattttcacatatatcaa 40619221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 17693922 - 17693824
Alignment:
Q  119 tagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatca 216  Q
    ||||||||||| |||||||||||||  |||| | |||  ||  |||||| ||| || ||  ||||||||| |||||||||| |||||||||||||||||    
T  17693922 tagttttttagtgagagaaactccaacttctctctaaactttctttctccttcgttcattgaggaggggttgttttaggtcatttttgacctagaatca 17693824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 26469379 - 26469345
Alignment:
Q  243 tttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||| ||||||||||||||||    
T  26469379 tttcaatctaaataagtgattttcacatatatcaa 26469345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 14585603 - 14585640
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  14585603 ttctttcaatctaaataagtgattttcacatacatcaa 14585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 20559931 - 20559894
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  20559931 ttctttcaatctaaataagtgattttcacatctatcaa 20559894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 20571493 - 20571456
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  20571493 ttctttcaatctaaataagtgattttcacatctatcaa 20571456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 23230548 - 23230585
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||| || ||||||    
T  23230548 ttctttcaatctaaataagtggttttcatatctatcaa 23230585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 28897615 - 28897652
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  28897615 ttctttcaatctaaataagtggttttcatgtatatcaa 28897652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24099504 - 24099468
Alignment:
Q  184 gggtggttttaggtcgtttttgacctagaatcacccc 220  Q
    |||||| |||||||| |||||||||||||||||||||    
T  24099504 gggtggctttaggtcatttttgacctagaatcacccc 24099468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 1742062 - 1742222
Alignment:
Q  119 tagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatca 216  Q
    ||||||| ||| ||||||||||| |  |||||| |||  ||| |||||| ||| || ||||||||  |||||||||||||| ||||| ||||||||||||    
T  1742062 tagttttctagtgagagaaactcaaacttctttctaaacttcctttctctttcgttcatcaaggaatggtggttttaggtcattttttgacctagaatca 1742161  T
Q  217 ccccacatatatcaattttctcc---ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||| | |  |||  ||||| ||   ||||||||||||||||||||||||||||||||||||||    
T  1742162 cccctc-tccatc--ttttcccccttttctttcaatctaaataagtggttttcacatatatcaa 1742222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 45415394 - 45415501
Alignment:
Q  172 tttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttcac 268  Q
    |||||| ||||||||||||||||||||  ||||||| ||||||||||||| | || |||  ||||| ||  |||||||||| ||||||||||||||||||    
T  45415394 tttatcgaggaggggtggttttaggtcattttttgatctagaatcacccctc-tacatcttttttccccttttctttcaatttaaataagtggttttcac 45415492  T
Q  269 atatatcaa 277  Q
    || ||||||    
T  45415493 atctatcaa 45415501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 23291870 - 23291793
Alignment:
Q  200 tttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |  | |||  ||||||| || ||||||||||||||||||||||||||||||||||||    
T  23291870 tttttgacctagaatcacccctcg-acatcttttttctcttttctttcaatctaaataagtggttttcacatatatcaa 23291793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 29738904 - 29738786
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcctt---ctttcaatctaaata 256  Q
    |||||| ||| || ||| ||||||||||||||||||||  ||||| ||||||||||||||| | || |||  ||||| ||||   |||||||||||||||    
T  29738904 tttctccttcgttcatcgaggaggggtggttttaggtcaattttttacctagaatcacccctc-tacatct-ttttcccctttttctttcaatctaaata 29738807  T
Q  257 agtggttttcacatatatcaa 277  Q
    |||||||||||||| ||||||    
T  29738806 agtggttttcacatctatcaa 29738786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 10776772 - 10776612
Alignment:
Q  118 ctagttttttagcgagagaaactccacattcttt-taagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatc 215  Q
    |||||||||||| |||||||||||||  |||| | |||  ||  |||||| |||||| ||| |||| |||||||||||| || ||||| |||||||||||    
T  10776772 ctagttttttagggagagaaactccaatttctctctaaactttctttctccttcattcatcgaggaagggtggttttagatcattttttgacctagaatc 10776673  T
Q  216 accccacatatatcaattttctcct----tctttcaatctaaataagtggttttcacatata 273  Q
    ||||  | || |||  |||| ||||    ||||||||||||||||||||||||| |||||||    
T  10776672 acccatc-tacatcttttttttcctattttctttcaatctaaataagtggtttttacatata 10776612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 15435188 - 15435023
Alignment:
Q  114 ggctctagttttttagcgagagaaactccacattcttttaaga--ttcttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gaccta 210  Q
    |||||||||||||||  |||||||||||||  |||| | || |  ||||||  || |||||| |||||||||||| ||||||||||| ||||| || |||    
T  15435188 ggctctagttttttattgagagaaactccaacttctctcaaaaccttctttcttc-ttcattcatcaaggaggggcggttttaggtcattttttgatcta 15435090  T
Q  211 gaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| ||| | || |||  ||||| | || ||||||||||||||||||| |||||||||| |||||    
T  15435089 gaatcaaccctc-tacatcttttttcccttttctttcaatctaaataagtgtttttcacataaatcaa 15435023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 15836017 - 15836134
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| || ||| ||||||||| ||||||||||||||  ||||||||||||||||||| |  ||| || | ||||||||  |||| ||||| |||||||    
T  15836017 tttctctttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcaccgc-tatacat-atttttctccttttctatcaatttaaataa 15836114  T
Q  258 gtggttttcacatatatcaa 277  Q
    |||||||||||||| |||||    
T  15836115 gtggttttcacatacatcaa 15836134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 8212189 - 8212060
Alignment:
Q  150 tttaagattcttttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttc 246  Q
    ||||| ||| ||||||| |||||| |||||||||||||| |||||| |  ||||| || ||| ||||||| | | || |||  |||| |||||  ||||     
T  8212189 tttaaaatttttttctccttcattcatcaaggaggggtgcttttagattattttttgatctacaatcacctctc-tacatcttttttttccttttcttta 8212091  T
Q  247 aatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||||||    
T  8212090 aatctaaataagtggttttcacatatatcaa 8212060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 277
Target Start/End: Complemental strand, 34878583 - 34878422
Alignment:
Q  118 ctagttttttagcgagagaaactccacattct-tttaagattcttttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatc 215  Q
    |||||||| ||| |||||||||||||  |||| |||||  ||  |||||| ||| || ||| ||||||||||||||||||||  ||||||||||||||||    
T  34878583 ctagttttctagtgagagaaactccaacttctctttaaactttctttctctttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatc 34878484  T
Q  216 accccacatatatcaattttctcc---ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    | | ||  || |||  |||| |||   |||||||||| ||||||||||||||||||| |||||||    
T  34878483 a-ctcatctacatc--ttttttccattttctttcaatttaaataagtggttttcacacatatcaa 34878422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 26535299 - 26535333
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatat 274  Q
    |||||||||||||||||||||||||||||||||||    
T  26535299 ttctttcaatctaaataagtggttttcacatatat 26535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 31984018 - 31984122
Alignment:
Q  175 atcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacata 271  Q
    ||||||||| |||||||||||||| ||||| ||||||||| |||| | | || |||  ||||  ||||  ||||| ||||||||||||||||||||||||    
T  31984018 atcaaggagaggtggttttaggtcattttttgacctagaagcacctctc-tacatctttttttcccttttctttcgatctaaataagtggttttcacata 31984116  T
Q  272 tatcaa 277  Q
    ||||||    
T  31984117 tatcaa 31984122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 7337850 - 7337813
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7337850 ttctttcaatctaaataagtggttttcacatctatcaa 7337813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 13144999 - 13144962
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13144999 ttctttcaatctaaataagtggttttcatatatatcaa 13144962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 21947805 - 21947768
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  21947805 ttctttcaatctaaataagtggttttcacatctatcaa 21947768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 31918894 - 31918931
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31918894 ttctatcaatctaaataagtggttttcacatatatcaa 31918931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 35484578 - 35484541
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35484578 ttctttcaatctaaataagtggttttcacatctatcaa 35484541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 3228094 - 3228137
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt 204  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  3228094 tttctccttcattcatcaaggaggggtggttttaggtcattttt 3228137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 27456446 - 27456480
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatat 274  Q
    ||||||||||||||||||||||||||| |||||||    
T  27456446 ttctttcaatctaaataagtggttttcgcatatat 27456480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 50377230 - 50377264
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatat 274  Q
    |||||||||| ||||||||||||||||||||||||    
T  50377230 ttctttcaatttaaataagtggttttcacatatat 50377264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 940269 - 940306
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  940269 ttcttttaatttaaataagtggttttcacatatatcaa 940306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 11462634 - 11462597
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  11462634 ttctttcaatctaaataagtgggtttcacatctatcaa 11462597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 15492195 - 15492232
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||| || ||||||||||||||||    
T  15492195 ttctttcaatctaaataaatgattttcacatatatcaa 15492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 27580310 - 27580277
Alignment:
Q  244 ttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||| ||||||||||||||||||||||||    
T  27580310 ttcaatctatataagtggttttcacatatatcaa 27580277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 31317655 - 31317692
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  31317655 ttctttcaatttaaataagtggttttcacacatatcaa 31317692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 32394903 - 32394940
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  32394903 ttctttcaatctaaatgagtggttttcacatctatcaa 32394940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 35462224 - 35462187
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  35462224 ttctttcaatttaaataagtggttttcacatctatcaa 35462187  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 48750093 - 48750130
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  48750093 ttctttcaatctaaataagtgattttcacatacatcaa 48750130  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 51916839 - 51916802
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  51916839 ttctttcaatctaaataagtggttttcaaataaatcaa 51916802  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 11453870 - 11453898
Alignment:
Q  243 tttcaatctaaataagtggttttcacata 271  Q
    |||||||||||||||||||||||||||||    
T  11453870 tttcaatctaaataagtggttttcacata 11453898  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 12635076 - 12635108
Alignment:
Q  245 tcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||||||||| ||||||||||||||||    
T  12635076 tcaatctaaataagtgattttcacatatatcaa 12635108  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 39888088 - 39888132
Alignment:
Q  232 ttttctcctt-ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  39888088 ttttctcctttctttaaatcttaataagtggttttcacatatatc 39888132  T

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Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 71529 - 71435
Alignment:
Q  182 aggggtggttttaggtcgtttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||| ||||||||||| ||||||||| | || || | ||| ||| || ||||||||||||| ||||||||||||||||||||||    
T  71529 aggggtggttttaggtcatttttgacctaaaatcacccctc-tacat-attttcctcttttctttcaatctaaacaagtggttttcacatatatcaa 71435  T

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Target: scaffold0445 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 1165 - 1282
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataag 258  Q
    |||||| ||| || ||| ||||| |||||||||||||| ||||| |||||||||||||||| | ||  ||  ||||| | || |||||| ||||||||||    
T  1165 tttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaatcacccctc-tacttcttttttcccttttctttcactctaaataag 1263  T
Q  259 tggttttcacatatatcaa 277  Q
    |||||||||||||||||||    
T  1264 tggttttcacatatatcaa 1282  T

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Target: scaffold0088 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 50625 - 50725
Alignment:
Q  179 aggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||| |||||||||  ||||||||||||||||| ||| | || |||  ||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  50625 aggaggggtgattttaggtcactttttgacctagaatcatccctc-tacatcttttttccccttttctttcaatctaaataagtggttttcacatctatc 50723  T
Q  276 aa 277  Q
    ||    
T  50724 aa 50725  T

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Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 277
Target Start/End: Complemental strand, 33005 - 32898
Alignment:
Q  172 tttatcaaggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcac 268  Q
    |||||| |||||| ||||||||||||| ||||| ||| |||||||||||| | || |||  || || ||||  |||||||||||||||||||||||||||    
T  33005 tttatcgaggaggagtggttttaggtcattttttgacatagaatcacccctc-tacatcttttgtccccttttctttcaatctaaataagtggttttcac 32907  T
Q  269 atatatcaa 277  Q
    || ||||||    
T  32906 atctatcaa 32898  T

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Target: scaffold0492 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 12737 - 12854
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataa 257  Q
    |||||| || ||| ||||||||| ||||||||||||||  ||||||||||||||||||| |  ||| || | ||||||||  |||| ||||| |||||||    
T  12737 tttctctttgattcatcaaggagaggtggttttaggtcattttttgacctagaatcaccgc-tatacat-atttttctccttttctatcaatttaaataa 12834  T
Q  258 gtggttttcacatatatcaa 277  Q
    |||||||||||||| |||||    
T  12835 gtggttttcacatacatcaa 12854  T

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Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 15331 - 15420
Alignment:
Q  179 aggaggggtggttttaggtc-gtttttgacctagaatcaccccacatatatcaattttctcc--ttctttcaatctaaataagtggttttca 267  Q
    ||||||||||||||||||||  ||||||||||||||||||||| | || |||  ||||| ||  ||||||||||||||||||||||||||||    
T  15331 aggaggggtggttttaggtcattttttgacctagaatcacccctc-tacatc-tttttccccttttctttcaatctaaataagtggttttca 15420  T

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Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 19304 - 19245
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtcgtttttgacctagaatcacccc 220  Q
    |||||| |||| | ||| |||||||||||||||| ||||||||||||||||||| |||||    
T  19304 tttctctttcactcatcgaggaggggtggttttatgtcgtttttgacctagaattacccc 19245  T

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Target: scaffold0603 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 7617 - 7654
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7617 ttctttcaatttaaataagtggttttcacatatatcaa 7654  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 10228 - 10191
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  10228 ttctttccatctaaataagtggttttcacatatatcaa 10191  T

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Target: scaffold0136; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 37948 - 37985
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37948 ttctttcaatctaaataagtggttttcacatatgtcaa 37985  T

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Target: scaffold0888 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 1935 - 1825
Alignment:
Q  168 ttcatttatcaaggaggggtggttttaggtcg-tttttgacctagaatcaccccacatatatcaattttctcctt-ctttcaatctaaataagtggtttt 265  Q
    |||| ||||| |||||||||| | |||||||  ||||||||||||||||||| | | |  |||  ||||| |||| ||||||||||||||||||| ||||    
T  1935 ttcacttatcgaggaggggtgatattaggtcaatttttgacctagaatcacctctc-tgcatcttttttcccctttctttcaatctaaataagtgatttt 1837  T
Q  266 cacatatatcaa 277  Q
    |||||| |||||    
T  1836 cacatacatcaa 1825  T

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Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 72132 - 72074
Alignment:
Q  161 tttctcattcatttatcaaggaggggtggttttaggtc-gtttttgacctagaatcacc 218  Q
    |||||| ||| || ||| ||||||||||||||||||||  |||||||||||||||||||    
T  72132 tttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacc 72074  T

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Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 72051 - 72014
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  72051 ttctttcaatccaaataagtggttttcacatctatcaa 72014  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 58329 - 58230
Alignment:
Q  179 aggaggggtggttttaggtcgttttt-gacctagaatcaccccacatatatcaattttctcctt--ctttcaatctaaataagtggttttcacatatatc 275  Q
    |||||||||||||||||||| ||||| |||||| ||||||||| | |  |||  |||| |||||  ||||||||||||||||||| ||| ||||||||||    
T  58329 aggaggggtggttttaggtcattttttgacctaaaatcacccctc-tgcatccttttt-tccttttctttcaatctaaataagtgatttccacatatatc 58232  T

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Target: scaffold0554 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 10778 - 10815
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  10778 ttctttgaatgtaaataagtggttttcacatatatcaa 10815  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 2005 - 1968
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  2005 ttctttcaatttaaataagtggtttgcacatatatcaa 1968  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 31457 - 31420
Alignment:
Q  240 ttctttcaatctaaataagtggttttcacatatatcaa 277  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  31457 ttctttcaatataaataagtagttttcacatatatcaa 31420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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