View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_24 (Length: 292)
Name: NF9884_high_24
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 25715634 - 25715371
Alignment:
| Q |
20 |
ttaaagagtcccgtatatgttgggagatggcatgaactcaagacaatcttcacctcacaaactgattttatggaattgtattaggaccaactacgatttt |
119 |
Q |
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| T |
25715634 |
ttaaagagtcccacatatgttgggagatggcatgaactcaagacaactctcacttcacaaaccgattttataggattgtattaggaccaagtacgatttt |
25715535 |
T |
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| Q |
120 |
taagtttgacaaatgctgatatttttaaactgaaaatcttcacttggatttaaacccggaa-cacaattgtgcgtgaattatttgtggtttttgtcactt |
218 |
Q |
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| T |
25715534 |
taagtttgacaaatgctaatatttttaaactaaaaatctttacttggatttaaacccggaaccacaattgtgcgtgaactttttgtgatttttgtcactt |
25715435 |
T |
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| Q |
219 |
catctgcaattcatataaaaagtccaattatcatttcttacggagtttcggcaaaatttctctg |
282 |
Q |
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| T |
25715434 |
catctacaattcatagaaaaagtccaattatcatttcttacggagtttcggcaaaatttctctg |
25715371 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 37246721 - 37246667
Alignment:
| Q |
69 |
tcacctcacaaactgattttatggaattgtattaggaccaactacgatttttaag |
123 |
Q |
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| T |
37246721 |
tcacctcacaaaccgattttatggaattgtgttaggtccaaccacgatttctaag |
37246667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 33996141 - 33996079
Alignment:
| Q |
61 |
gacaatcttcacctcacaaactgattttatggaattgtattaggaccaactacgatttttaag |
123 |
Q |
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| T |
33996141 |
gacaatcctcacctcacaagcccattttatggagttgtattaggttcaaccacgatttttaag |
33996079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 37868643 - 37868583
Alignment:
| Q |
63 |
caatcttcacctcacaaactgattttatggaattgtattaggaccaactacgatttttaag |
123 |
Q |
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||||| ||||||||||| ||| |||| ||||||||| ||||| | ||| |||||||||||| |
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| T |
37868643 |
caatcctcacctcacaagctggttttgtggaattgtgttaggcctaaccacgatttttaag |
37868583 |
T |
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