View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_19 (Length: 334)
Name: NF9884_high_19
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 36150323 - 36150526
Alignment:
| Q |
20 |
tttaaaattgcacaaagttaaccacaatctcagtaaaaatattaaccacagtcaaaaacaagttcttggcannnnnnngttagaata---gaaggtgggt |
116 |
Q |
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| T |
36150323 |
tttaaaattgcacaaagttaaccacaatctcagtaaaaatattaaccacggtcaaaaacaatttcttggcatttttt-gttagaaaatgagaaggtggat |
36150421 |
T |
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| Q |
117 |
gagcttttgaaatggattgaaaaggagaaaatatttgggagaataacaatttacttgcttaactagattggtttggtatctactgtttgatttgatttat |
216 |
Q |
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| T |
36150422 |
aagcttttgaaatagattgaaaaggagaaaatatttgggagaataacaatttacttgcttaacaagattggtttggtatctactgtttgatttgatttat |
36150521 |
T |
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| Q |
217 |
aataa |
221 |
Q |
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||||| |
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| T |
36150522 |
aataa |
36150526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 36150641 - 36150737
Alignment:
| Q |
214 |
tataataaatgactatttctttcatgtttataagtttcaactttcaagtagagttctatacatcaatcagaaaaattgtaccct-aacattaacttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
36150641 |
tataataaatgactatttctttcatgtttataagtttcaactttcaagtagagttctatacatcaatcagaaaaattgcaccctaaacattaacttt |
36150737 |
T |
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